Wall clock time and date at job start Mon Mar 30 2020 06:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34522 * 125.79126 * 2 1 4 4 C 1.41384 * 106.84264 * 179.74978 * 3 2 1 5 5 C 1.34517 * 106.83695 * 0.37255 * 4 3 2 6 6 C 1.50696 * 125.78549 * 179.88650 * 5 4 3 7 7 H 1.08998 * 109.47461 * 19.72058 * 6 5 4 8 8 C 1.53005 * 109.47334 * 259.71829 * 6 5 4 9 9 N 1.46904 * 109.47120 * 139.71884 * 6 5 4 10 10 C 1.46896 * 111.00016 * 204.99932 * 9 6 5 11 11 C 1.53002 * 109.47181 * 179.97438 * 10 9 6 12 12 H 1.09002 * 109.47070 * 305.00230 * 11 10 9 13 13 C 1.47201 * 109.46938 * 65.00082 * 11 10 9 14 14 N 7.07510 * 113.22170 * 171.73746 * 2 1 3 15 15 C 1.53000 * 109.47233 * 184.99855 * 11 10 9 16 16 C 1.50698 * 109.46984 * 175.00062 * 15 11 10 17 17 H 1.08008 * 120.00253 * 0.02562 * 16 15 11 18 18 C 1.37881 * 120.00032 * 180.02562 * 16 15 11 19 19 N 1.31516 * 119.99811 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99974 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47344 * 89.99767 * 20 18 16 22 22 H 1.48499 * 109.46707 * 209.99826 * 20 18 16 23 23 H 1.48500 * 109.47223 * 329.99502 * 20 18 16 24 24 O 1.34299 * 125.79257 * 179.97438 * 2 1 3 25 25 H 1.08996 * 109.47561 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47303 * 300.00010 * 1 2 3 27 27 H 1.09000 * 109.47268 * 59.99684 * 1 2 3 28 28 H 1.08001 * 126.57824 * 0.02562 * 3 2 1 29 29 H 1.07992 * 126.57787 * 180.23597 * 4 3 2 30 30 H 1.09004 * 109.47264 * 180.02562 * 8 6 5 31 31 H 1.09001 * 109.46952 * 299.99971 * 8 6 5 32 32 H 1.08998 * 109.47125 * 60.00398 * 8 6 5 33 33 H 1.00903 * 111.00052 * 81.04479 * 9 6 5 34 34 H 1.09008 * 109.47165 * 59.99956 * 10 9 6 35 35 H 1.08997 * 109.47437 * 299.99850 * 10 9 6 36 36 H 1.08990 * 109.47170 * 295.00238 * 15 11 10 37 37 H 1.09001 * 109.46952 * 55.00315 * 15 11 10 38 38 H 0.96997 * 119.99784 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6309 0.6321 0.0059 5 6 3.5813 -0.7122 0.0008 6 6 4.7705 -1.6378 0.0018 7 1 5.6502 -1.0989 0.3537 8 6 5.0201 -2.1491 -1.4186 9 7 4.5046 -2.7756 0.8921 10 6 5.7577 -3.3587 1.3897 11 6 5.4408 -4.5378 2.3119 12 1 4.7695 -4.2085 3.1050 13 6 4.7946 -5.6083 1.5351 14 7 4.2966 -6.4344 0.9344 15 6 6.7377 -5.0663 2.9280 16 6 6.4148 -6.1458 3.9288 17 1 5.3874 -6.4271 4.1072 18 6 7.4311 -6.7745 4.6166 19 7 8.6822 -6.4323 4.3990 20 14 7.0309 -8.1130 5.8566 21 1 7.0135 -9.4314 5.1735 22 1 8.0625 -8.1226 6.9248 23 1 5.6987 -7.8492 6.4573 24 8 2.2924 -1.0894 0.0005 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.9665 2.1205 0.0004 29 1 4.5211 1.2433 0.0111 30 1 5.8800 -2.8190 -1.4178 31 1 4.1404 -2.6880 -1.7705 32 1 5.2174 -1.3048 -2.0792 33 1 3.9402 -3.4725 0.4296 34 1 6.3148 -2.6036 1.9445 35 1 6.3564 -3.7062 0.5478 36 1 7.3720 -5.4770 2.1426 37 1 7.2606 -4.2514 3.4286 38 1 9.3971 -6.8748 4.8826 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182565935.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:55 Heat of formation + Delta-G solvation = 21.131478 kcal Electronic energy + Delta-G solvation = -18816.118674 eV Core-core repulsion = 15852.672943 eV Total energy + Delta-G solvation = -2963.445731 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.55931 -37.86256 -35.87952 -33.85248 -33.15199 -32.51523 -31.38920 -29.47995 -26.62466 -26.16811 -23.26578 -22.17404 -21.72477 -21.64201 -19.96544 -17.09828 -16.61989 -16.42749 -16.12016 -15.33682 -14.99451 -14.48377 -14.38509 -13.51345 -13.33737 -13.21795 -13.17153 -12.87021 -12.85956 -12.78236 -12.45151 -12.10385 -12.08865 -11.77429 -11.59747 -11.52917 -11.23083 -11.03535 -10.76496 -10.53900 -10.27955 -9.85381 -9.56788 -9.24860 -8.48763 -8.45182 -8.21861 -6.10209 -4.13216 1.73195 2.59408 2.92168 3.29879 3.36416 3.40069 3.54971 3.61086 4.11129 4.41493 4.57151 4.76634 4.81660 4.95586 4.99293 5.09308 5.24247 5.27071 5.27967 5.45402 5.49780 5.53428 5.55740 5.70737 5.81763 5.90189 5.99781 6.11055 6.15715 6.32475 6.51133 6.53185 6.96257 7.24815 7.34030 7.42478 7.51652 7.84968 8.22414 8.38775 8.91259 9.52307 11.00696 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.029942 B = 0.003649 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.909799 B = 7670.460787 C = 7840.306390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.023 4.023 3 C -0.213 4.213 4 C -0.215 4.215 5 C 0.017 3.983 6 C 0.163 3.837 7 H 0.111 0.889 8 C -0.183 4.183 9 N -0.685 5.685 10 C 0.066 3.934 11 C 0.007 3.993 12 H 0.112 0.888 13 C 0.240 3.760 14 N -0.475 5.475 15 C 0.033 3.967 16 C -0.527 4.527 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.285 1.285 23 H -0.272 1.272 24 O -0.163 6.163 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.144 0.856 29 H 0.145 0.855 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.344 0.656 34 H 0.094 0.906 35 H 0.039 0.961 36 H 0.025 0.975 37 H 0.040 0.960 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.703 16.028 -9.575 21.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.073 4.073 3 C -0.232 4.232 4 C -0.234 4.234 5 C -0.034 4.034 6 C 0.053 3.947 7 H 0.128 0.872 8 C -0.242 4.242 9 N -0.316 5.316 10 C -0.063 4.063 11 C -0.015 4.015 12 H 0.129 0.871 13 C -0.076 4.076 14 N -0.152 5.152 15 C -0.006 4.006 16 C -0.565 4.565 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.197 1.197 24 O -0.059 6.059 25 H 0.093 0.907 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.161 0.839 29 H 0.163 0.837 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.163 0.837 34 H 0.112 0.888 35 H 0.057 0.943 36 H 0.043 0.957 37 H 0.059 0.941 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.475 14.823 -9.859 20.655 hybrid contribution 0.497 -0.722 0.216 0.902 sum -9.978 14.101 -9.643 19.783 Atomic orbital electron populations 1.20262 0.85500 1.03936 1.03200 1.22400 0.93973 0.84417 1.06525 1.21469 0.92751 0.99155 1.09872 1.21472 0.98120 0.93667 1.10187 1.22381 0.82820 0.93983 1.04217 1.20079 0.91439 0.91094 0.92112 0.87160 1.22543 1.02693 1.02116 0.96849 1.60616 1.18940 1.11619 1.40394 1.22163 0.90155 0.96322 0.97707 1.19333 1.00477 0.87033 0.94679 0.87062 1.29330 0.91887 0.93917 0.92496 1.81055 1.11656 1.10807 1.11726 1.19163 0.88694 0.96929 0.95791 1.21148 0.93183 1.19708 1.22426 0.92493 1.24952 0.94981 0.97010 0.97024 1.69936 0.98851 1.42139 1.42118 0.86587 0.78244 0.82214 0.81016 1.20689 1.21077 1.19702 1.83992 1.16283 1.34726 1.70874 0.90661 0.89855 0.90047 0.83864 0.83690 0.91244 0.92076 0.91504 0.83657 0.88757 0.94281 0.95710 0.94142 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.42 36.00 0.37 -0.19 16 2 C -0.02 -0.26 7.32 -35.63 -0.26 -0.53 16 3 C -0.21 -2.36 10.81 -39.70 -0.43 -2.79 16 4 C -0.21 -2.49 10.80 -39.70 -0.43 -2.92 16 5 C 0.02 0.22 6.16 -35.63 -0.22 0.00 16 6 C 0.16 1.90 3.04 -68.86 -0.21 1.69 16 7 H 0.11 1.12 7.79 -51.93 -0.40 0.72 16 8 C -0.18 -1.92 9.14 37.16 0.34 -1.58 16 9 N -0.68 -9.40 6.22 -107.95 -0.67 -10.07 16 10 C 0.07 0.95 4.92 -3.83 -0.02 0.94 16 11 C 0.01 0.12 2.42 -93.40 -0.23 -0.10 16 12 H 0.11 2.00 8.14 -51.93 -0.42 1.57 16 13 C 0.24 4.87 12.98 -20.74 -0.27 4.60 16 14 N -0.48 -10.40 18.54 42.17 0.78 -9.62 16 15 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16 16 C -0.53 -14.02 8.60 -34.44 -0.30 -14.32 16 17 H 0.06 1.52 7.59 -52.48 -0.40 1.12 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -25.46 13.29 55.43 0.74 -24.73 16 20 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 24 O -0.16 -2.26 10.64 5.73 0.06 -2.20 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 29 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.07 0.72 7.45 -51.93 -0.39 0.33 16 31 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.34 5.03 7.55 -39.29 -0.30 4.73 16 34 H 0.09 1.25 8.06 -51.92 -0.42 0.83 16 35 H 0.04 0.55 7.43 -51.93 -0.39 0.16 16 36 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 331.46 15.07 5.00 5.00 Total: -1.00 -30.79 331.46 -6.64 -37.42 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -5.65 Total: 0.80 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -1.86 Total: -12.94 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.85 Total: -44.42 kcal Atomic # 8 Polarization: -2.26 SS G_CDS: 0.06 Total: -2.20 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.79 -6.64 -37.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182565935.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.555 kcal (2) G-P(sol) polarization free energy of solvation -30.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds