Wall clock time and date at job start Mon Mar 30 2020 06:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47317 * 2 1 4 4 C 1.53001 * 109.47605 * 120.00212 * 2 1 3 5 5 C 1.50706 * 109.46607 * 294.99754 * 4 2 1 6 6 C 1.38238 * 119.99744 * 90.00198 * 5 4 2 7 7 C 1.38234 * 119.99693 * 179.97438 * 6 5 4 8 8 C 1.38234 * 120.00240 * 359.97438 * 7 6 5 9 9 C 1.38233 * 120.00037 * 0.26327 * 8 7 6 10 10 C 1.38234 * 120.00173 * 269.97579 * 5 4 2 11 11 C 1.50703 * 109.47001 * 239.99900 * 2 1 3 12 12 O 1.20825 * 120.00308 * 239.99764 * 11 2 1 13 13 O 1.34227 * 119.99893 * 60.00054 * 11 2 1 14 14 C 1.45197 * 117.00288 * 179.97438 * 13 11 2 15 15 C 1.52998 * 109.47670 * 179.97438 * 14 13 11 16 16 C 1.50692 * 109.47418 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00283 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00086 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99960 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00112 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47174 * 90.00242 * 20 18 16 22 22 H 1.48504 * 109.47047 * 210.00166 * 20 18 16 23 23 H 1.48494 * 109.47385 * 330.00016 * 20 18 16 24 24 H 1.09007 * 109.46972 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46738 * 299.99568 * 1 2 3 26 26 H 1.08998 * 109.47178 * 59.99879 * 1 2 3 27 27 H 1.08997 * 109.47212 * 175.00457 * 4 2 1 28 28 H 1.08995 * 109.47163 * 54.99867 * 4 2 1 29 29 H 1.07997 * 119.99846 * 359.97438 * 6 5 4 30 30 H 1.07999 * 119.99751 * 179.97438 * 7 6 5 31 31 H 1.08002 * 119.99744 * 179.97438 * 8 7 6 32 32 H 1.07998 * 120.00395 * 179.72811 * 9 8 7 33 33 H 1.07999 * 120.00025 * 0.02562 * 10 5 4 34 34 H 1.09000 * 109.47241 * 300.00465 * 14 13 11 35 35 H 1.09006 * 109.46571 * 60.00199 * 14 13 11 36 36 H 1.09000 * 109.47493 * 300.00709 * 15 14 13 37 37 H 1.09002 * 109.46483 * 59.99897 * 15 14 13 38 38 H 0.96999 * 119.99899 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 0.0571 2.4765 6 6 0.4357 -0.2050 3.0998 7 6 0.0703 0.5086 4.2259 8 6 0.9108 1.4839 4.7291 9 6 2.1143 1.7494 4.1030 10 6 2.4817 1.0328 2.9794 11 6 2.0323 -0.7104 -1.2305 12 8 2.7269 -1.6928 -1.1197 13 8 1.7080 -0.2519 -2.4496 14 6 2.2275 -0.9857 -3.5897 15 6 1.7554 -0.3193 -4.8835 16 6 2.2941 -1.0813 -6.0666 17 1 2.9112 -1.9539 -5.9115 18 6 1.9992 -0.6644 -7.3474 19 7 1.2482 0.3985 -7.5364 20 14 2.6665 -1.6094 -8.8141 21 1 1.6997 -2.6677 -9.2025 22 1 2.8655 -0.6784 -9.9538 23 1 3.9644 -2.2333 -8.4521 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 3.1264 -0.7994 1.2055 28 1 1.6055 -1.7198 1.2951 29 1 -0.2208 -0.9672 2.7068 30 1 -0.8719 0.3042 4.7125 31 1 0.6250 2.0417 5.6087 32 1 2.7690 2.5144 4.4935 33 1 3.4238 1.2375 2.4926 34 1 3.3170 -0.9846 -3.5566 35 1 1.8640 -2.0128 -3.5569 36 1 0.6659 -0.3206 -4.9163 37 1 2.1185 0.7080 -4.9164 38 1 1.0411 0.6920 -8.4374 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171846355.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:15 Heat of formation + Delta-G solvation = -90.455993 kcal Electronic energy + Delta-G solvation = -18625.576682 eV Core-core repulsion = 15624.999405 eV Total energy + Delta-G solvation = -3000.577278 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.28088 -39.36032 -36.35005 -35.02805 -33.34084 -31.26380 -31.04748 -30.11983 -26.88134 -25.39175 -23.82416 -22.70031 -21.54410 -20.82599 -19.75395 -17.49884 -16.82762 -16.29923 -16.01320 -15.86651 -15.36458 -15.18616 -14.52267 -14.19611 -13.68864 -13.57554 -13.22547 -12.90317 -12.66310 -12.49805 -12.35060 -12.07221 -11.44500 -11.29591 -11.20275 -11.14824 -11.01629 -10.99778 -10.74696 -10.66859 -10.11364 -9.63440 -9.59482 -9.29647 -9.10735 -8.88587 -8.44618 -6.10674 -4.15032 1.13437 1.19814 2.59172 3.16468 3.28299 3.34478 3.39021 3.61274 4.38326 4.62395 4.62732 4.75834 4.81168 4.89922 4.92621 5.11916 5.25879 5.29374 5.30793 5.43440 5.60192 5.67811 5.74960 5.83697 5.88083 6.03985 6.09909 6.11428 6.16612 6.26560 6.30891 6.46320 6.64417 6.80302 7.02249 7.56103 7.62444 7.86767 8.19711 8.27915 8.90609 9.49390 11.00877 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.054201 B = 0.002971 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.468058 B = 9422.698954 C = 9535.402590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.078 4.078 3 H 0.107 0.893 4 C -0.068 4.068 5 C -0.076 4.076 6 C -0.114 4.114 7 C -0.120 4.120 8 C -0.126 4.126 9 C -0.119 4.119 10 C -0.116 4.116 11 C 0.458 3.542 12 O -0.519 6.519 13 O -0.355 6.355 14 C 0.074 3.926 15 C 0.025 3.975 16 C -0.526 4.526 17 H 0.059 0.941 18 C 0.061 3.939 19 N -0.890 5.890 20 Si 0.900 3.100 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.272 1.272 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.028 0.972 37 H 0.028 0.972 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.828 2.283 23.133 23.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.097 4.097 3 H 0.125 0.875 4 C -0.105 4.105 5 C -0.076 4.076 6 C -0.132 4.132 7 C -0.138 4.138 8 C -0.144 4.144 9 C -0.137 4.137 10 C -0.134 4.134 11 C 0.301 3.699 12 O -0.409 6.409 13 O -0.271 6.271 14 C 0.002 3.998 15 C -0.012 4.012 16 C -0.565 4.565 17 H 0.077 0.923 18 C -0.142 4.142 19 N -0.529 5.529 20 Si 0.727 3.273 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.197 1.197 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.697 2.099 22.960 23.118 hybrid contribution 0.428 -0.527 -0.904 1.131 sum -1.269 1.572 22.056 22.149 Atomic orbital electron populations 1.21849 0.92068 1.02923 1.03596 1.20955 0.98482 1.00835 0.89466 0.87526 1.20503 1.02381 0.98271 0.89355 1.19852 0.94632 0.96697 0.96439 1.21123 0.96191 1.00047 0.95791 1.21149 0.99652 0.96492 0.96541 1.21144 0.94821 0.98349 1.00135 1.21146 0.96867 0.99660 0.96047 1.21121 0.99762 0.95923 0.96573 1.23529 0.77567 0.82904 0.85854 1.90619 1.36203 1.26291 1.87787 1.86522 1.69297 1.56225 1.15067 1.23634 0.98051 0.95261 0.82860 1.19162 0.97821 0.96804 0.87452 1.20985 1.32436 1.12687 0.90352 0.92279 1.24985 0.95004 0.95093 0.99083 1.69974 1.36967 1.23957 1.21972 0.86472 0.79419 0.79605 0.81817 1.20469 1.21037 1.19726 0.92132 0.91045 0.90746 0.89849 0.89999 0.85883 0.86146 0.86307 0.86142 0.85938 0.92380 0.92386 0.95375 0.95373 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.69 37.16 0.32 -1.33 16 2 C -0.08 -0.99 2.82 -91.77 -0.26 -1.25 16 3 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 4 C -0.07 -0.76 4.19 -27.88 -0.12 -0.88 16 5 C -0.08 -0.76 4.71 -104.62 -0.49 -1.26 16 6 C -0.11 -1.04 7.96 -39.58 -0.32 -1.36 16 7 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 8 C -0.13 -1.02 10.05 -39.58 -0.40 -1.42 16 9 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 10 C -0.12 -1.10 9.70 -39.58 -0.38 -1.48 16 11 C 0.46 7.99 7.26 36.01 0.26 8.25 16 12 O -0.52 -10.25 15.67 -18.75 -0.29 -10.54 16 13 O -0.36 -7.16 10.12 -39.25 -0.40 -7.55 16 14 C 0.07 1.68 5.40 37.16 0.20 1.88 16 15 C 0.02 0.65 5.35 -27.89 -0.15 0.50 16 16 C -0.53 -14.92 9.11 -34.44 -0.31 -15.23 16 17 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 20 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.68 6.27 -51.93 -0.33 0.36 16 26 H 0.07 0.91 8.11 -51.93 -0.42 0.48 16 27 H 0.08 0.98 7.90 -51.93 -0.41 0.57 16 28 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 29 H 0.12 0.99 8.04 -52.49 -0.42 0.57 16 30 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 31 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 32 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 35 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 326.26 15.07 4.92 4.92 Total: -1.00 -31.46 326.26 -8.36 -39.82 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -5.77 Total: -2.61 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: -2.54 Total: -14.74 kcal Atomic # 7 Polarization: -26.49 SS G_CDS: 0.74 Total: -25.75 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.69 Total: -18.10 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.46 -8.36 -39.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171846355.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.634 kcal (2) G-P(sol) polarization free energy of solvation -31.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds