Wall clock time and date at job start Mon Mar 30 2020 06:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38130 * 120.03925 * 2 1 4 4 C 1.38258 * 120.07117 * 180.27697 * 3 2 1 5 5 C 1.38306 * 120.14573 * 359.76290 * 4 3 2 6 6 C 1.38091 * 120.06803 * 359.96538 * 5 4 3 7 7 C 1.50696 * 120.03524 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47040 * 300.01538 * 7 6 5 9 9 C 1.53001 * 109.47184 * 60.01510 * 7 6 5 10 10 C 1.38858 * 120.03190 * 179.74562 * 2 1 3 11 11 N 1.39903 * 120.07251 * 359.97438 * 10 2 1 12 12 C 1.34771 * 120.00265 * 308.15669 * 11 10 2 13 13 O 1.21592 * 119.99614 * 356.22810 * 12 11 10 14 14 N 1.34777 * 120.00433 * 176.22342 * 12 11 10 15 15 C 1.37165 * 120.00044 * 180.02562 * 14 12 11 16 16 H 1.07997 * 120.00315 * 0.02562 * 15 14 12 17 17 C 1.38889 * 119.99875 * 180.02562 * 15 14 12 18 18 N 1.31469 * 119.99837 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99940 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.46983 * 89.99688 * 19 17 15 21 21 H 1.48495 * 109.47025 * 210.00177 * 19 17 15 22 22 H 1.48502 * 109.47082 * 330.00070 * 19 17 15 23 23 H 1.09001 * 109.46847 * 278.23629 * 1 2 3 24 24 H 1.09003 * 109.46883 * 38.22784 * 1 2 3 25 25 H 1.08997 * 109.47287 * 158.23407 * 1 2 3 26 26 H 1.08004 * 119.96469 * 0.02562 * 3 2 1 27 27 H 1.08010 * 119.92937 * 179.75012 * 4 3 2 28 28 H 1.07998 * 119.96637 * 179.97438 * 5 4 3 29 29 H 1.09000 * 109.46934 * 180.02562 * 7 6 5 30 30 H 1.08995 * 109.47127 * 300.00187 * 8 7 6 31 31 H 1.09001 * 109.46988 * 60.00521 * 8 7 6 32 32 H 1.09004 * 109.47174 * 180.02562 * 8 7 6 33 33 H 1.09003 * 109.46816 * 60.00443 * 9 7 6 34 34 H 1.09000 * 109.46920 * 179.97438 * 9 7 6 35 35 H 1.08994 * 109.47554 * 300.00324 * 9 7 6 36 36 H 0.97003 * 119.99810 * 127.88554 * 11 10 2 37 37 H 0.97002 * 119.99854 * 359.97438 * 14 12 11 38 38 H 0.97006 * 119.99606 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1958 0.0000 4 6 3.5811 1.1965 -0.0058 5 6 4.2763 0.0009 -0.0066 6 6 3.5910 -1.1979 -0.0010 7 6 4.3493 -2.5002 -0.0025 8 6 5.2231 -2.5801 -1.2559 9 6 5.2353 -2.5759 1.2426 10 6 2.2020 -1.2021 0.0053 11 7 1.5047 -2.4150 0.0113 12 6 0.5440 -2.6356 0.9304 13 8 0.3302 -1.8094 1.7966 14 7 -0.1798 -3.7718 0.8895 15 6 -1.1578 -3.9959 1.8247 16 1 -1.3482 -3.2618 2.5936 17 6 -1.9033 -5.1670 1.7829 18 7 -2.8404 -5.3821 2.6795 19 14 -1.5744 -6.4365 0.4526 20 1 -0.5495 -7.3994 0.9297 21 1 -2.8308 -7.1644 0.1415 22 1 -1.0814 -5.7548 -0.7712 23 1 -0.3633 0.1472 1.0171 24 1 -0.3633 0.8073 -0.6359 25 1 -0.3634 -0.9544 -0.3811 26 1 1.6585 2.1311 0.0004 27 1 4.1194 2.1329 -0.0099 28 1 5.3563 0.0049 -0.0116 29 1 3.6440 -3.3313 0.0021 30 1 4.5919 -2.5261 -2.1428 31 1 5.9284 -1.7490 -1.2606 32 1 5.7713 -3.5223 -1.2572 33 1 4.6127 -2.5191 2.1355 34 1 5.7834 -3.5181 1.2417 35 1 5.9405 -1.7449 1.2379 36 1 1.7099 -3.0957 -0.6487 37 1 -0.0095 -4.4306 0.1983 38 1 -3.3613 -6.1999 2.6501 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217263942.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:53 Heat of formation + Delta-G solvation = -28.902393 kcal Electronic energy + Delta-G solvation = -20014.221568 eV Core-core repulsion = 17048.606206 eV Total energy + Delta-G solvation = -2965.615362 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.75657 -39.86808 -36.60830 -36.21779 -35.39864 -33.74335 -32.52981 -30.12387 -27.94814 -27.83098 -26.65704 -24.07208 -23.08383 -21.55492 -20.67526 -20.30537 -19.23569 -18.00946 -17.11359 -16.77392 -16.23572 -15.57954 -15.51365 -15.07617 -14.87948 -14.77303 -14.53249 -14.32068 -14.11395 -14.01493 -13.19860 -13.11816 -13.00942 -12.90265 -12.60968 -12.43088 -12.31989 -12.02130 -11.97160 -11.71677 -11.53022 -11.48545 -11.02083 -10.73320 -10.26684 -9.41237 -9.07102 -8.36687 -5.97584 0.45060 0.51692 1.28527 1.35475 1.42067 2.05470 2.24160 2.25490 2.88264 3.21308 3.64905 3.73898 3.90397 4.12410 4.27938 4.34181 4.42320 4.45500 4.59661 4.72809 4.74208 4.79887 4.84847 4.99983 5.03707 5.10923 5.19706 5.28847 5.32752 5.42330 5.44660 5.59943 5.63850 5.71341 5.78803 5.86072 6.23126 6.29243 6.80824 6.91859 7.51024 8.02776 8.80960 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.022621 B = 0.006130 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.484171 B = 4566.287790 C = 5328.997485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.101 4.101 3 C -0.122 4.122 4 C -0.123 4.123 5 C -0.109 4.109 6 C -0.095 4.095 7 C -0.059 4.059 8 C -0.134 4.134 9 C -0.138 4.138 10 C 0.144 3.856 11 N -0.685 5.685 12 C 0.669 3.331 13 O -0.633 6.633 14 N -0.608 5.608 15 C -0.308 4.308 16 H 0.059 0.941 17 C -0.015 4.015 18 N -0.940 5.940 19 Si 0.962 3.038 20 H -0.259 1.259 21 H -0.275 1.275 22 H -0.238 1.238 23 H 0.050 0.950 24 H 0.076 0.924 25 H 0.037 0.963 26 H 0.137 0.863 27 H 0.153 0.847 28 H 0.151 0.849 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.027 0.973 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.410 0.590 37 H 0.386 0.614 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.934 6.541 -12.612 22.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.103 4.103 3 C -0.141 4.141 4 C -0.142 4.142 5 C -0.128 4.128 6 C -0.097 4.097 7 C -0.078 4.078 8 C -0.191 4.191 9 C -0.195 4.195 10 C 0.050 3.950 11 N -0.337 5.337 12 C 0.371 3.629 13 O -0.515 6.515 14 N -0.253 5.253 15 C -0.437 4.437 16 H 0.077 0.923 17 C -0.213 4.213 18 N -0.581 5.581 19 Si 0.783 3.217 20 H -0.183 1.183 21 H -0.200 1.200 22 H -0.161 1.161 23 H 0.068 0.932 24 H 0.095 0.905 25 H 0.056 0.944 26 H 0.155 0.845 27 H 0.171 0.829 28 H 0.169 0.831 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.247 0.753 37 H 0.221 0.779 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 17.515 7.071 -11.747 22.244 hybrid contribution -0.775 -1.261 -0.310 1.512 sum 16.741 5.811 -12.057 21.433 Atomic orbital electron populations 1.20618 0.92167 1.01083 1.01103 1.20079 0.96004 0.93330 1.00909 1.21097 0.95227 0.96637 1.01095 1.21403 0.93427 0.99245 1.00084 1.21077 1.00804 0.90699 1.00173 1.20030 0.90783 0.97142 1.01754 1.20099 0.96956 0.93348 0.97374 1.21803 0.99128 1.02934 0.95272 1.21798 0.98962 1.02986 0.95771 1.17407 0.90601 0.84498 1.02502 1.42256 1.38775 1.18150 1.34498 1.15815 0.81034 0.83087 0.83011 1.90788 1.72677 1.47524 1.40482 1.41005 1.35052 1.18504 1.30784 1.18799 1.11578 1.05192 1.08154 0.92279 1.25907 0.95397 0.99547 1.00474 1.69811 1.23301 1.27925 1.37103 0.85405 0.79034 0.78522 0.78783 1.18322 1.20038 1.16118 0.93176 0.90536 0.94371 0.84540 0.82902 0.83136 0.91865 0.92763 0.91169 0.91228 0.95346 0.91074 0.90883 0.75272 0.77873 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.53 8.21 71.24 0.58 -2.94 16 2 C -0.10 -3.49 5.48 -19.74 -0.11 -3.60 16 3 C -0.12 -3.33 9.73 22.25 0.22 -3.12 16 4 C -0.12 -2.71 10.04 22.29 0.22 -2.48 16 5 C -0.11 -2.41 8.71 22.25 0.19 -2.22 16 6 C -0.09 -2.55 4.80 -19.74 -0.09 -2.65 16 7 C -0.06 -1.33 3.04 -11.54 -0.04 -1.36 16 8 C -0.13 -2.13 9.01 71.98 0.65 -1.49 16 9 C -0.14 -2.94 9.01 71.98 0.65 -2.29 16 10 C 0.14 4.92 5.85 38.16 0.22 5.14 16 11 N -0.69 -24.76 3.98 -317.19 -1.26 -26.02 16 12 C 0.67 31.78 6.65 179.06 1.19 32.97 16 13 O -0.63 -35.81 12.92 -4.01 -0.05 -35.86 16 14 N -0.61 -29.58 5.10 -320.72 -1.63 -31.22 16 15 C -0.31 -18.25 10.16 84.02 0.85 -17.39 16 16 H 0.06 4.15 7.39 -2.91 -0.02 4.12 16 17 C -0.02 -0.87 5.50 84.90 0.47 -0.40 16 18 N -0.94 -57.37 13.96 21.66 0.30 -57.07 16 19 Si 0.96 39.80 27.74 68.60 1.90 41.70 16 20 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 21 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 22 H -0.24 -8.41 6.52 99.48 0.65 -7.77 16 23 H 0.05 2.23 7.07 -2.39 -0.02 2.21 16 24 H 0.08 2.35 8.13 -2.39 -0.02 2.33 16 25 H 0.04 1.58 6.14 -2.39 -0.01 1.56 16 26 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 27 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 28 H 0.15 2.34 7.10 -2.91 -0.02 2.32 16 29 H 0.06 1.58 6.46 -2.39 -0.02 1.56 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 0.93 7.39 -2.39 -0.02 0.91 16 32 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.07 1.27 7.39 -2.39 -0.02 1.25 16 36 H 0.41 11.84 8.10 -92.71 -0.75 11.09 16 37 H 0.39 15.78 5.78 -92.71 -0.54 15.25 16 38 H 0.28 15.52 8.31 -92.70 -0.77 14.75 16 Total: -1.00 -75.65 308.54 4.00 -71.65 By element: Atomic # 1 Polarization: 38.92 SS G_CDS: -0.26 Total: 38.66 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 5.01 Total: -1.84 kcal Atomic # 7 Polarization: -111.72 SS G_CDS: -2.60 Total: -114.31 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -0.05 Total: -35.86 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 1.90 Total: 41.70 kcal Total: -75.65 4.00 -71.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217263942.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.749 kcal (2) G-P(sol) polarization free energy of solvation -75.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds