Wall clock time and date at job start Mon Mar 30 2020 06:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 119.99984 * 2 1 4 4 H 1.48502 * 109.47026 * 269.99846 * 3 2 1 5 5 H 1.48494 * 109.47386 * 29.99962 * 3 2 1 6 6 H 1.48504 * 109.46972 * 150.00274 * 3 2 1 7 7 C 1.37880 * 119.99680 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99443 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99996 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46615 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46719 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.47073 * 180.02562 * 11 10 9 13 13 C 1.34779 * 120.00075 * 179.97438 * 12 11 10 14 14 O 1.21700 * 119.99984 * 5.12345 * 13 12 11 15 15 C 1.46668 * 120.00174 * 185.11851 * 13 12 11 16 16 C 1.37878 * 126.23305 * 5.06192 * 15 13 12 17 17 C 1.39834 * 107.08400 * 180.23716 * 16 15 13 18 18 C 1.35454 * 107.86764 * 359.76260 * 17 16 15 19 19 N 1.35529 * 108.86832 * 359.97438 * 18 17 16 20 20 C 1.46507 * 125.67551 * 179.97438 * 19 18 17 21 21 C 1.52997 * 117.49831 * 294.52885 * 20 19 18 22 22 C 1.53001 * 117.49766 * 3.15463 * 20 19 18 23 23 H 0.97001 * 119.99793 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.46419 * 60.00500 * 9 7 2 25 25 H 1.08999 * 109.47025 * 300.00633 * 9 7 2 26 26 H 1.08996 * 109.46921 * 60.00689 * 10 9 7 27 27 H 1.09000 * 109.47502 * 300.00367 * 10 9 7 28 28 H 1.08992 * 109.47314 * 59.99996 * 11 10 9 29 29 H 1.09000 * 109.47138 * 300.00229 * 11 10 9 30 30 H 0.96994 * 120.00179 * 0.02562 * 12 11 10 31 31 H 1.07999 * 126.45849 * 0.02562 * 16 15 13 32 32 H 1.08003 * 126.06954 * 179.78889 * 17 16 15 33 33 H 1.07997 * 125.56613 * 180.02562 * 18 17 16 34 34 H 1.09002 * 115.56079 * 148.84220 * 20 19 18 35 35 H 1.08998 * 117.49908 * 0.02562 * 21 20 19 36 36 H 1.09002 * 117.50169 * 214.97631 * 21 20 19 37 37 H 1.08999 * 117.49443 * 145.01985 * 22 20 19 38 38 H 1.08996 * 117.51560 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 7 2.4321 -6.1006 -0.0006 13 6 1.9828 -7.3713 -0.0005 14 8 0.7903 -7.5951 -0.0950 15 6 2.9310 -8.4845 0.1135 16 6 4.2896 -8.3794 0.3241 17 6 4.8014 -9.6802 0.3605 18 6 3.7689 -10.5383 0.1809 19 7 2.6263 -9.8244 0.0334 20 6 1.2902 -10.3854 -0.1826 21 6 1.0432 -11.1379 -1.4916 22 6 1.1541 -11.9093 -0.1749 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5566 -0.8903 25 1 0.6245 -2.5570 0.8896 26 1 2.8717 -3.6044 0.8895 27 1 2.8719 -3.6044 -0.8905 28 1 0.8538 -5.0446 -0.8913 29 1 0.8531 -5.0450 0.8886 30 1 3.3857 -5.9235 0.0005 31 1 4.8528 -7.4648 0.4361 32 1 5.8363 -9.9525 0.5064 33 1 3.8437 -11.6155 0.1595 34 1 0.4642 -9.8042 0.2275 35 1 1.8748 -11.2160 -2.1919 36 1 0.0546 -11.0519 -1.9427 37 1 0.2386 -12.3306 0.2402 38 1 2.0585 -12.4948 -0.0095 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181547899.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:49 Heat of formation + Delta-G solvation = 3.784786 kcal Electronic energy + Delta-G solvation = -18656.589251 eV Core-core repulsion = 15692.391311 eV Total energy + Delta-G solvation = -2964.197940 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.45154 -40.20549 -37.85329 -36.96927 -35.22336 -33.18031 -31.62190 -30.51766 -28.34424 -25.32376 -24.10368 -23.51212 -23.09112 -22.34562 -21.21019 -20.22491 -18.96259 -18.48780 -17.13566 -16.85226 -16.65455 -16.39068 -16.37983 -15.68337 -15.01168 -14.89620 -14.62841 -14.26822 -13.93450 -13.71747 -13.51374 -13.38656 -13.21490 -12.75264 -12.56153 -12.50371 -12.38460 -11.82153 -11.74129 -11.68888 -11.56201 -11.25016 -10.97694 -10.55442 -10.21295 -9.58683 -9.19515 -8.19589 -6.31077 0.42766 1.41990 1.43481 1.54352 1.57623 1.78071 2.29448 2.33808 2.43459 2.72000 3.14258 3.48853 3.76750 3.80224 3.91447 4.08179 4.15065 4.18969 4.38332 4.48713 4.52898 4.60482 4.77899 4.86530 4.92208 4.94512 5.03659 5.15408 5.17292 5.26407 5.37928 5.51621 5.69878 5.80990 5.83773 6.01116 6.22092 6.31671 6.53320 6.86274 7.14903 7.38524 8.92659 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.041232 B = 0.003128 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.921781 B = 8950.631894 C = 9518.650029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.102 4.102 11 C 0.134 3.866 12 N -0.704 5.704 13 C 0.578 3.422 14 O -0.593 6.593 15 C -0.085 4.085 16 C -0.135 4.135 17 C -0.214 4.214 18 C 0.019 3.981 19 N -0.387 5.387 20 C 0.020 3.980 21 C -0.175 4.175 22 C -0.144 4.144 23 H 0.263 0.737 24 H -0.008 1.008 25 H -0.007 1.007 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.415 0.585 31 H 0.162 0.838 32 H 0.171 0.829 33 H 0.201 0.799 34 H 0.123 0.877 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.127 0.873 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.815 -25.197 -0.227 27.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.014 4.014 10 C -0.139 4.139 11 C 0.010 3.990 12 N -0.355 5.355 13 C 0.368 3.632 14 O -0.476 6.476 15 C -0.198 4.198 16 C -0.162 4.162 17 C -0.237 4.237 18 C -0.116 4.116 19 N -0.059 5.059 20 C -0.083 4.083 21 C -0.213 4.213 22 C -0.181 4.181 23 H 0.072 0.928 24 H 0.010 0.990 25 H 0.011 0.989 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.253 0.747 31 H 0.180 0.820 32 H 0.188 0.812 33 H 0.218 0.782 34 H 0.141 0.859 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.145 0.855 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.463 -25.328 -0.325 26.707 hybrid contribution 0.083 1.374 -0.031 1.377 sum 8.546 -23.954 -0.356 25.435 Atomic orbital electron populations 1.70115 1.07966 1.27806 1.51712 1.26034 0.95756 1.03592 0.94760 0.85401 0.78700 0.78207 0.78461 1.19823 1.21027 1.18364 1.21686 0.93792 0.91972 1.50456 0.91471 1.18938 0.94410 0.92905 0.95103 1.21606 0.98494 0.91566 1.02284 1.21267 0.91772 0.85148 1.00803 1.45612 1.11343 1.04267 1.74250 1.17449 0.86944 0.83044 0.75807 1.90738 1.18321 1.85378 1.53120 1.19985 0.94959 0.84043 1.20765 1.21749 0.90867 1.00122 1.03468 1.21191 1.00182 0.91585 1.10749 1.22582 0.83721 0.99595 1.05718 1.43483 1.07027 1.04370 1.51054 1.22293 0.83977 0.96001 1.06002 1.23488 1.04586 1.01992 0.91208 1.23562 1.06094 0.89497 0.98938 0.92806 0.98953 0.98877 0.91159 0.91302 0.93115 0.92997 0.74735 0.82015 0.81203 0.78246 0.85944 0.87838 0.87033 0.85512 0.85739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.60 13.29 21.45 0.28 -57.31 16 2 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 3 Si 0.97 44.07 29.54 68.60 2.03 46.09 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.54 -30.46 9.11 25.60 0.23 -30.22 16 8 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 9 C 0.02 1.27 4.97 29.85 0.15 1.42 16 10 C -0.10 -4.01 5.27 30.59 0.16 -3.85 16 11 C 0.13 4.96 5.68 86.38 0.49 5.45 16 12 N -0.70 -21.70 5.53 -467.08 -2.58 -24.28 16 13 C 0.58 19.44 7.77 86.44 0.67 20.11 16 14 O -0.59 -24.00 14.84 -4.35 -0.06 -24.07 16 15 C -0.09 -2.34 6.89 40.35 0.28 -2.06 16 16 C -0.14 -2.90 10.35 22.57 0.23 -2.66 16 17 C -0.21 -3.65 10.81 22.01 0.24 -3.41 16 18 C 0.02 0.32 10.76 83.48 0.90 1.22 16 19 N -0.39 -9.06 3.09 -488.67 -1.51 -10.57 16 20 C 0.02 0.44 6.12 44.99 0.28 0.71 16 21 C -0.18 -2.83 10.44 30.60 0.32 -2.51 16 22 C -0.14 -1.72 9.96 30.60 0.30 -1.41 16 23 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 24 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 25 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 26 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 27 H 0.07 2.54 8.14 -2.39 -0.02 2.53 16 28 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.42 10.12 7.42 -92.71 -0.69 9.43 16 31 H 0.16 2.73 7.49 -2.91 -0.02 2.70 16 32 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 33 H 0.20 1.72 6.87 -2.91 -0.02 1.70 16 34 H 0.12 3.41 6.68 -2.39 -0.02 3.39 16 35 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.12 0.93 6.71 -2.39 -0.02 0.92 16 Total: -1.00 -73.54 323.75 3.24 -70.31 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.37 Total: 16.82 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: 4.71 Total: -16.98 kcal Atomic # 7 Polarization: -88.36 SS G_CDS: -3.81 Total: -92.16 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.06 Total: -24.07 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -73.54 3.24 -70.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181547899.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.090 kcal (2) G-P(sol) polarization free energy of solvation -73.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds