Wall clock time and date at job start Mon Mar 30 2020 06:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47081 * 2 1 4 4 O 1.42901 * 109.46751 * 119.99490 * 2 1 3 5 5 C 1.50690 * 109.46813 * 239.99665 * 2 1 3 6 6 C 1.38273 * 119.53551 * 124.98220 * 5 2 1 7 7 C 1.38495 * 119.24567 * 179.69852 * 6 5 2 8 8 C 1.39313 * 118.35397 * 0.57918 * 7 6 5 9 9 N 1.39707 * 120.49533 * 179.71464 * 8 7 6 10 10 C 1.46498 * 120.00095 * 89.04461 * 9 8 7 11 11 C 1.50699 * 109.46917 * 270.00241 * 10 9 8 12 12 H 1.07997 * 120.00510 * 359.97438 * 11 10 9 13 13 C 1.37888 * 119.99946 * 180.02562 * 11 10 9 14 14 N 1.31510 * 119.99639 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00047 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47517 * 89.99699 * 15 13 11 17 17 H 1.48501 * 109.46887 * 209.99958 * 15 13 11 18 18 H 1.48504 * 109.47097 * 329.99768 * 15 13 11 19 19 C 1.46508 * 119.99913 * 269.04939 * 9 8 7 20 20 C 1.52997 * 117.49620 * 356.63257 * 19 9 8 21 21 C 1.52996 * 117.49947 * 65.29442 * 19 9 8 22 22 C 1.38897 * 119.01711 * 359.44295 * 8 7 6 23 23 N 1.31823 * 120.65296 * 0.27028 * 22 8 7 24 24 H 1.08995 * 109.46973 * 60.00339 * 1 2 3 25 25 H 1.09000 * 109.47447 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47187 * 300.00509 * 1 2 3 27 27 H 0.96704 * 114.00648 * 299.99953 * 4 2 1 28 28 H 1.08004 * 120.37638 * 0.02562 * 6 5 2 29 29 H 1.08005 * 120.82869 * 180.29777 * 7 6 5 30 30 H 1.08993 * 109.47194 * 30.00130 * 10 9 8 31 31 H 1.08999 * 109.46944 * 150.00722 * 10 9 8 32 32 H 0.97000 * 119.99586 * 179.97438 * 14 13 11 33 33 H 1.09000 * 115.54641 * 210.96679 * 19 9 8 34 34 H 1.09003 * 117.49657 * 215.00637 * 20 19 9 35 35 H 1.08998 * 117.50257 * 0.02562 * 20 19 9 36 36 H 1.09002 * 117.50060 * 359.97294 * 21 19 9 37 37 H 1.08998 * 117.49969 * 144.99739 * 21 19 9 38 38 H 1.07994 * 119.67413 * 180.29753 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.0323 -0.7104 -1.2304 6 6 2.9098 -0.0633 -2.0807 7 6 3.3724 -0.7241 -3.2065 8 6 2.9216 -2.0206 -3.4446 9 7 3.3548 -2.7263 -4.5698 10 6 4.5700 -3.5416 -4.5001 11 6 5.7614 -2.7008 -4.8806 12 1 5.6269 -1.6631 -5.1480 13 6 7.0233 -3.2566 -4.8883 14 7 7.1871 -4.5203 -4.5632 15 14 8.5001 -2.2143 -5.3592 16 1 9.0608 -1.5722 -4.1433 17 1 9.5346 -3.0760 -5.9857 18 1 8.0790 -1.1659 -6.3230 19 6 2.5939 -2.6511 -5.8195 20 6 1.2922 -1.8472 -5.8066 21 6 2.5261 -1.2951 -6.5248 22 6 2.0395 -2.6033 -2.5438 23 7 1.6286 -1.9404 -1.4811 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.7210 -0.2700 1.9981 28 1 3.2348 0.9442 -1.8667 29 1 4.0621 -0.2446 -3.8854 30 1 4.6988 -3.9157 -3.4846 31 1 4.4837 -4.3820 -5.1888 32 1 8.0747 -4.9114 -4.5690 33 1 2.6286 -3.5428 -6.4454 34 1 0.4705 -2.2100 -6.4241 35 1 1.0021 -1.3740 -4.8685 36 1 3.0473 -0.4588 -6.0588 37 1 2.5162 -1.2946 -7.6147 38 1 1.6870 -3.6096 -2.7156 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000149627233.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:06 Heat of formation + Delta-G solvation = 23.003892 kcal Electronic energy + Delta-G solvation = -19671.630230 eV Core-core repulsion = 16708.265693 eV Total energy + Delta-G solvation = -2963.364537 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.05950 -37.73272 -36.65548 -33.87010 -32.51967 -31.81891 -31.08225 -28.79396 -26.41810 -24.06671 -23.22271 -22.34249 -21.89531 -21.19881 -19.70434 -17.30976 -16.52224 -16.39789 -15.90083 -15.69332 -15.41814 -14.39481 -14.19186 -14.08720 -13.59269 -13.33694 -12.68199 -12.60758 -12.48091 -12.31174 -12.14867 -11.85958 -11.19410 -11.15639 -11.04557 -10.93875 -10.60425 -10.38826 -10.19467 -10.09342 -9.75912 -9.47934 -9.29129 -9.10295 -8.44478 -8.31390 -6.86971 -5.98635 -4.07418 1.46406 1.76158 3.29221 3.35939 3.38415 3.98630 4.09814 4.38653 4.45340 4.48251 4.66065 4.90942 5.08003 5.26558 5.29575 5.37106 5.41753 5.49001 5.53254 5.59315 5.62059 5.76898 5.88207 5.98801 6.09807 6.19768 6.25160 6.45820 6.48982 6.59526 6.78531 6.97808 7.23709 7.41845 7.64896 7.88557 8.28753 8.35248 8.40465 8.66381 9.02140 9.59004 11.04387 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.018883 B = 0.005945 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.455879 B = 4708.445824 C = 5483.492859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.160 3.840 3 H 0.064 0.936 4 O -0.555 6.555 5 C 0.102 3.898 6 C -0.156 4.156 7 C -0.082 4.082 8 C 0.167 3.833 9 N -0.646 5.646 10 C 0.276 3.724 11 C -0.526 4.526 12 H 0.057 0.943 13 C 0.059 3.941 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.140 3.860 20 C -0.205 4.205 21 C -0.209 4.209 22 C 0.083 3.917 23 N -0.460 5.460 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.374 0.626 28 H 0.126 0.874 29 H 0.135 0.865 30 H 0.022 0.978 31 H 0.028 0.972 32 H 0.262 0.738 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.491 9.036 4.349 16.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.101 3.899 3 H 0.082 0.918 4 O -0.360 6.360 5 C -0.036 4.036 6 C -0.176 4.176 7 C -0.110 4.110 8 C 0.072 3.928 9 N -0.370 5.370 10 C 0.157 3.843 11 C -0.566 4.566 12 H 0.076 0.924 13 C -0.142 4.142 14 N -0.537 5.537 15 Si 0.720 3.280 16 H -0.208 1.208 17 H -0.212 1.212 18 H -0.200 1.200 19 C 0.033 3.967 20 C -0.244 4.244 21 C -0.249 4.249 22 C -0.077 4.077 23 N -0.169 5.169 24 H 0.081 0.919 25 H 0.094 0.906 26 H 0.075 0.925 27 H 0.221 0.779 28 H 0.144 0.856 29 H 0.153 0.847 30 H 0.040 0.960 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.132 0.868 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -12.604 8.038 4.496 15.610 hybrid contribution 1.418 1.455 -0.529 2.100 sum -11.186 9.494 3.966 15.199 Atomic orbital electron populations 1.22415 0.95536 1.03755 1.01725 1.20412 0.93105 0.93212 0.83175 0.91779 1.86677 1.76636 1.57410 1.15235 1.20575 0.96132 0.91606 0.95272 1.21808 0.98554 1.01243 0.96028 1.22263 0.97264 0.95066 0.96402 1.18432 0.93620 0.90779 0.90013 1.45850 1.29611 1.56133 1.05454 1.18965 0.79218 0.89188 0.96924 1.21712 0.91814 0.97581 1.45468 0.92444 1.24973 0.98855 0.94956 0.95465 1.69928 1.22955 1.11960 1.48812 0.86600 0.82570 0.80248 0.78610 1.20763 1.21211 1.19961 1.21137 0.93036 0.93832 0.88650 1.23234 0.92273 1.06395 1.02467 1.23409 1.01402 1.01211 0.98915 1.23312 0.95044 0.99637 0.89669 1.67319 1.23854 1.07447 1.18327 0.91902 0.90635 0.92489 0.77943 0.85581 0.84747 0.96013 0.95421 0.92825 0.86837 0.89125 0.89666 0.89378 0.89419 0.83094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 9.39 37.16 0.35 -1.52 16 2 C 0.16 2.02 3.90 -27.88 -0.11 1.91 16 3 H 0.06 0.65 7.86 -51.93 -0.41 0.25 16 4 O -0.55 -7.43 13.30 -35.23 -0.47 -7.90 16 5 C 0.10 1.66 5.81 -82.57 -0.48 1.18 16 6 C -0.16 -2.48 9.70 -39.47 -0.38 -2.86 16 7 C -0.08 -1.50 10.04 -39.09 -0.39 -1.90 16 8 C 0.17 3.24 3.54 -83.63 -0.30 2.94 16 9 N -0.65 -13.38 2.75 -165.42 -0.46 -13.84 16 10 C 0.28 6.95 5.49 -5.19 -0.03 6.92 16 11 C -0.53 -14.35 9.39 -34.44 -0.32 -14.68 16 12 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 15 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 19 C 0.14 2.49 6.57 -67.93 -0.45 2.05 16 20 C -0.21 -3.09 9.84 -26.69 -0.26 -3.35 16 21 C -0.21 -3.38 10.37 -26.69 -0.28 -3.66 16 22 C 0.08 1.54 11.05 -17.31 -0.19 1.35 16 23 N -0.46 -8.30 9.87 -9.30 -0.09 -8.39 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.94 7.94 -51.93 -0.41 0.53 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.37 2.92 9.08 45.56 0.41 3.33 16 28 H 0.13 1.62 7.94 -52.48 -0.42 1.20 16 29 H 0.13 2.50 8.06 -52.48 -0.42 2.08 16 30 H 0.02 0.60 8.05 -51.93 -0.42 0.18 16 31 H 0.03 0.73 8.07 -51.93 -0.42 0.31 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 33 H 0.11 1.94 8.14 -51.93 -0.42 1.52 16 34 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.08 1.36 7.00 -51.93 -0.36 0.99 16 36 H 0.09 1.52 8.07 -51.93 -0.42 1.10 16 37 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.15 2.64 8.06 -52.49 -0.42 2.21 16 LS Contribution 327.56 15.07 4.94 4.94 Total: -1.00 -31.32 327.56 -8.25 -39.56 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -4.95 Total: 4.76 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -2.94 Total: -10.06 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 0.19 Total: -47.76 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.47 Total: -7.90 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.32 -8.25 -39.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149627233.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.568 kcal (2) G-P(sol) polarization free energy of solvation -31.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds