Wall clock time and date at job start Mon Mar 30 2020 06:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47512 * 2 1 4 4 C 1.53008 * 109.46892 * 120.00267 * 2 1 3 5 5 N 1.46500 * 109.47081 * 175.00221 * 4 2 1 6 6 C 1.46503 * 119.99496 * 269.99373 * 5 4 2 7 7 C 1.50699 * 109.47129 * 269.99987 * 6 5 4 8 8 H 1.08004 * 120.00252 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99841 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99756 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 120.00197 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.46749 * 90.00169 * 11 9 7 13 13 H 1.48503 * 109.47144 * 209.99798 * 11 9 7 14 14 H 1.48499 * 109.47225 * 330.00504 * 11 9 7 15 15 C 1.38322 * 120.00287 * 89.99718 * 5 4 2 16 16 C 1.39490 * 119.50600 * 185.00025 * 15 5 4 17 17 C 1.36755 * 119.40585 * 179.97438 * 16 15 5 18 18 C 1.40644 * 118.47018 * 359.97438 * 17 16 15 19 19 C 1.46779 * 120.50248 * 179.97438 * 18 17 16 20 20 O 1.21308 * 119.99934 * 180.02562 * 19 18 17 21 21 C 1.39881 * 118.99570 * 0.02562 * 18 17 16 22 22 N 1.31603 * 120.48210 * 0.02562 * 21 18 17 23 23 H 1.09004 * 109.46941 * 300.00540 * 1 2 3 24 24 H 1.09004 * 109.46799 * 59.99995 * 1 2 3 25 25 H 1.08997 * 109.47439 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47350 * 239.99697 * 2 1 3 27 27 H 1.08999 * 109.47060 * 59.99519 * 3 2 1 28 28 H 1.09003 * 109.47178 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47093 * 299.99825 * 3 2 1 30 30 H 1.08992 * 109.47553 * 54.99453 * 4 2 1 31 31 H 1.09001 * 109.46470 * 294.99376 * 4 2 1 32 32 H 1.09002 * 109.47101 * 30.00187 * 6 5 4 33 33 H 1.08995 * 109.46924 * 150.00277 * 6 5 4 34 34 H 0.97008 * 119.99764 * 179.97438 * 10 9 7 35 35 H 1.08000 * 120.29522 * 0.24703 * 16 15 5 36 36 H 1.08000 * 120.76216 * 180.02562 * 17 16 15 37 37 H 1.07998 * 120.00275 * 359.97438 * 19 18 17 38 38 H 1.08002 * 119.76162 * 179.97438 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2493 5 7 3.5000 -0.8265 1.1907 6 6 4.1257 -1.9921 0.5614 7 6 4.3419 -3.0661 1.5962 8 1 4.0428 -2.8975 2.6202 9 6 4.9217 -4.2640 1.2357 10 7 5.1099 -5.2014 2.1387 11 14 5.4384 -4.5560 -0.5355 12 1 6.8411 -4.1058 -0.7224 13 1 5.3376 -6.0042 -0.8482 14 1 4.5476 -3.7901 -1.4437 15 6 4.2877 0.1747 1.7295 16 6 5.6729 0.1166 1.5761 17 6 6.4497 1.1078 2.1093 18 6 5.8170 2.1583 2.7979 19 6 6.6076 3.2450 3.3882 20 8 6.0524 4.1463 3.9806 21 6 4.4229 2.1512 2.9126 22 7 3.7146 1.1759 2.3845 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.6767 1.9563 0.8899 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6053 -1.7198 1.2953 31 1 1.7516 -0.1583 2.1370 32 1 3.4756 -2.3723 -0.2266 33 1 5.0850 -1.7023 0.1326 34 1 5.5174 -6.0444 1.8850 35 1 6.1275 -0.7016 1.0373 36 1 7.5243 1.0849 2.0032 37 1 7.6836 3.2418 3.2959 38 1 3.9242 2.9515 3.4392 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161719873.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:22 Heat of formation + Delta-G solvation = 1.533447 kcal Electronic energy + Delta-G solvation = -19788.424989 eV Core-core repulsion = 16824.129423 eV Total energy + Delta-G solvation = -2964.295565 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.13688 -38.47455 -36.91674 -34.43214 -32.70832 -32.21091 -30.05841 -28.33585 -26.90779 -25.76619 -24.30029 -22.51859 -21.99749 -20.46459 -19.54854 -17.20310 -17.09101 -16.65204 -15.85551 -14.97253 -14.78143 -14.58623 -14.38760 -14.07195 -13.94125 -13.74018 -12.97822 -12.85780 -12.73085 -12.42716 -12.09300 -11.96401 -11.77681 -11.63171 -11.20457 -10.99992 -10.71544 -10.68353 -10.36455 -10.32452 -9.79181 -9.71931 -9.54444 -9.18938 -8.87777 -8.78144 -6.96575 -6.28219 -4.30557 1.09531 1.81657 2.84689 3.10885 3.18580 3.20116 3.54360 4.19140 4.35838 4.59026 4.85211 5.03385 5.12669 5.15144 5.19275 5.31547 5.45686 5.51121 5.77650 5.79048 5.87638 5.92260 6.07758 6.13748 6.16186 6.21472 6.27717 6.33140 6.41226 6.53109 6.55950 6.63368 6.66555 6.96818 7.33166 7.47018 7.70497 7.97699 8.25987 8.55923 8.78425 9.29551 10.84461 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.015031 B = 0.007130 C = 0.005295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.379884 B = 3926.202450 C = 5286.937638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.112 4.112 3 C -0.133 4.133 4 C 0.127 3.873 5 N -0.562 5.562 6 C 0.217 3.783 7 C -0.541 4.541 8 H 0.078 0.922 9 C 0.077 3.923 10 N -0.889 5.889 11 Si 0.871 3.129 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.265 1.265 15 C 0.449 3.551 16 C -0.243 4.243 17 C 0.009 3.991 18 C -0.342 4.342 19 C 0.397 3.603 20 O -0.491 6.491 21 C 0.216 3.784 22 N -0.560 5.560 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.040 0.960 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.037 0.963 33 H 0.032 0.968 34 H 0.267 0.733 35 H 0.142 0.858 36 H 0.132 0.868 37 H 0.091 0.909 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.353 10.970 -4.595 11.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C -0.190 4.190 4 C 0.003 3.997 5 N -0.264 5.264 6 C 0.096 3.904 7 C -0.580 4.580 8 H 0.096 0.904 9 C -0.127 4.127 10 N -0.526 5.526 11 Si 0.697 3.303 12 H -0.198 1.198 13 H -0.207 1.207 14 H -0.189 1.189 15 C 0.211 3.789 16 C -0.268 4.268 17 C -0.016 4.016 18 C -0.350 4.350 19 C 0.259 3.741 20 O -0.367 6.367 21 C 0.053 3.947 22 N -0.279 5.279 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.159 0.841 36 H 0.150 0.850 37 H 0.107 0.893 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.617 10.979 -4.314 12.083 hybrid contribution 1.370 -0.673 -1.012 1.831 sum -1.247 10.306 -5.326 11.667 Atomic orbital electron populations 1.21741 0.95005 1.01638 1.01528 1.21531 0.95501 0.97019 0.99161 1.21751 1.00938 0.95511 1.00827 1.21506 0.79556 1.00813 0.97777 1.46860 1.05012 1.18445 1.56134 1.19883 0.93600 0.82826 0.94058 1.21355 1.41762 0.98041 0.96805 0.90389 1.24865 0.94939 0.95665 0.97223 1.69890 1.42916 1.06137 1.33671 0.86933 0.79737 0.78234 0.85356 1.19787 1.20740 1.18919 1.18646 0.88247 0.86249 0.85799 1.21290 0.93077 1.03083 1.09356 1.21128 0.99588 0.90613 0.90299 1.21253 0.96440 1.02754 1.14533 1.23547 0.94182 0.82055 0.74345 1.90483 1.76178 1.35508 1.34524 1.22663 0.89874 0.92898 0.89229 1.67400 1.39849 1.04423 1.16197 0.92578 0.92962 0.92650 0.91563 0.92059 0.93216 0.94110 0.90412 0.89876 0.94477 0.95026 0.92266 0.84055 0.85041 0.89263 0.82751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.19 37.16 0.34 -1.34 16 2 C -0.11 -1.62 3.13 -90.62 -0.28 -1.90 16 3 C -0.13 -1.90 7.96 37.16 0.30 -1.61 16 4 C 0.13 2.17 5.01 -4.04 -0.02 2.15 16 5 N -0.56 -10.90 2.42 -175.24 -0.42 -11.33 16 6 C 0.22 4.67 4.06 -5.19 -0.02 4.65 16 7 C -0.54 -14.10 9.94 -34.44 -0.34 -14.44 16 8 H 0.08 2.31 8.06 -52.48 -0.42 1.89 16 9 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 10 N -0.89 -25.64 13.96 55.43 0.77 -24.87 16 11 Si 0.87 19.42 27.47 -169.99 -4.67 14.75 16 12 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 13 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 14 H -0.26 -5.57 6.54 56.52 0.37 -5.20 16 15 C 0.45 8.42 5.78 -155.33 -0.90 7.53 16 16 C -0.24 -4.27 9.20 -39.65 -0.36 -4.64 16 17 C 0.01 0.13 9.88 -39.21 -0.39 -0.26 16 18 C -0.34 -5.01 5.88 -104.92 -0.62 -5.63 16 19 C 0.40 5.11 11.46 34.18 0.39 5.50 16 20 O -0.49 -7.88 17.18 5.53 0.10 -7.78 16 21 C 0.22 3.45 10.77 -17.04 -0.18 3.27 16 22 N -0.56 -9.89 7.47 -12.07 -0.09 -9.98 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.06 0.89 7.95 -51.93 -0.41 0.47 16 28 H 0.05 0.80 6.13 -51.93 -0.32 0.48 16 29 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 31 H 0.08 1.43 7.28 -51.93 -0.38 1.05 16 32 H 0.04 0.79 7.13 -51.93 -0.37 0.42 16 33 H 0.03 0.66 5.36 -51.93 -0.28 0.38 16 34 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.14 2.56 5.98 -52.49 -0.31 2.24 16 36 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.09 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.16 2.26 7.65 -52.49 -0.40 1.86 16 LS Contribution 315.72 15.07 4.76 4.76 Total: -1.00 -29.45 315.72 -7.18 -36.64 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -5.44 Total: 2.58 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -2.19 Total: -4.77 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.26 Total: -46.17 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: 0.10 Total: -7.78 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -4.67 Total: 14.75 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.45 -7.18 -36.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161719873.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.171 kcal (2) G-P(sol) polarization free energy of solvation -29.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds