Wall clock time and date at job start Mon Mar 30 2020 06:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.34512 * 125.78574 * 2 1 4 4 C 1.41392 * 106.83974 * 180.02562 * 3 2 1 5 5 C 1.34508 * 106.83816 * 359.97438 * 4 3 2 6 6 C 1.50698 * 125.78984 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.46964 * 340.00072 * 6 5 4 8 8 C 1.52998 * 109.47306 * 100.00327 * 6 5 4 9 9 N 1.46903 * 109.47398 * 220.00531 * 6 5 4 10 10 C 1.46900 * 111.00425 * 155.00236 * 9 6 5 11 11 C 1.52994 * 109.47557 * 180.02562 * 10 9 6 12 12 H 1.09008 * 109.46970 * 304.99717 * 11 10 9 13 13 C 1.47205 * 109.47251 * 64.99350 * 11 10 9 14 14 N 6.35229 * 115.01568 * 230.35165 * 2 1 3 15 15 C 1.52997 * 109.47404 * 184.99766 * 11 10 9 16 16 C 1.50701 * 109.47212 * 174.99684 * 15 11 10 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 11 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 11 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47432 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46890 * 120.00210 * 20 18 16 23 23 H 1.48501 * 109.47062 * 240.00257 * 20 18 16 24 24 O 1.34302 * 125.79262 * 180.34629 * 2 1 3 25 25 H 1.08995 * 109.46959 * 90.00378 * 1 2 3 26 26 H 1.09004 * 109.46625 * 210.00276 * 1 2 3 27 27 H 1.08994 * 109.46786 * 330.00186 * 1 2 3 28 28 H 1.07999 * 126.58344 * 0.02562 * 3 2 1 29 29 H 1.07995 * 126.57857 * 180.02562 * 4 3 2 30 30 H 1.08992 * 109.47414 * 179.97438 * 8 6 5 31 31 H 1.08998 * 109.46949 * 300.00470 * 8 6 5 32 32 H 1.09000 * 109.46794 * 59.99903 * 8 6 5 33 33 H 1.00900 * 110.99940 * 31.04161 * 9 6 5 34 34 H 1.09001 * 109.46898 * 59.99249 * 10 9 6 35 35 H 1.09009 * 109.46674 * 299.99940 * 10 9 6 36 36 H 1.09002 * 109.47153 * 54.99686 * 15 11 10 37 37 H 1.09001 * 109.46832 * 294.99876 * 15 11 10 38 38 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6310 0.6321 -0.0006 5 6 3.5815 -0.7121 -0.0004 6 6 4.7707 -1.6377 -0.0003 7 1 5.6505 -1.0989 -0.3519 8 6 5.0193 -2.1485 1.4203 9 7 4.5054 -2.7759 -0.8904 10 6 5.7588 -3.3592 -1.3870 11 6 5.4426 -4.5385 -2.3090 12 1 4.8099 -5.2525 -1.7815 13 6 4.7388 -4.0504 -3.5062 14 7 4.1933 -3.6730 -4.4323 15 6 6.7455 -5.2230 -2.7268 16 6 6.4289 -6.4559 -3.5335 17 1 5.4012 -6.7242 -3.7291 18 6 7.4514 -7.2409 -4.0229 19 7 8.7029 -6.9139 -3.7852 20 14 7.0590 -8.7687 -5.0235 21 1 5.5864 -8.9140 -5.1484 22 1 7.6600 -8.6426 -6.3756 23 1 7.6188 -9.9637 -4.3424 24 8 2.2926 -1.0894 -0.0066 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.9665 2.1204 0.0004 29 1 4.5213 1.2434 -0.0004 30 1 5.8791 -2.8183 1.4203 31 1 5.2161 -1.3040 2.0808 32 1 4.1394 -2.6873 1.7719 33 1 3.9049 -2.5049 -1.6546 34 1 6.3569 -3.7063 -0.5445 35 1 6.3162 -2.6042 -1.9416 36 1 7.3089 -5.5055 -1.8375 37 1 7.3393 -4.5364 -3.3302 38 1 9.4222 -7.4664 -4.1291 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182565923.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:53 Heat of formation + Delta-G solvation = 3.184042 kcal Electronic energy + Delta-G solvation = -18836.249983 eV Core-core repulsion = 15872.025993 eV Total energy + Delta-G solvation = -2964.223990 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.55054 -39.09472 -37.18471 -35.59404 -34.15980 -34.02639 -32.45549 -30.76936 -28.08757 -27.28715 -24.72907 -23.59706 -22.67580 -22.61859 -20.87713 -18.61777 -18.28483 -17.92614 -17.19055 -16.64159 -16.31177 -16.00462 -15.29054 -14.85698 -14.71374 -14.41604 -14.14417 -13.97294 -13.91371 -13.71900 -13.69923 -13.52090 -13.15013 -13.06870 -12.86172 -12.81613 -12.57141 -12.51807 -12.28177 -12.12909 -11.95328 -11.40445 -11.15333 -10.81650 -10.55282 -9.51821 -9.22737 -8.19685 -6.27441 0.74304 1.38943 1.42062 1.52456 1.64981 1.89096 1.91648 1.98806 2.41468 3.03035 3.15230 3.22575 3.60957 4.00281 4.08606 4.11962 4.27280 4.33551 4.44275 4.57319 4.66890 4.69588 4.80513 4.83466 4.85401 4.92745 4.96852 5.03910 5.09653 5.26589 5.39860 5.47780 5.61293 5.63581 5.79366 5.91056 6.12409 6.21322 6.32841 6.72617 6.87072 7.41043 8.91347 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.033291 B = 0.003703 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.870256 B = 7560.216830 C = 7999.210033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.031 4.031 3 C -0.225 4.225 4 C -0.212 4.212 5 C -0.032 4.032 6 C 0.164 3.836 7 H 0.087 0.913 8 C -0.134 4.134 9 N -0.687 5.687 10 C 0.076 3.924 11 C 0.019 3.981 12 H 0.123 0.877 13 C 0.250 3.750 14 N -0.507 5.507 15 C 0.039 3.961 16 C -0.539 4.539 17 H 0.052 0.948 18 C 0.012 3.988 19 N -0.922 5.922 20 Si 0.948 3.052 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.272 1.272 24 O -0.184 6.184 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.110 0.890 28 H 0.168 0.832 29 H 0.163 0.837 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.335 0.665 34 H 0.114 0.886 35 H 0.039 0.961 36 H 0.040 0.960 37 H 0.002 0.998 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.469 14.740 12.955 22.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.081 4.081 3 C -0.243 4.243 4 C -0.231 4.231 5 C -0.082 4.082 6 C 0.055 3.945 7 H 0.104 0.896 8 C -0.192 4.192 9 N -0.319 5.319 10 C -0.053 4.053 11 C -0.003 4.003 12 H 0.140 0.860 13 C -0.066 4.066 14 N -0.185 5.185 15 C 0.000 4.000 16 C -0.577 4.577 17 H 0.070 0.930 18 C -0.187 4.187 19 N -0.562 5.562 20 Si 0.774 3.226 21 H -0.195 1.195 22 H -0.211 1.211 23 H -0.197 1.197 24 O -0.081 6.081 25 H 0.105 0.895 26 H 0.097 0.903 27 H 0.129 0.871 28 H 0.186 0.814 29 H 0.181 0.819 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.152 0.848 34 H 0.133 0.867 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.021 0.979 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.288 14.503 12.054 21.979 hybrid contribution 0.648 -0.233 -1.241 1.419 sum -10.640 14.270 10.813 20.827 Atomic orbital electron populations 1.20463 0.82949 1.05203 1.04300 1.23256 0.95623 0.84072 1.05170 1.21882 0.92398 1.00356 1.09705 1.21894 0.99341 0.93606 1.08308 1.22717 0.83265 0.94807 1.07402 1.20244 0.90161 0.87861 0.96187 0.89580 1.21803 1.02704 1.01709 0.92950 1.60666 1.16137 1.32028 1.23036 1.22062 0.90956 0.94313 0.97993 1.19254 0.97215 0.97676 0.86118 0.85981 1.29870 0.91380 0.91027 0.94341 1.81161 1.12813 1.12262 1.12225 1.18991 0.90403 0.93708 0.96853 1.21582 0.92684 1.09885 1.33582 0.92963 1.25690 0.95020 1.00710 0.97275 1.70029 0.99314 1.40053 1.46804 0.85654 0.78361 0.80133 0.78480 1.19534 1.21121 1.19726 1.84007 1.16692 1.35906 1.71451 0.89520 0.90296 0.87109 0.81440 0.81902 0.90476 0.90876 0.92741 0.84800 0.86748 0.94273 0.94145 0.97937 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.00 10.42 71.24 0.74 -0.26 16 2 C -0.03 -0.68 7.32 24.84 0.18 -0.50 16 3 C -0.22 -4.59 10.81 22.19 0.24 -4.35 16 4 C -0.21 -4.64 10.80 22.19 0.24 -4.40 16 5 C -0.03 -0.78 5.81 24.83 0.14 -0.64 16 6 C 0.16 3.71 3.07 44.17 0.14 3.85 16 7 H 0.09 1.73 7.79 -2.39 -0.02 1.71 16 8 C -0.13 -2.60 9.40 71.98 0.68 -1.92 16 9 N -0.69 -18.45 6.29 -495.45 -3.12 -21.56 16 10 C 0.08 2.14 4.92 86.30 0.42 2.57 16 11 C 0.02 0.69 2.42 -12.60 -0.03 0.66 16 12 H 0.12 4.21 8.14 -2.38 -0.02 4.19 16 13 C 0.25 10.22 12.99 89.41 1.16 11.38 16 14 N -0.51 -22.58 18.56 20.05 0.37 -22.21 16 15 C 0.04 1.80 4.42 29.85 0.13 1.93 16 16 C -0.54 -28.65 8.60 25.60 0.22 -28.43 16 17 H 0.05 2.78 7.59 -2.91 -0.02 2.75 16 18 C 0.01 0.66 5.46 84.66 0.46 1.12 16 19 N -0.92 -52.71 13.29 21.45 0.28 -52.43 16 20 Si 0.95 43.61 29.54 68.60 2.03 45.64 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 24 O -0.18 -4.99 10.64 -2.48 -0.03 -5.02 16 25 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 27 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.17 2.49 8.06 -2.91 -0.02 2.46 16 29 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 30 H 0.08 1.38 7.45 -2.39 -0.02 1.36 16 31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.33 10.08 7.42 -89.69 -0.67 9.42 16 34 H 0.11 2.80 7.43 -2.39 -0.02 2.78 16 35 H 0.04 1.09 8.05 -2.38 -0.02 1.07 16 36 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 38 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -65.14 331.38 4.66 -60.48 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.39 Total: 14.10 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: 4.73 Total: -19.00 kcal Atomic # 7 Polarization: -93.74 SS G_CDS: -2.46 Total: -96.20 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: -0.03 Total: -5.02 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -65.14 4.66 -60.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182565923.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.665 kcal (2) G-P(sol) polarization free energy of solvation -65.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds