Wall clock time and date at job start Mon Mar 30 2020 06:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47081 * 2 1 4 4 O 1.42901 * 109.46751 * 119.99490 * 2 1 3 5 5 C 1.50690 * 109.46813 * 239.99665 * 2 1 3 6 6 C 1.38273 * 119.53551 * 124.98220 * 5 2 1 7 7 C 1.38495 * 119.24567 * 179.69852 * 6 5 2 8 8 C 1.39313 * 118.35397 * 0.57918 * 7 6 5 9 9 N 1.39707 * 120.49533 * 179.71464 * 8 7 6 10 10 C 1.46498 * 120.00095 * 89.04461 * 9 8 7 11 11 C 1.50699 * 109.46917 * 270.00241 * 10 9 8 12 12 H 1.07997 * 120.00510 * 359.97438 * 11 10 9 13 13 C 1.37888 * 119.99946 * 180.02562 * 11 10 9 14 14 N 1.31510 * 119.99639 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00047 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47517 * 89.99699 * 15 13 11 17 17 H 1.48501 * 109.46887 * 209.99958 * 15 13 11 18 18 H 1.48504 * 109.47097 * 329.99768 * 15 13 11 19 19 C 1.46508 * 119.99913 * 269.04939 * 9 8 7 20 20 C 1.52997 * 117.49620 * 356.63257 * 19 9 8 21 21 C 1.52996 * 117.49947 * 65.29442 * 19 9 8 22 22 C 1.38897 * 119.01711 * 359.44295 * 8 7 6 23 23 N 1.31823 * 120.65296 * 0.27028 * 22 8 7 24 24 H 1.08995 * 109.46973 * 60.00339 * 1 2 3 25 25 H 1.09000 * 109.47447 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47187 * 300.00509 * 1 2 3 27 27 H 0.96704 * 114.00648 * 299.99953 * 4 2 1 28 28 H 1.08004 * 120.37638 * 0.02562 * 6 5 2 29 29 H 1.08005 * 120.82869 * 180.29777 * 7 6 5 30 30 H 1.08993 * 109.47194 * 30.00130 * 10 9 8 31 31 H 1.08999 * 109.46944 * 150.00722 * 10 9 8 32 32 H 0.97000 * 119.99586 * 179.97438 * 14 13 11 33 33 H 1.09000 * 115.54641 * 210.96679 * 19 9 8 34 34 H 1.09003 * 117.49657 * 215.00637 * 20 19 9 35 35 H 1.08998 * 117.50257 * 0.02562 * 20 19 9 36 36 H 1.09002 * 117.50060 * 359.97294 * 21 19 9 37 37 H 1.08998 * 117.49969 * 144.99739 * 21 19 9 38 38 H 1.07994 * 119.67413 * 180.29753 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.0323 -0.7104 -1.2304 6 6 2.9098 -0.0633 -2.0807 7 6 3.3724 -0.7241 -3.2065 8 6 2.9216 -2.0206 -3.4446 9 7 3.3548 -2.7263 -4.5698 10 6 4.5700 -3.5416 -4.5001 11 6 5.7614 -2.7008 -4.8806 12 1 5.6269 -1.6631 -5.1480 13 6 7.0233 -3.2566 -4.8883 14 7 7.1871 -4.5203 -4.5632 15 14 8.5001 -2.2143 -5.3592 16 1 9.0608 -1.5722 -4.1433 17 1 9.5346 -3.0760 -5.9857 18 1 8.0790 -1.1659 -6.3230 19 6 2.5939 -2.6511 -5.8195 20 6 1.2922 -1.8472 -5.8066 21 6 2.5261 -1.2951 -6.5248 22 6 2.0395 -2.6033 -2.5438 23 7 1.6286 -1.9404 -1.4811 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.7210 -0.2700 1.9981 28 1 3.2348 0.9442 -1.8667 29 1 4.0621 -0.2446 -3.8854 30 1 4.6988 -3.9157 -3.4846 31 1 4.4837 -4.3820 -5.1888 32 1 8.0747 -4.9114 -4.5690 33 1 2.6286 -3.5428 -6.4454 34 1 0.4705 -2.2100 -6.4241 35 1 1.0021 -1.3740 -4.8685 36 1 3.0473 -0.4588 -6.0588 37 1 2.5162 -1.2946 -7.6147 38 1 1.6870 -3.6096 -2.7156 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000149627233.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:05 Heat of formation + Delta-G solvation = 2.305639 kcal Electronic energy + Delta-G solvation = -19672.527773 eV Core-core repulsion = 16708.265693 eV Total energy + Delta-G solvation = -2964.262081 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.40216 -39.02361 -37.77726 -35.59502 -34.29361 -33.13669 -32.39954 -30.18071 -28.20331 -25.35289 -24.72350 -24.09843 -23.14892 -22.39732 -21.13743 -18.61866 -18.24439 -17.69761 -17.32942 -17.11940 -16.98801 -16.16649 -15.37295 -15.17774 -14.92533 -14.62859 -14.45445 -14.12528 -13.89646 -13.70279 -13.40055 -13.03881 -12.90193 -12.76123 -12.49116 -12.35548 -12.14706 -12.10552 -11.90637 -11.32772 -11.14718 -11.01001 -10.67455 -10.59859 -10.50551 -9.71150 -8.58223 -8.01676 -6.29165 0.11724 0.36538 1.38897 1.38961 1.49846 2.37076 2.61244 2.73632 3.09100 3.13795 3.32638 3.53961 3.95159 4.01614 4.05617 4.11630 4.15869 4.20643 4.30401 4.42073 4.49912 4.74626 4.77542 4.85088 4.92396 4.95031 5.10762 5.14272 5.19100 5.24192 5.31067 5.36718 5.46402 5.67004 5.73568 6.19717 6.56661 6.91491 6.93312 6.99818 7.16348 7.43698 8.90306 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.018883 B = 0.005945 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.455879 B = 4708.445824 C = 5483.492859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.158 3.842 3 H 0.098 0.902 4 O -0.582 6.582 5 C 0.096 3.904 6 C -0.148 4.148 7 C -0.095 4.095 8 C 0.145 3.855 9 N -0.649 5.649 10 C 0.294 3.706 11 C -0.533 4.533 12 H 0.055 0.945 13 C 0.007 3.993 14 N -0.932 5.932 15 Si 0.959 3.041 16 H -0.278 1.278 17 H -0.282 1.282 18 H -0.266 1.266 19 C 0.106 3.894 20 C -0.173 4.173 21 C -0.204 4.204 22 C 0.073 3.927 23 N -0.473 5.473 24 H 0.066 0.934 25 H 0.050 0.950 26 H 0.088 0.912 27 H 0.398 0.602 28 H 0.163 0.837 29 H 0.127 0.873 30 H -0.013 1.013 31 H 0.008 0.992 32 H 0.264 0.736 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.107 0.893 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.185 11.553 4.678 18.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.099 3.901 3 H 0.115 0.885 4 O -0.391 6.391 5 C -0.043 4.043 6 C -0.168 4.168 7 C -0.122 4.122 8 C 0.050 3.950 9 N -0.374 5.374 10 C 0.173 3.827 11 C -0.572 4.572 12 H 0.074 0.926 13 C -0.192 4.192 14 N -0.573 5.573 15 Si 0.784 3.216 16 H -0.204 1.204 17 H -0.207 1.207 18 H -0.190 1.190 19 C 0.000 4.000 20 C -0.211 4.211 21 C -0.244 4.244 22 C -0.086 4.086 23 N -0.182 5.182 24 H 0.085 0.915 25 H 0.070 0.930 26 H 0.107 0.893 27 H 0.248 0.752 28 H 0.181 0.819 29 H 0.145 0.855 30 H 0.005 0.995 31 H 0.026 0.974 32 H 0.073 0.927 33 H 0.131 0.869 34 H 0.137 0.863 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.125 0.875 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.339 10.580 4.830 17.697 hybrid contribution 1.565 0.696 -0.549 1.799 sum -11.774 11.275 4.281 16.855 Atomic orbital electron populations 1.22353 0.94101 1.02745 1.03536 1.20600 0.94189 0.93834 0.81455 0.88457 1.86603 1.77185 1.58600 1.16665 1.21368 0.95279 0.91005 0.96621 1.22154 0.97499 1.02580 0.94586 1.22299 0.97595 0.94925 0.97421 1.18541 0.94863 0.91479 0.90097 1.45558 1.28655 1.56108 1.07065 1.18437 0.81090 0.89103 0.94086 1.21968 0.92699 0.97540 1.44985 0.92649 1.25819 1.01841 0.96080 0.95420 1.70054 1.23678 1.13648 1.49936 0.85541 0.78896 0.78704 0.78431 1.20356 1.20722 1.19002 1.21344 0.95411 0.94970 0.88228 1.23204 0.91864 1.03949 1.02127 1.23405 1.01773 0.99274 0.99903 1.23296 0.95450 0.99857 0.89997 1.67388 1.24303 1.08585 1.17962 0.91477 0.93033 0.89294 0.75168 0.81941 0.85525 0.99478 0.97440 0.92714 0.86850 0.86257 0.90439 0.90671 0.87479 0.83240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 9.39 71.98 0.68 -2.44 16 2 C 0.16 3.52 3.90 29.85 0.12 3.64 16 3 H 0.10 1.54 7.86 -2.39 -0.02 1.52 16 4 O -0.58 -14.17 13.30 -148.98 -1.98 -16.15 16 5 C 0.10 2.96 5.81 42.56 0.25 3.21 16 6 C -0.15 -4.45 9.70 22.34 0.22 -4.24 16 7 C -0.09 -3.45 10.04 22.59 0.23 -3.22 16 8 C 0.14 5.75 3.54 38.30 0.14 5.89 16 9 N -0.65 -27.86 2.75 -677.26 -1.86 -29.72 16 10 C 0.29 15.54 5.49 85.63 0.47 16.01 16 11 C -0.53 -29.75 9.39 25.60 0.24 -29.51 16 12 H 0.06 3.05 7.81 -2.91 -0.02 3.03 16 13 C 0.01 0.37 5.46 84.66 0.46 0.84 16 14 N -0.93 -55.93 13.29 21.45 0.28 -55.65 16 15 Si 0.96 44.28 29.54 68.60 2.03 46.31 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 17 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 19 C 0.11 3.81 6.57 44.99 0.30 4.10 16 20 C -0.17 -4.98 9.84 30.62 0.30 -4.68 16 21 C -0.20 -6.39 10.37 30.62 0.32 -6.07 16 22 C 0.07 2.77 11.05 84.85 0.94 3.71 16 23 N -0.47 -16.98 9.87 -183.35 -1.81 -18.79 16 24 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.05 1.20 7.94 -2.39 -0.02 1.18 16 26 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.40 5.03 9.08 -74.05 -0.67 4.36 16 28 H 0.16 3.60 7.94 -2.91 -0.02 3.58 16 29 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 30 H -0.01 -0.75 8.05 -2.39 -0.02 -0.77 16 31 H 0.01 0.42 8.07 -2.39 -0.02 0.41 16 32 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 33 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 34 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.08 2.39 7.00 -2.39 -0.02 2.37 16 36 H 0.07 2.56 8.07 -2.39 -0.02 2.54 16 37 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 38 H 0.15 5.50 8.06 -2.91 -0.02 5.48 16 Total: -1.00 -69.03 327.56 1.68 -67.35 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.38 Total: 19.41 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: 4.64 Total: -12.76 kcal Atomic # 7 Polarization: -100.77 SS G_CDS: -3.39 Total: -104.16 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -1.98 Total: -16.15 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -69.03 1.68 -67.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149627233.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.659 kcal (2) G-P(sol) polarization free energy of solvation -69.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds