Wall clock time and date at job start Mon Mar 30 2020 06:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 119.99984 * 2 1 4 4 H 1.48502 * 109.47026 * 269.99846 * 3 2 1 5 5 H 1.48494 * 109.47386 * 29.99962 * 3 2 1 6 6 H 1.48504 * 109.46972 * 150.00274 * 3 2 1 7 7 C 1.37880 * 119.99680 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99443 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99996 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46615 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46719 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.47073 * 180.02562 * 11 10 9 13 13 C 1.34779 * 120.00075 * 179.97438 * 12 11 10 14 14 O 1.21700 * 119.99984 * 5.12345 * 13 12 11 15 15 C 1.46668 * 120.00174 * 185.11851 * 13 12 11 16 16 C 1.37878 * 126.23305 * 5.06192 * 15 13 12 17 17 C 1.39834 * 107.08400 * 180.23716 * 16 15 13 18 18 C 1.35454 * 107.86764 * 359.76260 * 17 16 15 19 19 N 1.35529 * 108.86832 * 359.97438 * 18 17 16 20 20 C 1.46507 * 125.67551 * 179.97438 * 19 18 17 21 21 C 1.52997 * 117.49831 * 294.52885 * 20 19 18 22 22 C 1.53001 * 117.49766 * 3.15463 * 20 19 18 23 23 H 0.97001 * 119.99793 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.46419 * 60.00500 * 9 7 2 25 25 H 1.08999 * 109.47025 * 300.00633 * 9 7 2 26 26 H 1.08996 * 109.46921 * 60.00689 * 10 9 7 27 27 H 1.09000 * 109.47502 * 300.00367 * 10 9 7 28 28 H 1.08992 * 109.47314 * 59.99996 * 11 10 9 29 29 H 1.09000 * 109.47138 * 300.00229 * 11 10 9 30 30 H 0.96994 * 120.00179 * 0.02562 * 12 11 10 31 31 H 1.07999 * 126.45849 * 0.02562 * 16 15 13 32 32 H 1.08003 * 126.06954 * 179.78889 * 17 16 15 33 33 H 1.07997 * 125.56613 * 180.02562 * 18 17 16 34 34 H 1.09002 * 115.56079 * 148.84220 * 20 19 18 35 35 H 1.08998 * 117.49908 * 0.02562 * 21 20 19 36 36 H 1.09002 * 117.50169 * 214.97631 * 21 20 19 37 37 H 1.08999 * 117.49443 * 145.01985 * 22 20 19 38 38 H 1.08996 * 117.51560 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 7 2.4321 -6.1006 -0.0006 13 6 1.9828 -7.3713 -0.0005 14 8 0.7903 -7.5951 -0.0950 15 6 2.9310 -8.4845 0.1135 16 6 4.2896 -8.3794 0.3241 17 6 4.8014 -9.6802 0.3605 18 6 3.7689 -10.5383 0.1809 19 7 2.6263 -9.8244 0.0334 20 6 1.2902 -10.3854 -0.1826 21 6 1.0432 -11.1379 -1.4916 22 6 1.1541 -11.9093 -0.1749 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5566 -0.8903 25 1 0.6245 -2.5570 0.8896 26 1 2.8717 -3.6044 0.8895 27 1 2.8719 -3.6044 -0.8905 28 1 0.8538 -5.0446 -0.8913 29 1 0.8531 -5.0450 0.8886 30 1 3.3857 -5.9235 0.0005 31 1 4.8528 -7.4648 0.4361 32 1 5.8363 -9.9525 0.5064 33 1 3.8437 -11.6155 0.1595 34 1 0.4642 -9.8042 0.2275 35 1 1.8748 -11.2160 -2.1919 36 1 0.0546 -11.0519 -1.9427 37 1 0.2386 -12.3306 0.2402 38 1 2.0585 -12.4948 -0.0095 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181547899.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:49 Heat of formation + Delta-G solvation = 23.984193 kcal Electronic energy + Delta-G solvation = -18655.713339 eV Core-core repulsion = 15692.391311 eV Total energy + Delta-G solvation = -2963.322028 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.58274 -38.94791 -37.13835 -35.39082 -33.33767 -31.42973 -30.79307 -29.37469 -26.60339 -23.77251 -23.10323 -22.89285 -21.88874 -20.63813 -20.30547 -19.13112 -18.02909 -16.40327 -15.99195 -15.77946 -15.34235 -15.32503 -14.52966 -14.45162 -14.05844 -13.73018 -13.47083 -13.03141 -12.61719 -12.47388 -12.26932 -11.92953 -11.82373 -11.71764 -11.10964 -10.98623 -10.89852 -10.72377 -10.59110 -9.94305 -9.86018 -9.40332 -9.11770 -8.85159 -8.77937 -8.36612 -8.29556 -6.01318 -4.04298 1.40565 2.43553 2.60108 3.30772 3.31595 3.37840 3.40444 3.47011 3.53651 4.20248 4.44263 4.45029 4.57720 4.75588 4.85828 5.13105 5.21446 5.27554 5.34573 5.41259 5.58520 5.64083 5.71233 5.78180 5.92731 6.05688 6.16384 6.47433 6.60465 6.61529 6.85109 6.88676 7.00471 7.08033 7.64125 7.71925 7.76617 7.97524 8.35198 8.39816 9.02394 9.59889 11.10027 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.041232 B = 0.003128 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.921781 B = 8950.631894 C = 9518.650029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.119 3.881 12 N -0.713 5.713 13 C 0.582 3.418 14 O -0.553 6.553 15 C -0.039 4.039 16 C -0.144 4.144 17 C -0.205 4.205 18 C 0.006 3.994 19 N -0.382 5.382 20 C 0.058 3.942 21 C -0.176 4.176 22 C -0.178 4.178 23 H 0.261 0.739 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.401 0.599 31 H 0.146 0.854 32 H 0.142 0.858 33 H 0.164 0.836 34 H 0.155 0.845 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.998 -23.625 -0.319 24.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.003 4.003 12 N -0.363 5.363 13 C 0.369 3.631 14 O -0.433 6.433 15 C -0.152 4.152 16 C -0.170 4.170 17 C -0.229 4.229 18 C -0.129 4.129 19 N -0.054 5.054 20 C -0.045 4.045 21 C -0.214 4.214 22 C -0.215 4.215 23 H 0.071 0.929 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.235 0.765 31 H 0.164 0.836 32 H 0.160 0.840 33 H 0.182 0.818 34 H 0.172 0.828 35 H 0.119 0.881 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.609 -23.749 -0.417 24.406 hybrid contribution 0.968 0.985 -0.004 1.381 sum 6.577 -22.765 -0.421 23.699 Atomic orbital electron populations 1.69968 1.06068 1.26681 1.50610 1.25032 0.94861 0.99316 0.95281 0.86576 0.79810 0.83406 0.78096 1.20661 1.21222 1.19867 1.21210 0.93023 0.90927 1.50880 0.92601 1.19029 0.93843 0.90829 0.97667 1.21901 0.99813 0.93180 1.01034 1.21682 0.91746 0.84774 1.02114 1.45876 1.11097 1.05065 1.74238 1.17014 0.86910 0.82370 0.76815 1.90765 1.16514 1.84812 1.51221 1.20199 0.94600 0.83787 1.16642 1.21393 0.91789 0.98464 1.05381 1.20790 0.98734 0.92432 1.10965 1.21876 0.84712 0.97916 1.08359 1.43311 1.06120 1.04754 1.51197 1.22323 0.84793 0.93823 1.03529 1.23442 1.04402 1.02369 0.91190 1.23411 1.04480 0.92343 1.01297 0.92936 0.96252 0.96256 0.92589 0.92608 0.91549 0.91664 0.76465 0.83644 0.83984 0.81829 0.82782 0.88099 0.87142 0.87018 0.87957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.89 13.29 55.43 0.74 -26.16 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 11 C 0.12 2.13 5.68 -4.04 -0.02 2.11 16 12 N -0.71 -10.86 5.53 -61.62 -0.34 -11.20 16 13 C 0.58 9.47 7.77 -12.86 -0.10 9.37 16 14 O -0.55 -10.53 14.84 5.19 0.08 -10.45 16 15 C -0.04 -0.54 6.89 -81.98 -0.56 -1.10 16 16 C -0.14 -1.68 10.35 -39.12 -0.40 -2.08 16 17 C -0.21 -2.08 10.81 -39.98 -0.43 -2.52 16 18 C 0.01 0.06 10.76 -16.91 -0.18 -0.12 16 19 N -0.38 -4.66 3.09 -105.81 -0.33 -4.99 16 20 C 0.06 0.64 6.12 -67.93 -0.42 0.22 16 21 C -0.18 -1.52 10.44 -26.73 -0.28 -1.80 16 22 C -0.18 -1.28 9.96 -26.73 -0.27 -1.55 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.40 5.05 7.42 -40.82 -0.30 4.75 16 31 H 0.15 1.39 7.49 -52.49 -0.39 1.00 16 32 H 0.14 1.10 8.06 -52.48 -0.42 0.67 16 33 H 0.16 1.10 6.87 -52.49 -0.36 0.74 16 34 H 0.15 1.98 6.68 -51.93 -0.35 1.63 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.10 0.60 6.71 -51.93 -0.35 0.26 16 LS Contribution 323.75 15.07 4.88 4.88 Total: -1.00 -32.82 323.75 -8.88 -41.69 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.52 Total: 2.64 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -3.36 Total: -12.93 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: 0.07 Total: -42.34 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.08 Total: -10.45 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.82 -8.88 -41.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181547899.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.679 kcal (2) G-P(sol) polarization free energy of solvation -32.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds