Wall clock time and date at job start Mon Mar 30 2020 06:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47243 * 2 1 4 4 O 1.42899 * 109.47220 * 239.99372 * 2 1 3 5 5 C 1.50705 * 109.47279 * 119.99105 * 2 1 3 6 6 C 1.38877 * 120.33765 * 265.00131 * 5 2 1 7 7 C 1.38299 * 118.50236 * 179.97438 * 6 5 2 8 8 C 1.39132 * 119.10002 * 0.25666 * 7 6 5 9 9 N 1.39000 * 119.70894 * 179.72581 * 8 7 6 10 10 C 1.46498 * 120.00262 * 88.54507 * 9 8 7 11 11 C 1.50702 * 109.47263 * 90.00175 * 10 9 8 12 12 H 1.08000 * 119.99713 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99999 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00414 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99585 * 180.02562 * 13 11 10 16 16 H 1.48491 * 109.47320 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47044 * 120.00027 * 15 13 11 18 18 H 1.48501 * 109.46891 * 239.99546 * 15 13 11 19 19 C 1.46501 * 120.00037 * 268.54957 * 9 8 7 20 20 C 1.52999 * 117.49627 * 3.35000 * 19 9 8 21 21 C 1.52995 * 117.49693 * 294.72799 * 19 9 8 22 22 N 1.32405 * 120.58786 * 359.47348 * 8 7 6 23 23 C 1.31970 * 121.61932 * 0.53681 * 22 8 7 24 24 H 1.09007 * 109.46943 * 300.00241 * 1 2 3 25 25 H 1.09000 * 109.47213 * 60.00072 * 1 2 3 26 26 H 1.08999 * 109.46845 * 180.02562 * 1 2 3 27 27 H 0.96694 * 114.00225 * 300.00202 * 4 2 1 28 28 H 1.07996 * 120.74920 * 359.97438 * 6 5 2 29 29 H 1.08006 * 120.44860 * 179.97438 * 7 6 5 30 30 H 1.09003 * 109.47691 * 210.00328 * 10 9 8 31 31 H 1.09004 * 109.47045 * 330.00235 * 10 9 8 32 32 H 0.96994 * 120.00233 * 179.97438 * 14 13 11 33 33 H 1.08996 * 115.55078 * 149.05601 * 19 9 8 34 34 H 1.08995 * 117.50174 * 359.97438 * 20 19 9 35 35 H 1.08995 * 117.50117 * 145.02639 * 20 19 9 36 36 H 1.09003 * 117.49983 * 214.97516 * 21 19 9 37 37 H 1.08999 * 117.49934 * 359.97438 * 21 19 9 38 38 H 1.08000 * 119.57225 * 179.70514 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6738 -1.1667 5 6 2.0324 -0.7102 1.2306 6 6 2.3647 0.0108 2.3701 7 6 2.8214 -0.6796 3.4780 8 6 2.9369 -2.0645 3.4121 9 7 3.3999 -2.7705 4.5163 10 6 2.4572 -3.2343 5.5373 11 6 1.9659 -4.6130 5.1781 12 1 2.3207 -5.0956 4.2795 13 6 1.0633 -5.2582 5.9968 14 7 0.6316 -4.6708 7.0914 15 14 0.4549 -6.9674 5.5519 16 1 1.0882 -7.4031 4.2814 17 1 0.8129 -7.9178 6.6353 18 1 -1.0204 -6.9398 5.3851 19 6 4.8307 -3.0507 4.6593 20 6 5.7729 -2.4728 3.6013 21 6 5.4767 -3.9737 3.6240 22 7 2.6049 -2.7166 2.3086 23 6 2.1664 -2.0840 1.2366 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.7211 -1.5953 -1.2328 28 1 2.2687 1.0862 2.3906 29 1 3.0891 -0.1503 4.3807 30 1 2.9571 -3.2676 6.5053 31 1 1.6111 -2.5490 5.5887 32 1 -0.0036 -5.1245 7.6671 33 1 5.1985 -3.1081 5.6837 34 1 5.3281 -1.8845 2.7988 35 1 6.7607 -2.1498 3.9296 36 1 6.2698 -4.6380 3.9673 37 1 4.8370 -4.3727 2.8369 38 1 1.9095 -2.6485 0.3524 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213248069.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:37 Heat of formation + Delta-G solvation = 25.685701 kcal Electronic energy + Delta-G solvation = -19738.383740 eV Core-core repulsion = 16775.135495 eV Total energy + Delta-G solvation = -2963.248245 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.15778 -37.86961 -36.62428 -33.74084 -32.63904 -32.03854 -30.85673 -28.86786 -26.43701 -24.06528 -23.21700 -22.33728 -21.74643 -21.60018 -19.83532 -17.39441 -16.66331 -16.14071 -16.10485 -15.53056 -14.91715 -14.64693 -14.32869 -14.27091 -13.58192 -13.35233 -12.89412 -12.66359 -12.38196 -12.30403 -12.05689 -11.94926 -11.21948 -11.15147 -11.00871 -10.96997 -10.59650 -10.43857 -10.30969 -10.11532 -9.70146 -9.43894 -9.36402 -8.94193 -8.40730 -8.33618 -6.90562 -5.93564 -3.99414 1.42674 1.66465 3.33032 3.40558 3.47606 3.97643 4.08368 4.36628 4.46139 4.51886 4.63729 4.93321 4.99901 5.05845 5.19509 5.33028 5.38349 5.45029 5.47394 5.59323 5.64598 5.74110 5.88443 5.96902 6.02215 6.06023 6.32749 6.37816 6.46311 6.50938 6.75379 6.83347 7.23697 7.40202 7.47437 7.98064 8.31987 8.40622 8.48201 8.76501 9.13224 9.66427 11.10457 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.017151 B = 0.006287 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.212894 B = 4452.828831 C = 5240.774042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.155 3.845 3 H 0.104 0.896 4 O -0.560 6.560 5 C -0.197 4.197 6 C -0.067 4.067 7 C -0.172 4.172 8 C 0.412 3.588 9 N -0.635 5.635 10 C 0.277 3.723 11 C -0.516 4.516 12 H 0.065 0.935 13 C 0.055 3.945 14 N -0.903 5.903 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.286 1.286 19 C 0.139 3.861 20 C -0.206 4.206 21 C -0.205 4.205 22 N -0.480 5.480 23 C 0.115 3.885 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.375 0.625 28 H 0.128 0.872 29 H 0.133 0.867 30 H 0.030 0.970 31 H 0.020 0.980 32 H 0.260 0.740 33 H 0.116 0.884 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.833 9.844 -10.530 14.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.095 3.905 3 H 0.121 0.879 4 O -0.366 6.366 5 C -0.199 4.199 6 C -0.093 4.093 7 C -0.195 4.195 8 C 0.185 3.815 9 N -0.360 5.360 10 C 0.158 3.842 11 C -0.556 4.556 12 H 0.083 0.917 13 C -0.145 4.145 14 N -0.544 5.544 15 Si 0.721 3.279 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.213 1.213 19 C 0.032 3.968 20 C -0.244 4.244 21 C -0.245 4.245 22 N -0.191 5.191 23 C -0.044 4.044 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.223 0.777 28 H 0.146 0.854 29 H 0.150 0.850 30 H 0.048 0.952 31 H 0.038 0.962 32 H 0.069 0.931 33 H 0.134 0.866 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.115 0.885 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.029 9.457 -10.423 14.639 hybrid contribution -0.889 -0.753 -0.019 1.165 sum 3.140 8.704 -10.442 13.952 Atomic orbital electron populations 1.22497 0.95539 1.03087 1.02693 1.20620 0.92803 0.95604 0.81428 0.87852 1.86583 1.77400 1.29312 1.43338 1.21371 1.04945 0.96136 0.97495 1.21193 0.96244 0.99752 0.92136 1.22413 1.02247 0.95489 0.99371 1.18159 0.89611 0.87202 0.86510 1.45779 1.03488 1.65323 1.21429 1.18978 0.86535 0.93771 0.84889 1.21845 1.24150 1.01466 1.08126 0.91727 1.24977 0.96481 0.98013 0.95064 1.69941 1.32850 1.38047 1.13541 0.86524 0.78379 0.84603 0.78439 1.19731 1.21117 1.21255 1.21131 0.80778 1.00624 0.94229 1.23199 1.00446 0.97599 1.03151 1.23430 1.03900 0.91798 1.05365 1.67835 1.09913 1.41388 0.99946 1.22181 0.95560 0.90628 0.96017 0.91317 0.91646 0.91963 0.77661 0.85397 0.84954 0.95192 0.96218 0.93056 0.86595 0.89978 0.89133 0.89578 0.88523 0.84170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 9.52 37.16 0.35 -1.38 16 2 C 0.16 1.68 3.85 -27.88 -0.11 1.57 16 3 H 0.10 1.01 8.06 -51.93 -0.42 0.60 16 4 O -0.56 -6.31 13.14 -35.23 -0.46 -6.77 16 5 C -0.20 -2.69 5.02 -104.46 -0.52 -3.21 16 6 C -0.07 -0.93 9.83 -39.32 -0.39 -1.31 16 7 C -0.17 -2.88 10.01 -39.23 -0.39 -3.28 16 8 C 0.41 8.27 4.45 -155.02 -0.69 7.58 16 9 N -0.63 -13.76 2.79 -167.62 -0.47 -14.23 16 10 C 0.28 7.15 5.48 -5.19 -0.03 7.12 16 11 C -0.52 -14.68 9.39 -34.44 -0.32 -15.00 16 12 H 0.06 1.91 7.81 -52.49 -0.41 1.50 16 13 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 14 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 15 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 16 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 C 0.14 2.62 6.57 -67.93 -0.45 2.17 16 20 C -0.21 -3.30 9.83 -26.73 -0.26 -3.56 16 21 C -0.20 -3.65 10.36 -26.73 -0.28 -3.92 16 22 N -0.48 -9.65 10.40 -12.44 -0.13 -9.78 16 23 C 0.12 1.83 10.49 -17.57 -0.18 1.65 16 24 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.38 3.17 7.41 45.56 0.34 3.51 16 28 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.13 2.05 8.06 -52.48 -0.42 1.63 16 30 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 31 H 0.02 0.55 8.05 -51.93 -0.42 0.13 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.12 2.04 8.14 -51.93 -0.42 1.62 16 34 H 0.08 1.41 7.06 -51.93 -0.37 1.04 16 35 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.10 1.95 8.14 -51.93 -0.42 1.53 16 38 H 0.14 1.81 6.61 -52.49 -0.35 1.46 16 LS Contribution 325.21 15.07 4.90 4.90 Total: -1.00 -32.09 325.21 -8.79 -40.89 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -4.98 Total: 3.93 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -3.37 Total: -10.10 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: 0.14 Total: -50.04 kcal Atomic # 8 Polarization: -6.31 SS G_CDS: -0.46 Total: -6.77 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.09 -8.79 -40.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213248069.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.571 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds