Wall clock time and date at job start Mon Mar 30 2020 06:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47316 * 2 1 4 4 H 1.08999 * 109.47104 * 304.99955 * 3 2 1 5 5 C 1.50699 * 109.46966 * 185.00602 * 3 2 1 6 6 H 1.08009 * 119.99508 * 240.00331 * 5 3 2 7 7 C 1.37872 * 120.00473 * 59.99950 * 5 3 2 8 8 N 1.31519 * 119.99920 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00225 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47033 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47245 * 119.99928 * 9 7 5 12 12 H 1.48498 * 109.46859 * 240.00025 * 9 7 5 13 13 N 1.46495 * 109.47103 * 65.00174 * 3 2 1 14 14 C 1.34774 * 120.00053 * 275.00194 * 13 3 2 15 15 O 1.21694 * 120.00357 * 4.33596 * 14 13 3 16 16 C 1.46682 * 119.99917 * 184.34051 * 14 13 3 17 17 C 1.37870 * 126.23279 * 5.00311 * 16 14 13 18 18 C 1.39837 * 107.08800 * 180.02562 * 17 16 14 19 19 C 1.35455 * 107.86025 * 0.02562 * 18 17 16 20 20 N 1.35525 * 108.87466 * 359.97438 * 19 18 17 21 21 C 1.46503 * 125.67963 * 179.73058 * 20 19 18 22 22 C 1.52999 * 117.49684 * 3.56348 * 21 20 19 23 23 C 1.52991 * 117.50122 * 294.93899 * 21 20 19 24 24 H 1.08999 * 109.47450 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46687 * 299.99917 * 1 2 3 26 26 H 1.08995 * 109.47252 * 59.99329 * 1 2 3 27 27 H 1.09005 * 109.46687 * 240.00083 * 2 1 3 28 28 H 1.08995 * 109.47252 * 120.00671 * 2 1 3 29 29 H 0.97000 * 120.00239 * 180.02562 * 8 7 5 30 30 H 0.97000 * 120.00023 * 94.99766 * 13 3 2 31 31 H 1.08004 * 126.46142 * 0.02562 * 17 16 14 32 32 H 1.07997 * 126.07453 * 180.02562 * 18 17 16 33 33 H 1.08002 * 125.55979 * 180.02562 * 19 18 17 34 34 H 1.09002 * 115.54710 * 149.26747 * 21 20 19 35 35 H 1.09001 * 117.49977 * 359.97438 * 22 21 20 36 36 H 1.09007 * 117.49613 * 145.01785 * 22 21 20 37 37 H 1.09005 * 117.50326 * 214.97522 * 23 21 20 38 38 H 1.09002 * 117.49995 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1240 6 1 4.1473 1.8887 0.6522 7 6 4.1432 0.8783 -1.2281 8 7 3.4061 0.3365 -2.1730 9 14 6.0049 0.8798 -1.3814 10 1 6.5988 1.5450 -0.1939 11 1 6.4961 -0.5192 -1.4630 12 1 6.3998 1.6155 -2.6094 13 7 1.6526 2.0974 1.2518 14 6 0.4353 2.6643 1.3670 15 8 -0.3709 2.5641 0.4609 16 6 0.0822 3.4023 2.5845 17 6 0.9218 3.6776 3.6429 18 6 0.1765 4.3972 4.5821 19 6 -1.0777 4.5451 4.0922 20 7 -1.1480 3.9452 2.8789 21 6 -2.3371 3.8796 2.0258 22 6 -3.5909 4.6149 2.5037 23 6 -3.5373 3.0864 2.5464 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.8291 -0.0620 -2.9497 30 1 2.2721 2.1230 1.9977 31 1 1.9595 3.3914 3.7302 32 1 0.5368 4.7691 5.5299 33 1 -1.8889 5.0582 4.5872 34 1 -2.1453 3.8560 0.9530 35 1 -3.5311 5.1470 3.4531 36 1 -4.2242 5.0753 1.7453 37 1 -4.1354 2.5412 1.8162 38 1 -3.4420 2.6129 3.5236 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183887964.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:16 Heat of formation + Delta-G solvation = 34.704676 kcal Electronic energy + Delta-G solvation = -19883.488886 eV Core-core repulsion = 16920.631733 eV Total energy + Delta-G solvation = -2962.857153 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.22760 -38.52250 -36.86678 -34.98004 -32.42709 -31.10198 -30.47895 -28.86619 -26.77580 -23.44049 -22.90657 -22.66331 -21.91346 -20.26704 -19.30985 -18.99264 -17.89479 -16.34980 -15.53833 -15.36686 -15.09514 -14.75055 -14.31067 -13.90558 -13.66525 -13.28547 -12.71945 -12.62530 -12.30399 -12.16393 -11.86278 -11.70000 -11.48658 -11.23803 -10.94701 -10.84184 -10.82664 -10.71068 -10.29391 -10.16116 -9.58817 -9.08595 -9.00741 -8.48579 -8.46278 -8.06077 -7.72234 -6.11297 -4.20351 1.83239 2.79592 2.94142 3.25192 3.33199 3.36239 3.60054 4.06398 4.14315 4.38935 4.48333 4.69751 4.84303 5.03932 5.20418 5.35642 5.42062 5.58140 5.61042 5.64124 5.82366 5.91562 6.25932 6.39313 6.42787 6.51146 6.70282 6.95124 7.09292 7.20953 7.25021 7.39408 7.41650 7.46858 7.65014 7.77061 7.92188 8.19385 8.68956 8.79082 9.13679 9.47026 10.94174 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.029201 B = 0.005202 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.641137 B = 5381.170812 C = 6024.751608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.273 3.727 4 H 0.049 0.951 5 C -0.533 4.533 6 H 0.063 0.937 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.901 3.099 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.693 5.693 14 C 0.571 3.429 15 O -0.555 6.555 16 C -0.026 4.026 17 C -0.153 4.153 18 C -0.206 4.206 19 C -0.005 4.005 20 N -0.384 5.384 21 C 0.064 3.936 22 C -0.181 4.181 23 C -0.177 4.177 24 H 0.020 0.980 25 H 0.041 0.959 26 H 0.049 0.951 27 H 0.099 0.901 28 H 0.031 0.969 29 H 0.264 0.736 30 H 0.391 0.609 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.160 0.840 34 H 0.156 0.844 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.773 6.356 11.174 16.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.172 3.828 4 H 0.067 0.933 5 C -0.571 4.571 6 H 0.081 0.919 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.340 5.340 14 C 0.357 3.643 15 O -0.437 6.437 16 C -0.140 4.140 17 C -0.179 4.179 18 C -0.230 4.230 19 C -0.139 4.139 20 N -0.056 5.056 21 C -0.039 4.039 22 C -0.218 4.218 23 C -0.215 4.215 24 H 0.039 0.961 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.117 0.883 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.224 0.776 31 H 0.162 0.838 32 H 0.156 0.844 33 H 0.178 0.822 34 H 0.173 0.827 35 H 0.119 0.881 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.584 6.151 10.061 15.846 hybrid contribution 1.268 0.005 0.363 1.319 sum -9.316 6.156 10.424 15.276 Atomic orbital electron populations 1.21858 0.98278 0.97806 1.01388 1.21935 0.92704 0.99704 1.02277 1.18822 0.94261 0.89222 0.80544 0.93323 1.21275 0.90631 1.38890 1.06311 0.91925 1.24878 0.98627 0.94784 0.95362 1.69909 1.35038 1.37706 1.09380 0.86396 0.84846 0.77757 0.78133 1.19679 1.20885 1.20915 1.46233 1.13963 1.55197 1.18628 1.16971 0.83311 0.79237 0.84772 1.90730 1.49569 1.61972 1.41399 1.20595 0.85917 1.08235 0.99268 1.21368 0.99356 1.03445 0.93735 1.20730 0.93552 1.07350 1.01390 1.21772 0.99780 1.04681 0.87626 1.43297 1.08065 1.39818 1.14409 1.22296 0.79340 1.06008 0.96252 1.23393 0.99215 0.95433 1.03785 1.23409 1.00523 0.93946 1.03633 0.96112 0.94024 0.93230 0.88289 0.95003 0.92639 0.77631 0.83842 0.84382 0.82223 0.82657 0.88127 0.87217 0.87304 0.88263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.47 37.16 0.31 -2.77 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.27 16 3 C 0.27 6.90 2.24 -69.09 -0.15 6.75 16 4 H 0.05 1.42 7.64 -51.93 -0.40 1.02 16 5 C -0.53 -14.07 8.73 -34.44 -0.30 -14.37 16 6 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.68 11.29 55.43 0.63 -24.06 16 9 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.69 -14.85 5.00 -56.25 -0.28 -15.14 16 14 C 0.57 11.95 6.50 -12.85 -0.08 11.87 16 15 O -0.56 -12.82 11.62 5.19 0.06 -12.76 16 16 C -0.03 -0.47 6.89 -81.98 -0.56 -1.03 16 17 C -0.15 -2.35 10.35 -39.12 -0.40 -2.76 16 18 C -0.21 -2.71 10.81 -39.98 -0.43 -3.15 16 19 C 0.00 -0.06 10.76 -16.91 -0.18 -0.24 16 20 N -0.38 -5.89 3.09 -105.81 -0.33 -6.22 16 21 C 0.06 0.88 6.14 -67.93 -0.42 0.47 16 22 C -0.18 -1.73 9.96 -26.73 -0.27 -2.00 16 23 C -0.18 -1.97 10.44 -26.74 -0.28 -2.25 16 24 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.04 0.93 5.54 -51.93 -0.29 0.65 16 26 H 0.05 1.18 7.80 -51.93 -0.40 0.78 16 27 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.39 7.45 7.47 -40.82 -0.31 7.15 16 31 H 0.14 1.97 7.48 -52.48 -0.39 1.58 16 32 H 0.14 1.45 8.06 -52.49 -0.42 1.02 16 33 H 0.16 1.50 6.88 -52.49 -0.36 1.14 16 34 H 0.16 2.49 6.65 -51.93 -0.35 2.14 16 35 H 0.10 0.83 6.71 -51.93 -0.35 0.48 16 36 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 310.82 15.07 4.68 4.68 Total: -1.00 -30.00 310.82 -8.50 -38.50 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -5.23 Total: 10.47 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -3.01 Total: -11.07 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 0.02 Total: -45.41 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.06 Total: -12.76 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.00 -8.50 -38.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183887964.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.203 kcal (2) G-P(sol) polarization free energy of solvation -30.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds