Wall clock time and date at job start Mon Mar 30 2020 07:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35894 * 117.00158 * 2 1 4 4 C 1.38676 * 119.97853 * 359.73077 * 3 2 1 5 5 C 1.38850 * 120.01640 * 180.27621 * 4 3 2 6 6 N 1.39659 * 120.01314 * 180.02562 * 5 4 3 7 7 C 1.38837 * 119.98327 * 0.02562 * 5 4 3 8 8 C 1.38795 * 119.96148 * 359.97438 * 7 5 4 9 9 N 1.39655 * 120.01122 * 179.97438 * 8 7 5 10 10 C 1.46505 * 119.99954 * 180.02562 * 9 8 7 11 11 C 1.50696 * 109.47216 * 89.99893 * 10 9 8 12 12 H 1.07991 * 120.00258 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99740 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00009 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 120.00235 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47236 * 89.99966 * 15 13 11 17 17 H 1.48498 * 109.47233 * 209.99719 * 15 13 11 18 18 H 1.48497 * 109.47081 * 329.99734 * 15 13 11 19 19 C 1.46497 * 120.00264 * 0.02562 * 9 8 7 20 20 C 1.53004 * 117.50412 * 188.74559 * 19 9 8 21 21 C 1.53002 * 117.50110 * 120.08758 * 19 9 8 22 22 C 1.38635 * 119.98026 * 179.97438 * 3 2 1 23 23 H 1.08996 * 109.47126 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46617 * 300.00106 * 1 2 3 25 25 H 1.08999 * 109.46751 * 59.99585 * 1 2 3 26 26 H 1.08003 * 119.99552 * 0.24799 * 4 3 2 27 27 H 0.97000 * 120.00420 * 180.02562 * 6 5 4 28 28 H 0.97002 * 119.99965 * 0.02562 * 6 5 4 29 29 H 1.08002 * 120.02082 * 180.02562 * 7 5 4 30 30 H 1.09004 * 109.47016 * 209.99857 * 10 9 8 31 31 H 1.09002 * 109.47006 * 329.99552 * 10 9 8 32 32 H 0.96998 * 120.00058 * 180.02562 * 14 13 11 33 33 H 1.08996 * 115.55009 * 334.41921 * 19 9 8 34 34 H 1.09004 * 117.49131 * 0.02562 * 20 19 9 35 35 H 1.09001 * 117.49917 * 145.01671 * 20 19 9 36 36 H 1.09004 * 117.49719 * 214.98476 * 21 19 9 37 37 H 1.08995 * 117.49619 * 359.97438 * 21 19 9 38 38 H 1.08004 * 119.98816 * 359.72883 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2904 2.3736 -0.0056 5 6 1.9200 3.6111 -0.0114 6 7 1.1589 4.7821 -0.0166 7 6 3.3064 3.6842 -0.0121 8 6 4.0619 2.5200 -0.0065 9 7 5.4566 2.5923 -0.0077 10 6 6.2539 1.3632 -0.0023 11 6 6.5263 0.9349 -1.4212 12 1 6.1443 1.5199 -2.2446 13 6 7.2643 -0.2033 -1.6681 14 7 7.5017 -0.5774 -2.9063 15 14 7.9258 -1.2148 -0.2437 16 1 6.9267 -2.2452 0.1378 17 1 9.1896 -1.8785 -0.6528 18 1 8.1868 -0.3251 0.9161 19 6 6.1225 3.8972 -0.0144 20 6 7.6383 3.9159 -0.2218 21 6 7.0503 4.2229 1.1577 22 6 3.4305 1.2829 0.0005 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.2119 2.3166 -0.0060 27 1 1.5988 5.6466 -0.0210 28 1 0.1902 4.7309 -0.0157 29 1 3.7968 4.6465 -0.0162 30 1 7.1986 1.5452 0.5101 31 1 5.7053 0.5765 0.5157 32 1 8.0205 -1.3783 -3.0800 33 1 5.5458 4.7170 -0.4426 34 1 8.1400 2.9573 -0.3537 35 1 8.0588 4.7482 -0.7862 36 1 7.0843 5.2571 1.5004 37 1 7.1650 3.4665 1.9340 38 1 4.0182 0.3767 0.0054 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156584245.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:48 Heat of formation + Delta-G solvation = 30.744652 kcal Electronic energy + Delta-G solvation = -19811.518229 eV Core-core repulsion = 16848.489356 eV Total energy + Delta-G solvation = -2963.028872 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.69128 -38.21621 -36.84921 -34.53107 -32.91426 -31.80920 -29.48986 -28.33560 -26.88193 -26.55561 -22.95320 -22.05710 -21.74920 -20.97449 -19.26313 -17.77622 -16.94965 -16.81755 -15.62900 -15.31980 -15.30445 -15.16302 -15.05220 -14.20006 -13.83511 -13.78334 -12.91945 -12.75170 -12.52901 -12.10925 -11.93329 -11.64728 -11.46505 -11.19917 -10.98189 -10.88698 -10.81065 -10.51602 -10.25929 -10.00616 -9.85575 -9.70826 -9.37531 -8.58984 -8.28483 -7.10013 -6.42411 -6.07715 -4.06617 2.24439 2.36721 3.27316 3.33773 3.35679 3.55367 4.02398 4.19356 4.33896 4.38420 4.65586 5.22275 5.29481 5.32644 5.37393 5.38011 5.50567 5.56072 5.69156 5.82691 5.92421 6.01086 6.06638 6.20234 6.31418 6.43820 6.66952 6.68912 6.73298 6.85320 6.90563 7.15460 7.17639 7.59299 7.66625 7.97129 8.08506 8.13165 8.39715 8.57295 9.01661 9.52280 11.05451 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.015732 B = 0.007554 C = 0.005577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.395248 B = 3705.729039 C = 5019.460945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.317 6.317 3 C 0.202 3.798 4 C -0.348 4.348 5 C 0.280 3.720 6 N -0.881 5.881 7 C -0.312 4.312 8 C 0.311 3.689 9 N -0.572 5.572 10 C 0.218 3.782 11 C -0.527 4.527 12 H 0.078 0.922 13 C 0.074 3.926 14 N -0.895 5.895 15 Si 0.867 3.133 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.266 1.266 19 C 0.099 3.901 20 C -0.179 4.179 21 C -0.209 4.209 22 C -0.263 4.263 23 H 0.091 0.909 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.113 0.887 27 H 0.394 0.606 28 H 0.392 0.608 29 H 0.114 0.886 30 H 0.030 0.970 31 H 0.030 0.970 32 H 0.264 0.736 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.500 8.692 7.747 15.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.230 6.230 3 C 0.156 3.844 4 C -0.373 4.373 5 C 0.175 3.825 6 N -0.420 5.420 7 C -0.340 4.340 8 C 0.203 3.797 9 N -0.275 5.275 10 C 0.097 3.903 11 C -0.565 4.565 12 H 0.096 0.904 13 C -0.129 4.129 14 N -0.533 5.533 15 Si 0.694 3.306 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.191 1.191 19 C -0.007 4.007 20 C -0.216 4.216 21 C -0.248 4.248 22 C -0.287 4.287 23 H 0.110 0.890 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.131 0.869 27 H 0.221 0.779 28 H 0.219 0.781 29 H 0.132 0.868 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.068 8.269 7.629 15.097 hybrid contribution -0.019 -0.184 0.497 0.530 sum -10.087 8.085 8.126 15.269 Atomic orbital electron populations 1.22917 0.79467 1.02957 1.00915 1.86081 1.20514 1.27749 1.88645 1.18293 0.91333 0.82900 0.91908 1.20090 0.98456 0.91011 1.27757 1.16993 0.89961 0.85780 0.89767 1.42367 1.08040 1.05536 1.86080 1.19785 0.91380 0.97144 1.25688 1.17024 0.82975 0.92045 0.87641 1.46204 1.01503 1.04847 1.74924 1.19710 0.90587 0.81876 0.98139 1.21416 1.33631 1.10002 0.91475 0.90393 1.24860 0.95730 0.96964 0.95328 1.69896 1.39805 1.24905 1.18705 0.86983 0.79072 0.81278 0.83244 1.19821 1.21014 1.19068 1.21282 0.90670 0.87543 1.01192 1.23346 0.96007 1.04180 0.98096 1.23444 1.06902 1.01620 0.92881 1.19705 0.91068 0.97712 1.20231 0.89018 0.93180 0.93044 0.86947 0.77878 0.78099 0.86788 0.95267 0.95182 0.92593 0.86692 0.86816 0.88931 0.89177 0.89108 0.84823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.81 101.05 0.99 1.39 16 2 O -0.32 -5.67 10.49 -19.41 -0.20 -5.88 16 3 C 0.20 3.88 6.68 -39.27 -0.26 3.61 16 4 C -0.35 -5.75 8.88 -39.19 -0.35 -6.10 16 5 C 0.28 4.46 6.75 -83.84 -0.57 3.89 16 6 N -0.88 -10.02 9.09 32.38 0.29 -9.73 16 7 C -0.31 -5.55 9.13 -39.15 -0.36 -5.91 16 8 C 0.31 6.45 6.55 -83.85 -0.55 5.90 16 9 N -0.57 -12.14 2.93 -165.59 -0.48 -12.63 16 10 C 0.22 5.19 3.28 -5.19 -0.02 5.17 16 11 C -0.53 -14.71 9.74 -34.44 -0.34 -15.05 16 12 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 13 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 14 N -0.89 -27.24 13.96 55.43 0.77 -26.47 16 15 Si 0.87 21.08 27.47 -169.99 -4.67 16.41 16 16 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 19 C 0.10 1.78 5.97 -67.93 -0.41 1.37 16 20 C -0.18 -3.08 9.72 -26.69 -0.26 -3.34 16 21 C -0.21 -3.24 10.13 -26.70 -0.27 -3.51 16 22 C -0.26 -5.69 9.14 -39.19 -0.36 -6.05 16 23 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.05 0.54 7.67 -51.93 -0.40 0.14 16 25 H 0.05 0.58 7.65 -51.93 -0.40 0.19 16 26 H 0.11 1.55 6.29 -52.48 -0.33 1.22 16 27 H 0.39 3.76 8.84 -40.82 -0.36 3.40 16 28 H 0.39 3.58 8.84 -40.82 -0.36 3.22 16 29 H 0.11 1.82 6.12 -52.49 -0.32 1.49 16 30 H 0.03 0.69 5.38 -51.93 -0.28 0.41 16 31 H 0.03 0.73 5.62 -51.93 -0.29 0.44 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.12 1.85 6.41 -51.93 -0.33 1.51 16 34 H 0.11 2.29 6.29 -51.93 -0.33 1.96 16 35 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 36 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.09 1.48 8.12 -51.93 -0.42 1.06 16 38 H 0.13 3.16 6.13 -52.48 -0.32 2.84 16 LS Contribution 310.06 15.07 4.67 4.67 Total: -1.00 -31.92 310.06 -7.45 -39.37 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -5.00 Total: 10.85 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -2.83 Total: -16.59 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: 0.58 Total: -48.83 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -0.20 Total: -5.88 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.92 -7.45 -39.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156584245.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.115 kcal (2) G-P(sol) polarization free energy of solvation -31.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds