Wall clock time and date at job start Mon Mar 30 2020 06:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47512 * 2 1 4 4 C 1.53008 * 109.46892 * 120.00267 * 2 1 3 5 5 N 1.46500 * 109.47081 * 175.00221 * 4 2 1 6 6 C 1.46503 * 119.99496 * 269.99373 * 5 4 2 7 7 C 1.50699 * 109.47129 * 269.99987 * 6 5 4 8 8 H 1.08004 * 120.00252 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99841 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99756 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 120.00197 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.46749 * 90.00169 * 11 9 7 13 13 H 1.48503 * 109.47144 * 209.99798 * 11 9 7 14 14 H 1.48499 * 109.47225 * 330.00504 * 11 9 7 15 15 C 1.38322 * 120.00287 * 89.99718 * 5 4 2 16 16 C 1.39490 * 119.50600 * 185.00025 * 15 5 4 17 17 C 1.36755 * 119.40585 * 179.97438 * 16 15 5 18 18 C 1.40644 * 118.47018 * 359.97438 * 17 16 15 19 19 C 1.46779 * 120.50248 * 179.97438 * 18 17 16 20 20 O 1.21308 * 119.99934 * 180.02562 * 19 18 17 21 21 C 1.39881 * 118.99570 * 0.02562 * 18 17 16 22 22 N 1.31603 * 120.48210 * 0.02562 * 21 18 17 23 23 H 1.09004 * 109.46941 * 300.00540 * 1 2 3 24 24 H 1.09004 * 109.46799 * 59.99995 * 1 2 3 25 25 H 1.08997 * 109.47439 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47350 * 239.99697 * 2 1 3 27 27 H 1.08999 * 109.47060 * 59.99519 * 3 2 1 28 28 H 1.09003 * 109.47178 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47093 * 299.99825 * 3 2 1 30 30 H 1.08992 * 109.47553 * 54.99453 * 4 2 1 31 31 H 1.09001 * 109.46470 * 294.99376 * 4 2 1 32 32 H 1.09002 * 109.47101 * 30.00187 * 6 5 4 33 33 H 1.08995 * 109.46924 * 150.00277 * 6 5 4 34 34 H 0.97008 * 119.99764 * 179.97438 * 10 9 7 35 35 H 1.08000 * 120.29522 * 0.24703 * 16 15 5 36 36 H 1.08000 * 120.76216 * 180.02562 * 17 16 15 37 37 H 1.07998 * 120.00275 * 359.97438 * 19 18 17 38 38 H 1.08002 * 119.76162 * 179.97438 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2493 5 7 3.5000 -0.8265 1.1907 6 6 4.1257 -1.9921 0.5614 7 6 4.3419 -3.0661 1.5962 8 1 4.0428 -2.8975 2.6202 9 6 4.9217 -4.2640 1.2357 10 7 5.1099 -5.2014 2.1387 11 14 5.4384 -4.5560 -0.5355 12 1 6.8411 -4.1058 -0.7224 13 1 5.3376 -6.0042 -0.8482 14 1 4.5476 -3.7901 -1.4437 15 6 4.2877 0.1747 1.7295 16 6 5.6729 0.1166 1.5761 17 6 6.4497 1.1078 2.1093 18 6 5.8170 2.1583 2.7979 19 6 6.6076 3.2450 3.3882 20 8 6.0524 4.1463 3.9806 21 6 4.4229 2.1512 2.9126 22 7 3.7146 1.1759 2.3845 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.6767 1.9563 0.8899 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6053 -1.7198 1.2953 31 1 1.7516 -0.1583 2.1370 32 1 3.4756 -2.3723 -0.2266 33 1 5.0850 -1.7023 0.1326 34 1 5.5174 -6.0444 1.8850 35 1 6.1275 -0.7016 1.0373 36 1 7.5243 1.0849 2.0032 37 1 7.6836 3.2418 3.2959 38 1 3.9242 2.9515 3.4392 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161719873.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:22 Heat of formation + Delta-G solvation = -15.089242 kcal Electronic energy + Delta-G solvation = -19789.145803 eV Core-core repulsion = 16824.129423 eV Total energy + Delta-G solvation = -2965.016379 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.42943 -39.67699 -38.21088 -35.84515 -34.50097 -33.56614 -31.43443 -29.99709 -28.00054 -27.04250 -25.78175 -23.95360 -23.34866 -21.71837 -20.81879 -19.08488 -18.55483 -17.89742 -17.17114 -16.38489 -16.19918 -15.88994 -15.76543 -15.36253 -15.23056 -15.04270 -14.53379 -14.15383 -14.04769 -13.86751 -13.45860 -13.30289 -13.11119 -12.91944 -12.59678 -12.54534 -12.30042 -11.91308 -11.82222 -11.70061 -11.57389 -10.93519 -10.84068 -10.80849 -10.61438 -10.10971 -8.39512 -8.32222 -6.41673 -0.11237 0.55400 1.36879 1.38426 1.48251 1.71437 2.13452 2.30772 2.99843 3.08510 3.55130 3.64408 3.90486 4.01239 4.06451 4.15617 4.20649 4.29042 4.59090 4.66098 4.68532 4.73285 4.78041 4.84561 4.95753 4.98412 5.04447 5.07972 5.14917 5.21127 5.29985 5.39707 5.43543 5.47035 5.71137 5.91527 6.30486 6.57486 6.62918 6.66811 7.16720 7.28223 8.83096 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.015031 B = 0.007130 C = 0.005295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.379884 B = 3926.202450 C = 5286.937638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 C -0.123 4.123 4 C 0.128 3.872 5 N -0.578 5.578 6 C 0.230 3.770 7 C -0.541 4.541 8 H 0.023 0.977 9 C 0.018 3.982 10 N -0.944 5.944 11 Si 0.944 3.056 12 H -0.259 1.259 13 H -0.284 1.284 14 H -0.241 1.241 15 C 0.427 3.573 16 C -0.269 4.269 17 C 0.026 3.974 18 C -0.337 4.337 19 C 0.409 3.591 20 O -0.521 6.521 21 C 0.198 3.802 22 N -0.570 5.570 23 H 0.058 0.942 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.029 0.971 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.044 0.956 33 H 0.045 0.955 34 H 0.269 0.731 35 H 0.133 0.867 36 H 0.176 0.824 37 H 0.148 0.852 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.105 12.707 -6.426 14.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.125 4.125 3 C -0.180 4.180 4 C 0.005 3.995 5 N -0.283 5.283 6 C 0.108 3.892 7 C -0.579 4.579 8 H 0.042 0.958 9 C -0.181 4.181 10 N -0.583 5.583 11 Si 0.767 3.233 12 H -0.183 1.183 13 H -0.210 1.210 14 H -0.164 1.164 15 C 0.191 3.809 16 C -0.294 4.294 17 C 0.001 3.999 18 C -0.344 4.344 19 C 0.272 3.728 20 O -0.399 6.399 21 C 0.036 3.964 22 N -0.288 5.288 23 H 0.077 0.923 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.151 0.849 36 H 0.194 0.806 37 H 0.164 0.836 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.376 12.771 -6.132 14.234 hybrid contribution 1.012 -1.094 -0.259 1.513 sum -0.364 11.677 -6.391 13.316 Atomic orbital electron populations 1.21705 0.92931 1.02156 1.02569 1.21465 0.97121 0.96616 0.97273 1.21640 0.99545 0.95426 1.01382 1.21537 0.78786 1.00165 0.98989 1.46742 1.05680 1.18403 1.57455 1.19576 0.94502 0.82386 0.92738 1.21517 1.41087 0.99769 0.95537 0.95846 1.25827 0.94822 0.95090 1.02372 1.70065 1.44721 1.06970 1.36550 0.85765 0.80240 0.78090 0.79246 1.18335 1.20991 1.16390 1.18852 0.88891 0.86610 0.86569 1.21413 0.92950 1.04211 1.10852 1.21553 1.01517 0.88812 0.88025 1.21645 0.96065 1.03306 1.13412 1.24154 0.96010 0.80170 0.72459 1.90495 1.77172 1.36492 1.35735 1.22981 0.91133 0.92817 0.89465 1.67354 1.40552 1.04632 1.16302 0.92268 0.91145 0.92447 0.92018 0.92630 0.95198 0.92261 0.91935 0.90723 0.93782 0.93679 0.92197 0.84933 0.80623 0.83589 0.81948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.19 71.98 0.66 -2.40 16 2 C -0.11 -2.97 3.13 -10.79 -0.03 -3.01 16 3 C -0.12 -3.40 7.96 71.98 0.57 -2.83 16 4 C 0.13 4.51 5.01 86.38 0.43 4.95 16 5 N -0.58 -22.98 2.42 -708.33 -1.72 -24.70 16 6 C 0.23 9.96 4.06 85.63 0.35 10.31 16 7 C -0.54 -29.24 9.94 25.60 0.25 -28.98 16 8 H 0.02 1.48 8.06 -2.91 -0.02 1.45 16 9 C 0.02 0.96 5.47 84.65 0.46 1.42 16 10 N -0.94 -56.41 13.96 21.45 0.30 -56.11 16 11 Si 0.94 39.77 27.47 68.60 1.88 41.65 16 12 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 13 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 14 H -0.24 -9.14 6.54 99.48 0.65 -8.49 16 15 C 0.43 16.22 5.78 133.30 0.77 16.99 16 16 C -0.27 -9.26 9.20 22.22 0.20 -9.06 16 17 C 0.03 0.67 9.88 22.51 0.22 0.89 16 18 C -0.34 -9.03 5.88 -20.06 -0.12 -9.15 16 19 C 0.41 8.97 11.46 70.05 0.80 9.77 16 20 O -0.52 -15.40 17.18 -3.12 -0.05 -15.45 16 21 C 0.20 6.18 10.77 85.13 0.92 7.10 16 22 N -0.57 -20.30 7.47 -192.11 -1.43 -21.73 16 23 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 24 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 25 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.05 1.58 7.95 -2.39 -0.02 1.56 16 28 H 0.03 0.94 6.13 -2.39 -0.01 0.92 16 29 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.06 2.31 8.07 -2.39 -0.02 2.29 16 31 H 0.07 2.69 7.28 -2.39 -0.02 2.67 16 32 H 0.04 1.84 7.13 -2.39 -0.02 1.83 16 33 H 0.05 1.85 5.36 -2.39 -0.01 1.83 16 34 H 0.27 14.96 8.31 -92.70 -0.77 14.19 16 35 H 0.13 4.73 5.98 -2.91 -0.02 4.71 16 36 H 0.18 2.95 8.06 -2.91 -0.02 2.93 16 37 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 38 H 0.16 4.69 7.65 -2.91 -0.02 4.66 16 Total: -1.00 -67.40 315.72 5.46 -61.94 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 0.99 Total: 18.39 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: 5.50 Total: -3.99 kcal Atomic # 7 Polarization: -99.69 SS G_CDS: -2.85 Total: -102.54 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.05 Total: -15.45 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 1.88 Total: 41.65 kcal Total: -67.40 5.46 -61.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161719873.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.851 kcal (2) G-P(sol) polarization free energy of solvation -67.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds