Wall clock time and date at job start Mon Mar 30 2020 06:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34522 * 125.79126 * 2 1 4 4 C 1.41384 * 106.84264 * 179.74978 * 3 2 1 5 5 C 1.34517 * 106.83695 * 0.37255 * 4 3 2 6 6 C 1.50696 * 125.78549 * 179.88650 * 5 4 3 7 7 H 1.08998 * 109.47461 * 19.72058 * 6 5 4 8 8 C 1.53005 * 109.47334 * 259.71829 * 6 5 4 9 9 N 1.46904 * 109.47120 * 139.71884 * 6 5 4 10 10 C 1.46896 * 111.00016 * 204.99932 * 9 6 5 11 11 C 1.53002 * 109.47181 * 179.97438 * 10 9 6 12 12 H 1.09002 * 109.47070 * 305.00230 * 11 10 9 13 13 C 1.47201 * 109.46938 * 65.00082 * 11 10 9 14 14 N 7.07510 * 113.22170 * 171.73746 * 2 1 3 15 15 C 1.53000 * 109.47233 * 184.99855 * 11 10 9 16 16 C 1.50698 * 109.46984 * 175.00062 * 15 11 10 17 17 H 1.08008 * 120.00253 * 0.02562 * 16 15 11 18 18 C 1.37881 * 120.00032 * 180.02562 * 16 15 11 19 19 N 1.31516 * 119.99811 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99974 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47344 * 89.99767 * 20 18 16 22 22 H 1.48499 * 109.46707 * 209.99826 * 20 18 16 23 23 H 1.48500 * 109.47223 * 329.99502 * 20 18 16 24 24 O 1.34299 * 125.79257 * 179.97438 * 2 1 3 25 25 H 1.08996 * 109.47561 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47303 * 300.00010 * 1 2 3 27 27 H 1.09000 * 109.47268 * 59.99684 * 1 2 3 28 28 H 1.08001 * 126.57824 * 0.02562 * 3 2 1 29 29 H 1.07992 * 126.57787 * 180.23597 * 4 3 2 30 30 H 1.09004 * 109.47264 * 180.02562 * 8 6 5 31 31 H 1.09001 * 109.46952 * 299.99971 * 8 6 5 32 32 H 1.08998 * 109.47125 * 60.00398 * 8 6 5 33 33 H 1.00903 * 111.00052 * 81.04479 * 9 6 5 34 34 H 1.09008 * 109.47165 * 59.99956 * 10 9 6 35 35 H 1.08997 * 109.47437 * 299.99850 * 10 9 6 36 36 H 1.08990 * 109.47170 * 295.00238 * 15 11 10 37 37 H 1.09001 * 109.46952 * 55.00315 * 15 11 10 38 38 H 0.96997 * 119.99784 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6309 0.6321 0.0059 5 6 3.5813 -0.7122 0.0008 6 6 4.7705 -1.6378 0.0018 7 1 5.6502 -1.0989 0.3537 8 6 5.0201 -2.1491 -1.4186 9 7 4.5046 -2.7756 0.8921 10 6 5.7577 -3.3587 1.3897 11 6 5.4408 -4.5378 2.3119 12 1 4.7695 -4.2085 3.1050 13 6 4.7946 -5.6083 1.5351 14 7 4.2966 -6.4344 0.9344 15 6 6.7377 -5.0663 2.9280 16 6 6.4148 -6.1458 3.9288 17 1 5.3874 -6.4271 4.1072 18 6 7.4311 -6.7745 4.6166 19 7 8.6822 -6.4323 4.3990 20 14 7.0309 -8.1130 5.8566 21 1 7.0135 -9.4314 5.1735 22 1 8.0625 -8.1226 6.9248 23 1 5.6987 -7.8492 6.4573 24 8 2.2924 -1.0894 0.0005 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.9665 2.1205 0.0004 29 1 4.5211 1.2433 0.0111 30 1 5.8800 -2.8190 -1.4178 31 1 4.1404 -2.6880 -1.7705 32 1 5.2174 -1.3048 -2.0792 33 1 3.9402 -3.4725 0.4296 34 1 6.3148 -2.6036 1.9445 35 1 6.3564 -3.7062 0.5478 36 1 7.3720 -5.4770 2.1426 37 1 7.2606 -4.2514 3.4286 38 1 9.3971 -6.8748 4.8826 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182565935.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:55 Heat of formation + Delta-G solvation = 2.818126 kcal Electronic energy + Delta-G solvation = -18816.912801 eV Core-core repulsion = 15852.672943 eV Total energy + Delta-G solvation = -2964.239857 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.43188 -39.15543 -37.25820 -35.61168 -34.11211 -33.96718 -32.45227 -30.66895 -27.96499 -27.28823 -24.65701 -23.60873 -22.94958 -22.55544 -20.83854 -18.61371 -18.28831 -17.69623 -17.01703 -16.74650 -16.32471 -15.83881 -15.34412 -14.90632 -14.61859 -14.34117 -14.20589 -13.98618 -13.87755 -13.74463 -13.61655 -13.54464 -13.34878 -13.06613 -12.89045 -12.70255 -12.54069 -12.49972 -12.38879 -12.24111 -11.99293 -11.40270 -11.16292 -10.70955 -10.55194 -9.52110 -9.08127 -8.19581 -6.27404 0.86197 1.39859 1.42009 1.51305 1.75432 1.92174 1.95038 2.11952 2.41477 3.06796 3.15485 3.23738 3.73580 3.96787 4.09854 4.17494 4.26781 4.29051 4.38161 4.56984 4.62754 4.71273 4.74970 4.79204 4.91986 4.93728 4.97132 5.01084 5.12275 5.19034 5.36857 5.47615 5.62841 5.71839 5.79497 5.93069 6.19634 6.22014 6.38568 6.73791 6.87084 7.40978 8.91236 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.029942 B = 0.003649 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.909799 B = 7670.460787 C = 7840.306390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.038 4.038 3 C -0.223 4.223 4 C -0.217 4.217 5 C -0.007 4.007 6 C 0.164 3.836 7 H 0.128 0.872 8 C -0.177 4.177 9 N -0.690 5.690 10 C 0.078 3.922 11 C 0.018 3.982 12 H 0.119 0.881 13 C 0.250 3.750 14 N -0.505 5.505 15 C 0.040 3.960 16 C -0.540 4.540 17 H 0.052 0.948 18 C 0.012 3.988 19 N -0.922 5.922 20 Si 0.947 3.053 21 H -0.284 1.284 22 H -0.278 1.278 23 H -0.266 1.266 24 O -0.189 6.189 25 H 0.071 0.929 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.166 0.834 29 H 0.165 0.835 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.337 0.663 34 H 0.112 0.888 35 H 0.044 0.956 36 H 0.004 0.996 37 H 0.039 0.961 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.280 17.380 -9.533 22.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.088 4.088 3 C -0.242 4.242 4 C -0.236 4.236 5 C -0.058 4.058 6 C 0.055 3.945 7 H 0.146 0.854 8 C -0.236 4.236 9 N -0.320 5.320 10 C -0.052 4.052 11 C -0.004 4.004 12 H 0.137 0.863 13 C -0.066 4.066 14 N -0.182 5.182 15 C 0.001 3.999 16 C -0.578 4.578 17 H 0.070 0.930 18 C -0.187 4.187 19 N -0.562 5.562 20 Si 0.773 3.227 21 H -0.210 1.210 22 H -0.203 1.203 23 H -0.190 1.190 24 O -0.086 6.086 25 H 0.090 0.910 26 H 0.116 0.884 27 H 0.120 0.880 28 H 0.183 0.817 29 H 0.182 0.818 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.155 0.845 34 H 0.130 0.870 35 H 0.062 0.938 36 H 0.022 0.978 37 H 0.057 0.943 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.060 16.190 -9.819 21.929 hybrid contribution 0.636 -1.092 0.182 1.277 sum -10.425 15.098 -9.637 20.724 Atomic orbital electron populations 1.20427 0.83257 1.04265 1.04887 1.23162 0.95486 0.84156 1.05968 1.21829 0.92555 1.00179 1.09623 1.21822 0.99186 0.93490 1.09104 1.22619 0.82783 0.94693 1.05658 1.20186 0.91880 0.90240 0.92225 0.85442 1.22481 1.02072 1.02508 0.96534 1.60575 1.18289 1.11815 1.41352 1.22026 0.90704 0.95167 0.97310 1.19245 0.98103 0.87612 0.95425 0.86310 1.29702 0.91287 0.93646 0.91922 1.81053 1.12608 1.11637 1.12925 1.18981 0.90442 0.95955 0.94549 1.21561 0.92906 1.20453 1.22929 0.92980 1.25689 0.95019 0.99093 0.98867 1.70021 0.99561 1.43362 1.43240 0.85716 0.78420 0.79466 0.79126 1.20997 1.20283 1.19003 1.83975 1.17038 1.36077 1.71524 0.91009 0.88352 0.88048 0.81650 0.81782 0.91134 0.93342 0.90007 0.84472 0.86976 0.93790 0.97809 0.94282 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.00 10.42 71.23 0.74 -0.26 16 2 C -0.04 -0.83 7.32 24.83 0.18 -0.65 16 3 C -0.22 -4.52 10.81 22.19 0.24 -4.28 16 4 C -0.22 -4.63 10.80 22.19 0.24 -4.39 16 5 C -0.01 -0.17 6.16 24.83 0.15 -0.02 16 6 C 0.16 3.58 3.04 44.17 0.13 3.71 16 7 H 0.13 2.29 7.79 -2.39 -0.02 2.28 16 8 C -0.18 -3.50 9.14 71.98 0.66 -2.84 16 9 N -0.69 -18.16 6.22 -495.44 -3.08 -21.24 16 10 C 0.08 2.13 4.92 86.30 0.42 2.55 16 11 C 0.02 0.65 2.42 -12.60 -0.03 0.61 16 12 H 0.12 4.13 8.14 -2.39 -0.02 4.11 16 13 C 0.25 10.08 12.98 89.44 1.16 11.24 16 14 N -0.50 -22.05 18.54 20.01 0.37 -21.68 16 15 C 0.04 1.80 4.42 29.85 0.13 1.94 16 16 C -0.54 -28.69 8.60 25.60 0.22 -28.47 16 17 H 0.05 2.76 7.59 -2.91 -0.02 2.74 16 18 C 0.01 0.68 5.46 84.66 0.46 1.14 16 19 N -0.92 -52.70 13.29 21.45 0.28 -52.41 16 20 Si 0.95 43.56 29.54 68.60 2.03 45.59 16 21 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 O -0.19 -5.16 10.64 -2.42 -0.03 -5.18 16 25 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.17 2.45 8.06 -2.91 -0.02 2.42 16 29 H 0.16 2.70 8.06 -2.91 -0.02 2.67 16 30 H 0.07 1.36 7.45 -2.39 -0.02 1.34 16 31 H 0.05 1.07 8.13 -2.39 -0.02 1.05 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.34 9.70 7.55 -89.69 -0.68 9.02 16 34 H 0.11 2.72 8.06 -2.38 -0.02 2.70 16 35 H 0.04 1.17 7.43 -2.39 -0.02 1.16 16 36 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 37 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -65.13 331.46 4.67 -60.47 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.38 Total: 14.17 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: 4.72 Total: -19.70 kcal Atomic # 7 Polarization: -92.91 SS G_CDS: -2.43 Total: -95.34 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.03 Total: -5.18 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -65.13 4.67 -60.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182565935.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.285 kcal (2) G-P(sol) polarization free energy of solvation -65.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds