Wall clock time and date at job start Mon Mar 30 2020 06:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47317 * 2 1 4 4 C 1.53001 * 109.47605 * 120.00212 * 2 1 3 5 5 C 1.50706 * 109.46607 * 294.99754 * 4 2 1 6 6 C 1.38238 * 119.99744 * 90.00198 * 5 4 2 7 7 C 1.38234 * 119.99693 * 179.97438 * 6 5 4 8 8 C 1.38234 * 120.00240 * 359.97438 * 7 6 5 9 9 C 1.38233 * 120.00037 * 0.26327 * 8 7 6 10 10 C 1.38234 * 120.00173 * 269.97579 * 5 4 2 11 11 C 1.50703 * 109.47001 * 239.99900 * 2 1 3 12 12 O 1.20825 * 120.00308 * 239.99764 * 11 2 1 13 13 O 1.34227 * 119.99893 * 60.00054 * 11 2 1 14 14 C 1.45197 * 117.00288 * 179.97438 * 13 11 2 15 15 C 1.52998 * 109.47670 * 179.97438 * 14 13 11 16 16 C 1.50692 * 109.47418 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00283 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00086 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99960 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00112 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47174 * 90.00242 * 20 18 16 22 22 H 1.48504 * 109.47047 * 210.00166 * 20 18 16 23 23 H 1.48494 * 109.47385 * 330.00016 * 20 18 16 24 24 H 1.09007 * 109.46972 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46738 * 299.99568 * 1 2 3 26 26 H 1.08998 * 109.47178 * 59.99879 * 1 2 3 27 27 H 1.08997 * 109.47212 * 175.00457 * 4 2 1 28 28 H 1.08995 * 109.47163 * 54.99867 * 4 2 1 29 29 H 1.07997 * 119.99846 * 359.97438 * 6 5 4 30 30 H 1.07999 * 119.99751 * 179.97438 * 7 6 5 31 31 H 1.08002 * 119.99744 * 179.97438 * 8 7 6 32 32 H 1.07998 * 120.00395 * 179.72811 * 9 8 7 33 33 H 1.07999 * 120.00025 * 0.02562 * 10 5 4 34 34 H 1.09000 * 109.47241 * 300.00465 * 14 13 11 35 35 H 1.09006 * 109.46571 * 60.00199 * 14 13 11 36 36 H 1.09000 * 109.47493 * 300.00709 * 15 14 13 37 37 H 1.09002 * 109.46483 * 59.99897 * 15 14 13 38 38 H 0.96999 * 119.99899 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 0.0571 2.4765 6 6 0.4357 -0.2050 3.0998 7 6 0.0703 0.5086 4.2259 8 6 0.9108 1.4839 4.7291 9 6 2.1143 1.7494 4.1030 10 6 2.4817 1.0328 2.9794 11 6 2.0323 -0.7104 -1.2305 12 8 2.7269 -1.6928 -1.1197 13 8 1.7080 -0.2519 -2.4496 14 6 2.2275 -0.9857 -3.5897 15 6 1.7554 -0.3193 -4.8835 16 6 2.2941 -1.0813 -6.0666 17 1 2.9112 -1.9539 -5.9115 18 6 1.9992 -0.6644 -7.3474 19 7 1.2482 0.3985 -7.5364 20 14 2.6665 -1.6094 -8.8141 21 1 1.6997 -2.6677 -9.2025 22 1 2.8655 -0.6784 -9.9538 23 1 3.9644 -2.2333 -8.4521 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 3.1264 -0.7994 1.2055 28 1 1.6055 -1.7198 1.2951 29 1 -0.2208 -0.9672 2.7068 30 1 -0.8719 0.3042 4.7125 31 1 0.6250 2.0417 5.6087 32 1 2.7690 2.5144 4.4935 33 1 3.4238 1.2375 2.4926 34 1 3.3170 -0.9846 -3.5566 35 1 1.8640 -2.0128 -3.5569 36 1 0.6659 -0.3206 -4.9163 37 1 2.1185 0.7080 -4.9164 38 1 1.0411 0.6920 -8.4374 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171846355.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:15 Heat of formation + Delta-G solvation = -105.871822 kcal Electronic energy + Delta-G solvation = -18626.245163 eV Core-core repulsion = 15624.999405 eV Total energy + Delta-G solvation = -3001.245758 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.66514 -40.17545 -37.88119 -36.09083 -35.45386 -32.49866 -31.82353 -31.60950 -27.72935 -27.28922 -25.15775 -23.37684 -23.00310 -22.22786 -20.95452 -19.00225 -18.24895 -17.69931 -17.43703 -17.30678 -16.51135 -16.23103 -15.86463 -15.36161 -14.93698 -14.57826 -14.39341 -14.19601 -14.01641 -13.67594 -13.33523 -13.17134 -13.11244 -12.96314 -12.61138 -12.58569 -12.27319 -12.18020 -11.88281 -11.81279 -11.75258 -11.51203 -11.48074 -11.21961 -10.62650 -9.75549 -9.58300 -8.28396 -6.41849 0.45334 0.55345 1.15913 1.40130 1.42151 1.53202 1.76389 2.39221 2.92049 3.05939 3.53405 3.79569 3.85179 4.07019 4.11556 4.20219 4.21974 4.22690 4.33600 4.36532 4.54666 4.67628 4.69389 4.77777 4.84204 4.89074 5.05766 5.17695 5.21756 5.24452 5.28396 5.44774 5.54838 5.62942 5.68415 5.73343 5.76046 6.05060 6.17023 6.69563 6.74186 7.28067 8.84310 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.054201 B = 0.002971 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.468058 B = 9422.698954 C = 9535.402590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.069 4.069 3 H 0.121 0.879 4 C -0.059 4.059 5 C -0.089 4.089 6 C -0.122 4.122 7 C -0.125 4.125 8 C -0.129 4.129 9 C -0.126 4.126 10 C -0.129 4.129 11 C 0.456 3.544 12 O -0.543 6.543 13 O -0.364 6.364 14 C 0.089 3.911 15 C 0.031 3.969 16 C -0.551 4.551 17 H 0.064 0.936 18 C 0.006 3.994 19 N -0.927 5.927 20 Si 0.974 3.026 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.264 1.264 24 H 0.062 0.938 25 H 0.093 0.907 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.132 0.868 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.126 0.874 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.007 0.993 37 H 0.006 0.994 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.905 2.158 24.267 24.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.088 4.088 3 H 0.139 0.861 4 C -0.097 4.097 5 C -0.089 4.089 6 C -0.140 4.140 7 C -0.143 4.143 8 C -0.147 4.147 9 C -0.144 4.144 10 C -0.147 4.147 11 C 0.301 3.699 12 O -0.433 6.433 13 O -0.280 6.280 14 C 0.016 3.984 15 C -0.006 4.006 16 C -0.589 4.589 17 H 0.082 0.918 18 C -0.193 4.193 19 N -0.566 5.566 20 Si 0.797 3.203 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.188 1.188 24 H 0.081 0.919 25 H 0.111 0.889 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.149 0.851 30 H 0.159 0.841 31 H 0.159 0.841 32 H 0.156 0.844 33 H 0.144 0.856 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.025 0.975 37 H 0.024 0.976 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.776 1.974 24.120 24.266 hybrid contribution 0.430 -0.442 -1.139 1.295 sum -1.346 1.532 22.981 23.071 Atomic orbital electron populations 1.21846 0.90734 1.03281 1.04112 1.21100 0.99422 1.00980 0.87311 0.86126 1.20397 1.01729 0.98201 0.89336 1.19749 0.95507 0.97323 0.96304 1.21292 0.96010 1.00454 0.96214 1.21446 1.00521 0.96155 0.96195 1.21489 0.94456 0.98155 1.00597 1.21419 0.97447 0.99862 0.95681 1.21289 1.00035 0.96132 0.97219 1.24537 0.76771 0.82733 0.85831 1.90604 1.37313 1.27525 1.87859 1.86522 1.69589 1.56220 1.15667 1.23152 0.97806 0.94827 0.82599 1.18970 0.96281 0.95843 0.89482 1.21375 1.32902 1.13194 0.91434 0.91763 1.25970 0.95023 0.95977 1.02310 1.70093 1.37989 1.25475 1.23036 0.85318 0.79051 0.78250 0.77656 1.19471 1.20303 1.18774 0.91917 0.88855 0.91816 0.90723 0.90365 0.85053 0.84135 0.84144 0.84400 0.85565 0.92350 0.92313 0.97500 0.97559 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.69 71.98 0.63 -2.42 16 2 C -0.07 -1.70 2.82 -11.54 -0.03 -1.73 16 3 H 0.12 2.65 8.14 -2.39 -0.02 2.64 16 4 C -0.06 -1.29 4.19 29.85 0.13 -1.17 16 5 C -0.09 -1.66 4.71 -19.86 -0.09 -1.76 16 6 C -0.12 -2.00 7.96 22.27 0.18 -1.82 16 7 C -0.13 -1.76 10.05 22.27 0.22 -1.54 16 8 C -0.13 -1.75 10.05 22.27 0.22 -1.53 16 9 C -0.13 -1.88 10.05 22.27 0.22 -1.65 16 10 C -0.13 -2.26 9.70 22.27 0.22 -2.05 16 11 C 0.46 15.92 7.26 71.24 0.52 16.44 16 12 O -0.54 -21.50 15.67 21.97 0.34 -21.15 16 13 O -0.36 -14.86 10.12 -51.39 -0.52 -15.38 16 14 C 0.09 4.11 5.40 71.98 0.39 4.50 16 15 C 0.03 1.71 5.35 29.84 0.16 1.87 16 16 C -0.55 -31.62 9.11 25.60 0.23 -31.38 16 17 H 0.06 3.53 7.74 -2.91 -0.02 3.51 16 18 C 0.01 0.36 5.46 84.65 0.46 0.82 16 19 N -0.93 -55.82 13.29 21.45 0.28 -55.53 16 20 Si 0.97 43.84 29.54 68.60 2.03 45.86 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 22 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 23 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 24 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 25 H 0.09 1.60 6.27 -2.39 -0.01 1.59 16 26 H 0.06 1.51 8.11 -2.39 -0.02 1.49 16 27 H 0.07 1.74 7.90 -2.39 -0.02 1.72 16 28 H 0.08 1.74 8.09 -2.39 -0.02 1.72 16 29 H 0.13 1.86 8.04 -2.91 -0.02 1.83 16 30 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 31 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 32 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 33 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 34 H 0.06 2.66 8.13 -2.39 -0.02 2.64 16 35 H 0.06 2.67 8.13 -2.38 -0.02 2.65 16 36 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -67.29 326.26 6.61 -60.68 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 1.02 Total: 8.95 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: 3.45 Total: -23.42 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: 0.28 Total: -55.53 kcal Atomic # 8 Polarization: -36.36 SS G_CDS: -0.18 Total: -36.53 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -67.29 6.61 -60.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171846355.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.192 kcal (2) G-P(sol) polarization free energy of solvation -67.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds