Wall clock time and date at job start Mon Mar 30 2020 06:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38130 * 120.03925 * 2 1 4 4 C 1.38258 * 120.07117 * 180.27697 * 3 2 1 5 5 C 1.38306 * 120.14573 * 359.76290 * 4 3 2 6 6 C 1.38091 * 120.06803 * 359.96538 * 5 4 3 7 7 C 1.50696 * 120.03524 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47040 * 300.01538 * 7 6 5 9 9 C 1.53001 * 109.47184 * 60.01510 * 7 6 5 10 10 C 1.38858 * 120.03190 * 179.74562 * 2 1 3 11 11 N 1.39903 * 120.07251 * 359.97438 * 10 2 1 12 12 C 1.34771 * 120.00265 * 308.15669 * 11 10 2 13 13 O 1.21592 * 119.99614 * 356.22810 * 12 11 10 14 14 N 1.34777 * 120.00433 * 176.22342 * 12 11 10 15 15 C 1.37165 * 120.00044 * 180.02562 * 14 12 11 16 16 H 1.07997 * 120.00315 * 0.02562 * 15 14 12 17 17 C 1.38889 * 119.99875 * 180.02562 * 15 14 12 18 18 N 1.31469 * 119.99837 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99940 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.46983 * 89.99688 * 19 17 15 21 21 H 1.48495 * 109.47025 * 210.00177 * 19 17 15 22 22 H 1.48502 * 109.47082 * 330.00070 * 19 17 15 23 23 H 1.09001 * 109.46847 * 278.23629 * 1 2 3 24 24 H 1.09003 * 109.46883 * 38.22784 * 1 2 3 25 25 H 1.08997 * 109.47287 * 158.23407 * 1 2 3 26 26 H 1.08004 * 119.96469 * 0.02562 * 3 2 1 27 27 H 1.08010 * 119.92937 * 179.75012 * 4 3 2 28 28 H 1.07998 * 119.96637 * 179.97438 * 5 4 3 29 29 H 1.09000 * 109.46934 * 180.02562 * 7 6 5 30 30 H 1.08995 * 109.47127 * 300.00187 * 8 7 6 31 31 H 1.09001 * 109.46988 * 60.00521 * 8 7 6 32 32 H 1.09004 * 109.47174 * 180.02562 * 8 7 6 33 33 H 1.09003 * 109.46816 * 60.00443 * 9 7 6 34 34 H 1.09000 * 109.46920 * 179.97438 * 9 7 6 35 35 H 1.08994 * 109.47554 * 300.00324 * 9 7 6 36 36 H 0.97003 * 119.99810 * 127.88554 * 11 10 2 37 37 H 0.97002 * 119.99854 * 359.97438 * 14 12 11 38 38 H 0.97006 * 119.99606 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1958 0.0000 4 6 3.5811 1.1965 -0.0058 5 6 4.2763 0.0009 -0.0066 6 6 3.5910 -1.1979 -0.0010 7 6 4.3493 -2.5002 -0.0025 8 6 5.2231 -2.5801 -1.2559 9 6 5.2353 -2.5759 1.2426 10 6 2.2020 -1.2021 0.0053 11 7 1.5047 -2.4150 0.0113 12 6 0.5440 -2.6356 0.9304 13 8 0.3302 -1.8094 1.7966 14 7 -0.1798 -3.7718 0.8895 15 6 -1.1578 -3.9959 1.8247 16 1 -1.3482 -3.2618 2.5936 17 6 -1.9033 -5.1670 1.7829 18 7 -2.8404 -5.3821 2.6795 19 14 -1.5744 -6.4365 0.4526 20 1 -0.5495 -7.3994 0.9297 21 1 -2.8308 -7.1644 0.1415 22 1 -1.0814 -5.7548 -0.7712 23 1 -0.3633 0.1472 1.0171 24 1 -0.3633 0.8073 -0.6359 25 1 -0.3634 -0.9544 -0.3811 26 1 1.6585 2.1311 0.0004 27 1 4.1194 2.1329 -0.0099 28 1 5.3563 0.0049 -0.0116 29 1 3.6440 -3.3313 0.0021 30 1 4.5919 -2.5261 -2.1428 31 1 5.9284 -1.7490 -1.2606 32 1 5.7713 -3.5223 -1.2572 33 1 4.6127 -2.5191 2.1355 34 1 5.7834 -3.5181 1.2417 35 1 5.9405 -1.7449 1.2379 36 1 1.7099 -3.0957 -0.6487 37 1 -0.0095 -4.4306 0.1983 38 1 -3.3613 -6.1999 2.6501 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217263942.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:53 Heat of formation + Delta-G solvation = -8.146181 kcal Electronic energy + Delta-G solvation = -20013.321511 eV Core-core repulsion = 17048.606206 eV Total energy + Delta-G solvation = -2964.715305 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.32967 -38.32960 -35.53348 -34.49419 -33.63843 -31.77225 -31.20188 -28.87149 -27.11987 -26.49265 -24.72810 -22.99592 -21.66032 -19.91949 -19.26752 -18.67469 -17.65581 -16.44508 -15.77572 -15.17756 -14.79781 -14.17137 -13.98519 -13.77682 -13.57790 -13.37779 -13.13234 -12.98321 -12.76360 -12.26425 -12.11558 -11.97423 -11.79926 -11.53448 -11.29094 -11.06683 -11.00885 -10.61640 -10.60773 -10.52296 -9.96387 -9.72800 -9.32705 -8.97517 -8.28527 -8.19043 -7.75612 -6.24657 -3.77977 1.60111 1.68187 3.04093 3.08708 3.16520 3.60714 3.94230 4.14251 4.18464 4.74538 4.88101 5.21436 5.24295 5.26675 5.30002 5.32585 5.45836 5.54074 5.61698 5.72837 5.80776 5.83757 5.90613 6.01374 6.13053 6.21259 6.24994 6.30623 6.31697 6.70022 6.72628 6.76992 6.91495 7.04249 7.25970 7.52185 7.81612 8.28742 8.76792 8.97914 9.46952 9.89169 10.88760 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.022621 B = 0.006130 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.484171 B = 4566.287790 C = 5328.997485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.072 4.072 3 C -0.115 4.115 4 C -0.135 4.135 5 C -0.112 4.112 6 C -0.097 4.097 7 C -0.056 4.056 8 C -0.141 4.141 9 C -0.140 4.140 10 C 0.183 3.817 11 N -0.705 5.705 12 C 0.662 3.338 13 O -0.590 6.590 14 N -0.608 5.608 15 C -0.291 4.291 16 H 0.120 0.880 17 C 0.040 3.960 18 N -0.889 5.889 19 Si 0.878 3.122 20 H -0.272 1.272 21 H -0.277 1.277 22 H -0.272 1.272 23 H 0.086 0.914 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.119 0.881 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.394 0.606 37 H 0.369 0.631 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.613 6.647 -9.859 18.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.074 4.074 3 C -0.133 4.133 4 C -0.153 4.153 5 C -0.131 4.131 6 C -0.099 4.099 7 C -0.075 4.075 8 C -0.199 4.199 9 C -0.197 4.197 10 C 0.088 3.912 11 N -0.356 5.356 12 C 0.364 3.636 13 O -0.469 6.469 14 N -0.251 5.251 15 C -0.420 4.420 16 H 0.138 0.862 17 C -0.162 4.162 18 N -0.529 5.529 19 Si 0.705 3.295 20 H -0.198 1.198 21 H -0.203 1.203 22 H -0.198 1.198 23 H 0.105 0.895 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.137 0.863 27 H 0.134 0.866 28 H 0.135 0.865 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.228 0.772 37 H 0.201 0.799 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.140 7.153 -8.949 18.199 hybrid contribution 0.184 -1.472 -1.240 1.933 sum 14.324 5.682 -10.189 18.474 Atomic orbital electron populations 1.20798 0.90598 1.01464 1.02995 1.19946 0.96707 0.91838 0.98933 1.20825 0.94047 0.97016 1.01453 1.20950 0.94146 0.97584 1.02662 1.20648 0.99128 0.91483 1.01819 1.19741 0.91907 0.95269 1.02998 1.20021 0.96816 0.94964 0.95664 1.21854 0.99405 1.01545 0.97064 1.21806 0.99178 1.01263 0.97495 1.17046 0.89281 0.85156 0.99742 1.42651 1.40256 1.17137 1.35540 1.15624 0.80911 0.84086 0.83006 1.90814 1.71411 1.46258 1.38451 1.41351 1.35335 1.17552 1.30818 1.19256 1.09334 1.05589 1.07848 0.86201 1.24908 0.96457 0.97330 0.97515 1.69629 1.21998 1.26749 1.34557 0.86699 0.78761 0.82327 0.81685 1.19799 1.20275 1.19787 0.89521 0.93246 0.91931 0.86323 0.86571 0.86457 0.90466 0.92726 0.92549 0.92615 0.92301 0.92681 0.92678 0.77159 0.79858 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.85 8.21 36.01 0.30 -1.55 16 2 C -0.07 -1.24 5.48 -104.43 -0.57 -1.81 16 3 C -0.11 -1.67 9.73 -39.61 -0.39 -2.05 16 4 C -0.13 -1.73 10.04 -39.55 -0.40 -2.13 16 5 C -0.11 -1.45 8.71 -39.61 -0.35 -1.79 16 6 C -0.10 -1.40 4.80 -104.43 -0.50 -1.90 16 7 C -0.06 -0.70 3.04 -91.77 -0.28 -0.98 16 8 C -0.14 -1.40 9.01 37.16 0.33 -1.06 16 9 C -0.14 -1.66 9.01 37.16 0.33 -1.33 16 10 C 0.18 3.15 5.85 -83.70 -0.49 2.66 16 11 N -0.70 -12.63 3.98 -14.23 -0.06 -12.68 16 12 C 0.66 15.10 6.65 -86.92 -0.58 14.52 16 13 O -0.59 -15.63 12.92 5.28 0.07 -15.57 16 14 N -0.61 -14.40 5.10 -15.34 -0.08 -14.48 16 15 C -0.29 -8.19 10.16 -14.92 -0.15 -8.34 16 16 H 0.12 3.84 7.39 -52.49 -0.39 3.46 16 17 C 0.04 1.09 5.50 -17.47 -0.10 0.99 16 18 N -0.89 -26.07 13.96 55.49 0.77 -25.29 16 19 Si 0.88 19.48 27.74 -169.99 -4.71 14.77 16 20 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.27 -5.50 6.52 56.52 0.37 -5.13 16 23 H 0.09 1.78 7.07 -51.93 -0.37 1.42 16 24 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 25 H 0.06 1.23 6.14 -51.93 -0.32 0.91 16 26 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 27 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 28 H 0.12 1.24 7.10 -52.49 -0.37 0.86 16 29 H 0.08 1.03 6.46 -51.93 -0.34 0.69 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.51 7.39 -51.93 -0.38 0.13 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.58 7.39 -51.93 -0.38 0.20 16 36 H 0.39 5.83 8.10 -40.82 -0.33 5.50 16 37 H 0.37 7.71 5.78 -40.82 -0.24 7.47 16 38 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 308.54 15.07 4.65 4.65 Total: -1.00 -31.87 308.54 -7.43 -39.30 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -5.24 Total: 14.06 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -2.83 Total: -4.76 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: 0.64 Total: -52.45 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: 0.07 Total: -15.57 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.71 Total: 14.77 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.87 -7.43 -39.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217263942.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.158 kcal (2) G-P(sol) polarization free energy of solvation -31.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds