Wall clock time and date at job start Mon Mar 30 2020 06:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47243 * 2 1 4 4 O 1.42899 * 109.47220 * 239.99372 * 2 1 3 5 5 C 1.50705 * 109.47279 * 119.99105 * 2 1 3 6 6 C 1.38877 * 120.33765 * 265.00131 * 5 2 1 7 7 C 1.38299 * 118.50236 * 179.97438 * 6 5 2 8 8 C 1.39132 * 119.10002 * 0.25666 * 7 6 5 9 9 N 1.39000 * 119.70894 * 179.72581 * 8 7 6 10 10 C 1.46498 * 120.00262 * 88.54507 * 9 8 7 11 11 C 1.50702 * 109.47263 * 90.00175 * 10 9 8 12 12 H 1.08000 * 119.99713 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99999 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00414 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99585 * 180.02562 * 13 11 10 16 16 H 1.48491 * 109.47320 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47044 * 120.00027 * 15 13 11 18 18 H 1.48501 * 109.46891 * 239.99546 * 15 13 11 19 19 C 1.46501 * 120.00037 * 268.54957 * 9 8 7 20 20 C 1.52999 * 117.49627 * 3.35000 * 19 9 8 21 21 C 1.52995 * 117.49693 * 294.72799 * 19 9 8 22 22 N 1.32405 * 120.58786 * 359.47348 * 8 7 6 23 23 C 1.31970 * 121.61932 * 0.53681 * 22 8 7 24 24 H 1.09007 * 109.46943 * 300.00241 * 1 2 3 25 25 H 1.09000 * 109.47213 * 60.00072 * 1 2 3 26 26 H 1.08999 * 109.46845 * 180.02562 * 1 2 3 27 27 H 0.96694 * 114.00225 * 300.00202 * 4 2 1 28 28 H 1.07996 * 120.74920 * 359.97438 * 6 5 2 29 29 H 1.08006 * 120.44860 * 179.97438 * 7 6 5 30 30 H 1.09003 * 109.47691 * 210.00328 * 10 9 8 31 31 H 1.09004 * 109.47045 * 330.00235 * 10 9 8 32 32 H 0.96994 * 120.00233 * 179.97438 * 14 13 11 33 33 H 1.08996 * 115.55078 * 149.05601 * 19 9 8 34 34 H 1.08995 * 117.50174 * 359.97438 * 20 19 9 35 35 H 1.08995 * 117.50117 * 145.02639 * 20 19 9 36 36 H 1.09003 * 117.49983 * 214.97516 * 21 19 9 37 37 H 1.08999 * 117.49934 * 359.97438 * 21 19 9 38 38 H 1.08000 * 119.57225 * 179.70514 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6738 -1.1667 5 6 2.0324 -0.7102 1.2306 6 6 2.3647 0.0108 2.3701 7 6 2.8214 -0.6796 3.4780 8 6 2.9369 -2.0645 3.4121 9 7 3.3999 -2.7705 4.5163 10 6 2.4572 -3.2343 5.5373 11 6 1.9659 -4.6130 5.1781 12 1 2.3207 -5.0956 4.2795 13 6 1.0633 -5.2582 5.9968 14 7 0.6316 -4.6708 7.0914 15 14 0.4549 -6.9674 5.5519 16 1 1.0882 -7.4031 4.2814 17 1 0.8129 -7.9178 6.6353 18 1 -1.0204 -6.9398 5.3851 19 6 4.8307 -3.0507 4.6593 20 6 5.7729 -2.4728 3.6013 21 6 5.4767 -3.9737 3.6240 22 7 2.6049 -2.7166 2.3086 23 6 2.1664 -2.0840 1.2366 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.7211 -1.5953 -1.2328 28 1 2.2687 1.0862 2.3906 29 1 3.0891 -0.1503 4.3807 30 1 2.9571 -3.2676 6.5053 31 1 1.6111 -2.5490 5.5887 32 1 -0.0036 -5.1245 7.6671 33 1 5.1985 -3.1081 5.6837 34 1 5.3281 -1.8845 2.7988 35 1 6.7607 -2.1498 3.9296 36 1 6.2698 -4.6380 3.9673 37 1 4.8370 -4.3727 2.8369 38 1 1.9095 -2.6485 0.3524 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213248069.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:36 Heat of formation + Delta-G solvation = 4.564469 kcal Electronic energy + Delta-G solvation = -19739.299625 eV Core-core repulsion = 16775.135495 eV Total energy + Delta-G solvation = -2964.164130 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.40904 -39.07775 -37.79887 -35.55772 -34.15445 -33.53994 -32.03761 -30.16149 -28.27169 -25.28989 -24.59518 -24.14727 -23.11877 -22.68952 -21.22465 -18.59578 -18.38300 -17.61704 -17.44650 -17.26631 -16.23071 -15.89413 -15.65046 -15.54915 -14.87005 -14.54568 -14.45134 -14.06180 -13.83693 -13.66510 -13.39808 -13.05316 -12.91654 -12.77975 -12.51230 -12.37569 -12.16873 -12.14909 -12.00212 -11.33314 -11.27921 -11.16632 -10.67197 -10.59744 -10.28220 -9.62156 -8.63595 -8.03817 -6.27555 0.16723 0.45394 1.34516 1.35711 1.49269 2.36387 2.53082 2.85104 3.07181 3.12270 3.50211 3.62244 3.77219 4.00154 4.03220 4.07801 4.16109 4.25858 4.29707 4.41272 4.46720 4.73862 4.81204 4.84988 4.91616 5.00621 5.07959 5.11917 5.18883 5.22569 5.27591 5.32889 5.38430 5.67174 5.75970 6.20793 6.57273 6.73746 6.93575 6.99004 7.35149 7.45561 8.89567 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.017151 B = 0.006287 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.212894 B = 4452.828831 C = 5240.774042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.161 3.839 3 H 0.123 0.877 4 O -0.570 6.570 5 C -0.181 4.181 6 C -0.059 4.059 7 C -0.180 4.180 8 C 0.375 3.625 9 N -0.642 5.642 10 C 0.296 3.704 11 C -0.526 4.526 12 H 0.045 0.955 13 C 0.008 3.992 14 N -0.931 5.931 15 Si 0.956 3.044 16 H -0.276 1.276 17 H -0.273 1.273 18 H -0.279 1.279 19 C 0.110 3.890 20 C -0.168 4.168 21 C -0.210 4.210 22 N -0.523 5.523 23 C 0.099 3.901 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.054 0.946 27 H 0.386 0.614 28 H 0.170 0.830 29 H 0.139 0.861 30 H 0.014 0.986 31 H -0.008 1.008 32 H 0.264 0.736 33 H 0.122 0.878 34 H 0.072 0.928 35 H 0.125 0.875 36 H 0.106 0.894 37 H 0.066 0.934 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.995 10.984 -12.042 16.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.101 3.899 3 H 0.140 0.860 4 O -0.378 6.378 5 C -0.183 4.183 6 C -0.085 4.085 7 C -0.202 4.202 8 C 0.149 3.851 9 N -0.367 5.367 10 C 0.175 3.825 11 C -0.566 4.566 12 H 0.063 0.937 13 C -0.190 4.190 14 N -0.573 5.573 15 Si 0.782 3.218 16 H -0.200 1.200 17 H -0.199 1.199 18 H -0.205 1.205 19 C 0.004 3.996 20 C -0.206 4.206 21 C -0.250 4.250 22 N -0.235 5.235 23 C -0.060 4.060 24 H 0.088 0.912 25 H 0.100 0.900 26 H 0.074 0.926 27 H 0.236 0.764 28 H 0.187 0.813 29 H 0.157 0.843 30 H 0.032 0.968 31 H 0.010 0.990 32 H 0.073 0.927 33 H 0.140 0.860 34 H 0.090 0.910 35 H 0.143 0.857 36 H 0.125 0.875 37 H 0.085 0.915 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 4.209 10.604 -11.957 16.526 hybrid contribution -0.955 -1.054 0.346 1.463 sum 3.255 9.550 -11.610 15.382 Atomic orbital electron populations 1.22465 0.94434 1.02967 1.03584 1.20723 0.93480 0.95893 0.79757 0.85968 1.86569 1.77698 1.30337 1.43207 1.21757 1.02639 0.95324 0.98628 1.21639 0.94299 1.01686 0.90849 1.22488 1.02644 0.94303 1.00797 1.18356 0.92135 0.88278 0.86363 1.45538 1.03894 1.65770 1.21485 1.18439 0.86389 0.92079 0.85630 1.21984 1.24508 1.02682 1.07408 0.93656 1.25743 0.96584 1.01729 0.94967 1.70034 1.33334 1.39577 1.14307 0.85539 0.77934 0.80210 0.78146 1.20049 1.19891 1.20480 1.21382 0.80149 1.02794 0.95306 1.23157 1.00763 0.95769 1.00913 1.23363 1.04000 0.93395 1.04209 1.67683 1.11473 1.43175 1.01153 1.22636 0.95460 0.92171 0.95700 0.91153 0.90037 0.92647 0.76423 0.81272 0.84320 0.96828 0.98989 0.92676 0.86043 0.90972 0.85677 0.87531 0.91518 0.82010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.87 9.52 71.98 0.69 -2.19 16 2 C 0.16 2.97 3.85 29.85 0.11 3.08 16 3 H 0.12 1.86 8.06 -2.38 -0.02 1.84 16 4 O -0.57 -11.25 13.14 -148.98 -1.96 -13.21 16 5 C -0.18 -4.56 5.02 -19.76 -0.10 -4.66 16 6 C -0.06 -1.49 9.83 22.44 0.22 -1.27 16 7 C -0.18 -5.94 10.01 22.50 0.23 -5.72 16 8 C 0.37 15.38 4.45 133.06 0.59 15.97 16 9 N -0.64 -28.91 2.79 -684.22 -1.91 -30.83 16 10 C 0.30 16.02 5.48 85.63 0.47 16.49 16 11 C -0.53 -31.06 9.39 25.60 0.24 -30.82 16 12 H 0.05 2.80 7.81 -2.91 -0.02 2.77 16 13 C 0.01 0.44 5.46 84.65 0.46 0.91 16 14 N -0.93 -56.27 13.29 21.45 0.28 -55.99 16 15 Si 0.96 46.30 29.54 68.60 2.03 48.33 16 16 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 17 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 18 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 19 C 0.11 4.19 6.57 44.99 0.30 4.49 16 20 C -0.17 -5.22 9.83 30.59 0.30 -4.92 16 21 C -0.21 -7.52 10.36 30.59 0.32 -7.20 16 22 N -0.52 -21.54 10.40 -193.26 -2.01 -23.54 16 23 C 0.10 3.09 10.49 84.62 0.89 3.98 16 24 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 25 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.39 5.65 7.41 -74.06 -0.55 5.10 16 28 H 0.17 2.85 8.06 -2.91 -0.02 2.82 16 29 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 30 H 0.01 0.77 8.07 -2.39 -0.02 0.75 16 31 H -0.01 -0.46 8.05 -2.38 -0.02 -0.48 16 32 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 33 H 0.12 4.37 8.14 -2.39 -0.02 4.35 16 34 H 0.07 2.42 7.06 -2.39 -0.02 2.40 16 35 H 0.13 3.02 8.14 -2.39 -0.02 3.00 16 36 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 37 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 38 H 0.16 4.05 6.61 -2.91 -0.02 4.03 16 Total: -1.00 -71.53 325.21 1.65 -69.88 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.50 Total: 17.21 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: 4.71 Total: -11.85 kcal Atomic # 7 Polarization: -106.72 SS G_CDS: -3.63 Total: -110.36 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -1.96 Total: -13.21 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -71.53 1.65 -69.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213248069.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.446 kcal (2) G-P(sol) polarization free energy of solvation -71.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds