Wall clock time and date at job start Mon Mar 30 2020 07:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35894 * 117.00158 * 2 1 4 4 C 1.38676 * 119.97853 * 359.73077 * 3 2 1 5 5 C 1.38850 * 120.01640 * 180.27621 * 4 3 2 6 6 N 1.39659 * 120.01314 * 180.02562 * 5 4 3 7 7 C 1.38837 * 119.98327 * 0.02562 * 5 4 3 8 8 C 1.38795 * 119.96148 * 359.97438 * 7 5 4 9 9 N 1.39655 * 120.01122 * 179.97438 * 8 7 5 10 10 C 1.46505 * 119.99954 * 180.02562 * 9 8 7 11 11 C 1.50696 * 109.47216 * 89.99893 * 10 9 8 12 12 H 1.07991 * 120.00258 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99740 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00009 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 120.00235 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47236 * 89.99966 * 15 13 11 17 17 H 1.48498 * 109.47233 * 209.99719 * 15 13 11 18 18 H 1.48497 * 109.47081 * 329.99734 * 15 13 11 19 19 C 1.46497 * 120.00264 * 0.02562 * 9 8 7 20 20 C 1.53004 * 117.50412 * 188.74559 * 19 9 8 21 21 C 1.53002 * 117.50110 * 120.08758 * 19 9 8 22 22 C 1.38635 * 119.98026 * 179.97438 * 3 2 1 23 23 H 1.08996 * 109.47126 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46617 * 300.00106 * 1 2 3 25 25 H 1.08999 * 109.46751 * 59.99585 * 1 2 3 26 26 H 1.08003 * 119.99552 * 0.24799 * 4 3 2 27 27 H 0.97000 * 120.00420 * 180.02562 * 6 5 4 28 28 H 0.97002 * 119.99965 * 0.02562 * 6 5 4 29 29 H 1.08002 * 120.02082 * 180.02562 * 7 5 4 30 30 H 1.09004 * 109.47016 * 209.99857 * 10 9 8 31 31 H 1.09002 * 109.47006 * 329.99552 * 10 9 8 32 32 H 0.96998 * 120.00058 * 180.02562 * 14 13 11 33 33 H 1.08996 * 115.55009 * 334.41921 * 19 9 8 34 34 H 1.09004 * 117.49131 * 0.02562 * 20 19 9 35 35 H 1.09001 * 117.49917 * 145.01671 * 20 19 9 36 36 H 1.09004 * 117.49719 * 214.98476 * 21 19 9 37 37 H 1.08995 * 117.49619 * 359.97438 * 21 19 9 38 38 H 1.08004 * 119.98816 * 359.72883 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2904 2.3736 -0.0056 5 6 1.9200 3.6111 -0.0114 6 7 1.1589 4.7821 -0.0166 7 6 3.3064 3.6842 -0.0121 8 6 4.0619 2.5200 -0.0065 9 7 5.4566 2.5923 -0.0077 10 6 6.2539 1.3632 -0.0023 11 6 6.5263 0.9349 -1.4212 12 1 6.1443 1.5199 -2.2446 13 6 7.2643 -0.2033 -1.6681 14 7 7.5017 -0.5774 -2.9063 15 14 7.9258 -1.2148 -0.2437 16 1 6.9267 -2.2452 0.1378 17 1 9.1896 -1.8785 -0.6528 18 1 8.1868 -0.3251 0.9161 19 6 6.1225 3.8972 -0.0144 20 6 7.6383 3.9159 -0.2218 21 6 7.0503 4.2229 1.1577 22 6 3.4305 1.2829 0.0005 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.2119 2.3166 -0.0060 27 1 1.5988 5.6466 -0.0210 28 1 0.1902 4.7309 -0.0157 29 1 3.7968 4.6465 -0.0162 30 1 7.1986 1.5452 0.5101 31 1 5.7053 0.5765 0.5157 32 1 8.0205 -1.3783 -3.0800 33 1 5.5458 4.7170 -0.4426 34 1 8.1400 2.9573 -0.3537 35 1 8.0588 4.7482 -0.7862 36 1 7.0843 5.2571 1.5004 37 1 7.1650 3.4665 1.9340 38 1 4.0182 0.3767 0.0054 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156584245.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:47 Heat of formation + Delta-G solvation = 8.494244 kcal Electronic energy + Delta-G solvation = -19812.483079 eV Core-core repulsion = 16848.489356 eV Total energy + Delta-G solvation = -2963.993723 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.06157 -39.62382 -38.14621 -35.90617 -34.87475 -33.36166 -31.15005 -29.60163 -28.56904 -27.71685 -24.77222 -23.44864 -23.08668 -22.37673 -20.73231 -19.18867 -19.01839 -18.14790 -16.95778 -16.77213 -16.69240 -16.51523 -16.21074 -16.00673 -15.28941 -15.16671 -14.58971 -14.31458 -14.06617 -13.57987 -13.55378 -13.13197 -12.88168 -12.64896 -12.47086 -12.30117 -12.18867 -12.13368 -11.85933 -11.81918 -11.50580 -11.17615 -11.04437 -10.80327 -9.63033 -8.38797 -8.31131 -7.94365 -6.34600 0.83758 0.95348 1.31464 1.33670 1.42382 2.19862 2.30345 2.68675 2.99157 3.02117 3.13539 3.24962 3.95721 4.04451 4.20811 4.31420 4.38471 4.46908 4.49073 4.56123 4.61054 4.75316 4.76859 4.83463 4.87345 4.92423 5.04123 5.18065 5.35468 5.39562 5.47027 5.51683 5.59348 5.77796 6.15816 6.50702 6.62901 6.72641 6.74887 6.91834 7.17100 7.29206 8.86159 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.015732 B = 0.007554 C = 0.005577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.395248 B = 3705.729039 C = 5019.460945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.345 6.345 3 C 0.198 3.802 4 C -0.344 4.344 5 C 0.290 3.710 6 N -0.858 5.858 7 C -0.317 4.317 8 C 0.290 3.710 9 N -0.586 5.586 10 C 0.233 3.767 11 C -0.522 4.522 12 H 0.027 0.973 13 C 0.015 3.985 14 N -0.945 5.945 15 Si 0.937 3.063 16 H -0.270 1.270 17 H -0.277 1.277 18 H -0.244 1.244 19 C 0.076 3.924 20 C -0.191 4.191 21 C -0.178 4.178 22 C -0.309 4.309 23 H 0.114 0.886 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.145 0.855 27 H 0.407 0.593 28 H 0.408 0.592 29 H 0.134 0.866 30 H 0.036 0.964 31 H 0.022 0.978 32 H 0.267 0.733 33 H 0.136 0.864 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.129 0.871 37 H 0.081 0.919 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.168 10.746 9.720 18.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.259 6.259 3 C 0.151 3.849 4 C -0.369 4.369 5 C 0.182 3.818 6 N -0.398 5.398 7 C -0.345 4.345 8 C 0.183 3.817 9 N -0.290 5.290 10 C 0.111 3.889 11 C -0.561 4.561 12 H 0.045 0.955 13 C -0.183 4.183 14 N -0.585 5.585 15 Si 0.760 3.240 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.168 1.168 19 C -0.029 4.029 20 C -0.229 4.229 21 C -0.216 4.216 22 C -0.333 4.333 23 H 0.132 0.868 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.163 0.837 27 H 0.237 0.763 28 H 0.237 0.763 29 H 0.152 0.848 30 H 0.054 0.946 31 H 0.040 0.960 32 H 0.076 0.924 33 H 0.153 0.847 34 H 0.096 0.904 35 H 0.135 0.865 36 H 0.147 0.853 37 H 0.099 0.901 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.791 10.389 9.617 18.425 hybrid contribution 0.298 -0.749 -0.199 0.830 sum -11.493 9.641 9.418 17.712 Atomic orbital electron populations 1.23293 0.76496 1.05088 1.02297 1.86043 1.23664 1.27687 1.88471 1.18397 0.90769 0.84313 0.91453 1.20365 0.99885 0.90172 1.26475 1.17071 0.89702 0.87102 0.87919 1.42285 1.08757 1.04664 1.84081 1.19952 0.92181 0.96765 1.25596 1.17300 0.82940 0.92852 0.88570 1.46142 1.01850 1.04989 1.76067 1.19294 0.91112 0.83413 0.95089 1.21538 1.32784 1.09408 0.92369 0.95471 1.25762 0.96101 0.98271 0.98197 1.70053 1.41320 1.25873 1.21262 0.85869 0.78385 0.79585 0.80149 1.19573 1.20175 1.16793 1.21658 0.90954 0.86644 1.03629 1.23323 0.95584 1.03403 1.00575 1.23474 1.03444 1.03408 0.91303 1.19654 0.92501 0.96924 1.24251 0.86770 0.91284 0.91943 0.83727 0.76335 0.76256 0.84805 0.94577 0.95965 0.92414 0.84693 0.90429 0.86542 0.85291 0.90081 0.88658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 9.81 113.37 1.11 1.62 16 2 O -0.35 -12.40 10.49 -92.36 -0.97 -13.37 16 3 C 0.20 7.62 6.68 22.47 0.15 7.77 16 4 C -0.34 -10.60 8.88 22.52 0.20 -10.40 16 5 C 0.29 8.44 6.75 38.18 0.26 8.70 16 6 N -0.86 -15.84 9.09 -51.46 -0.47 -16.30 16 7 C -0.32 -10.81 9.13 22.55 0.21 -10.60 16 8 C 0.29 12.28 6.55 38.19 0.25 12.53 16 9 N -0.59 -25.56 2.93 -677.80 -1.98 -27.55 16 10 C 0.23 11.60 3.28 85.63 0.28 11.88 16 11 C -0.52 -30.96 9.74 25.60 0.25 -30.71 16 12 H 0.03 1.83 8.06 -2.92 -0.02 1.81 16 13 C 0.01 0.87 5.47 84.65 0.46 1.33 16 14 N -0.94 -60.34 13.96 21.45 0.30 -60.04 16 15 Si 0.94 44.89 27.47 68.60 1.88 46.78 16 16 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 17 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 18 H -0.24 -10.76 6.54 99.48 0.65 -10.11 16 19 C 0.08 2.66 5.97 44.99 0.27 2.93 16 20 C -0.19 -6.49 9.72 30.62 0.30 -6.20 16 21 C -0.18 -5.09 10.13 30.62 0.31 -4.78 16 22 C -0.31 -14.03 9.14 22.52 0.21 -13.83 16 23 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.07 1.28 7.67 -2.39 -0.02 1.26 16 25 H 0.06 1.26 7.65 -2.39 -0.02 1.24 16 26 H 0.15 3.42 6.29 -2.91 -0.02 3.40 16 27 H 0.41 5.91 8.84 -92.71 -0.82 5.09 16 28 H 0.41 5.46 8.84 -92.71 -0.82 4.64 16 29 H 0.13 3.90 6.12 -2.91 -0.02 3.88 16 30 H 0.04 1.74 5.38 -2.38 -0.01 1.72 16 31 H 0.02 1.15 5.62 -2.39 -0.01 1.13 16 32 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 33 H 0.14 4.08 6.41 -2.39 -0.02 4.06 16 34 H 0.08 3.22 6.29 -2.38 -0.02 3.20 16 35 H 0.12 3.31 8.14 -2.39 -0.02 3.29 16 36 H 0.13 2.72 8.14 -2.38 -0.02 2.70 16 37 H 0.08 2.51 8.12 -2.39 -0.02 2.49 16 38 H 0.10 4.93 6.13 -2.91 -0.02 4.91 16 Total: -1.00 -75.03 310.06 2.42 -72.61 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: -0.59 Total: 27.63 kcal Atomic # 6 Polarization: -34.01 SS G_CDS: 4.25 Total: -29.75 kcal Atomic # 7 Polarization: -101.74 SS G_CDS: -2.15 Total: -103.89 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -0.97 Total: -13.37 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.78 kcal Total: -75.03 2.42 -72.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156584245.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.103 kcal (2) G-P(sol) polarization free energy of solvation -75.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds