Wall clock time and date at job start Mon Mar 30 2020 06:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46811 * 2 1 4 4 N 1.46504 * 109.47054 * 119.99551 * 2 1 3 5 5 C 1.46497 * 119.99711 * 114.56960 * 4 2 1 6 6 C 1.50695 * 109.47578 * 90.00043 * 5 4 2 7 7 C 1.38235 * 120.00252 * 89.99731 * 6 5 4 8 8 C 1.38234 * 119.99902 * 179.97438 * 7 6 5 9 9 C 1.38233 * 120.00100 * 359.97438 * 8 7 6 10 10 C 1.38237 * 120.00204 * 0.27821 * 9 8 7 11 11 C 1.38238 * 119.99681 * 359.51036 * 10 9 8 12 12 C 1.34774 * 120.00008 * 294.56129 * 4 2 1 13 13 O 1.21583 * 119.99884 * 184.76439 * 12 4 2 14 14 N 1.34774 * 120.00243 * 4.77392 * 12 4 2 15 15 C 1.37189 * 120.00263 * 184.92736 * 14 12 4 16 16 H 1.08003 * 119.99617 * 359.97438 * 15 14 12 17 17 C 1.38879 * 120.00108 * 179.97438 * 15 14 12 18 18 N 1.31474 * 120.00118 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99950 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47302 * 89.99784 * 19 17 15 21 21 H 1.48499 * 109.47142 * 210.00024 * 19 17 15 22 22 H 1.48501 * 109.47140 * 330.00075 * 19 17 15 23 23 H 1.09004 * 109.47192 * 304.99725 * 1 2 3 24 24 H 1.08998 * 109.47436 * 65.00437 * 1 2 3 25 25 H 1.09010 * 109.46821 * 185.00091 * 1 2 3 26 26 H 1.08997 * 109.47395 * 239.99872 * 2 1 3 27 27 H 1.09000 * 109.46933 * 174.97997 * 3 2 1 28 28 H 1.09001 * 109.46785 * 294.97575 * 3 2 1 29 29 H 1.09000 * 109.47321 * 54.97788 * 3 2 1 30 30 H 1.08999 * 109.47252 * 329.99469 * 5 4 2 31 31 H 1.09005 * 109.46834 * 209.99841 * 5 4 2 32 32 H 1.07999 * 119.99892 * 359.97438 * 7 6 5 33 33 H 1.08001 * 119.99739 * 179.97438 * 8 7 6 34 34 H 1.08009 * 120.00089 * 180.02562 * 9 8 7 35 35 H 1.08003 * 120.00080 * 179.72653 * 10 9 8 36 36 H 1.07999 * 119.99952 * 180.27471 * 11 10 9 37 37 H 0.97001 * 120.00024 * 4.92356 * 14 12 4 38 38 H 0.96996 * 120.00075 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.7598 -1.9472 1.0652 6 6 4.2323 -1.6512 0.9425 7 6 5.0187 -1.5741 2.0768 8 6 6.3695 -1.3032 1.9642 9 6 6.9341 -1.1098 0.7174 10 6 6.1468 -1.1817 -0.4166 11 6 4.7967 -1.4570 -0.3043 12 6 1.7855 -0.1696 2.4173 13 8 2.2640 -0.6952 3.4037 14 7 1.0222 0.9337 2.5449 15 6 0.8677 1.5227 3.7743 16 1 1.3575 1.1018 4.6399 17 6 0.0815 2.6599 3.9056 18 7 -0.5143 3.1725 2.8517 19 14 -0.1282 3.4622 5.5795 20 1 0.9369 4.4776 5.7787 21 1 -1.4580 4.1192 5.6504 22 1 -0.0300 2.4274 6.6401 23 1 -0.3634 0.5894 0.8419 24 1 -0.3634 0.4342 -0.9314 25 1 -0.3633 -1.0239 0.0896 26 1 1.8933 -0.5138 -0.8899 27 1 3.1262 1.4439 0.0899 28 1 1.7519 1.9297 -0.9316 29 1 1.6050 1.9817 0.8416 30 1 2.4206 -2.4781 0.1757 31 1 2.5856 -2.5654 1.9459 32 1 4.5776 -1.7256 3.0509 33 1 6.9838 -1.2426 2.8505 34 1 7.9897 -0.8985 0.6293 35 1 6.5871 -1.0263 -1.3905 36 1 4.1825 -1.5176 -1.1906 37 1 0.5820 1.3115 1.7674 38 1 -1.0631 3.9670 2.9434 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217263970.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:09 Heat of formation + Delta-G solvation = 11.248261 kcal Electronic energy + Delta-G solvation = -20274.660484 eV Core-core repulsion = 17310.786185 eV Total energy + Delta-G solvation = -2963.874299 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.74678 -38.54359 -35.55032 -34.36873 -32.48210 -30.76236 -30.61898 -29.92433 -26.73550 -25.96662 -24.31512 -22.41935 -21.51655 -21.09744 -18.96590 -17.81151 -16.58829 -16.17756 -15.49760 -15.10724 -14.72557 -14.38542 -14.09803 -13.59645 -13.46818 -13.20853 -13.04097 -12.80274 -12.59727 -12.37112 -11.92974 -11.63607 -11.42308 -11.12883 -11.04818 -10.97992 -10.76382 -10.65257 -10.51560 -10.22730 -9.86287 -9.42163 -8.85107 -8.65104 -8.44832 -7.97485 -7.74452 -6.27060 -3.67084 1.57039 1.68295 3.26965 3.33038 3.38353 3.66688 4.18212 4.35125 4.38179 5.02583 5.10511 5.20118 5.22831 5.33183 5.39626 5.45103 5.58962 5.68924 5.74349 5.76790 5.94911 6.03164 6.09210 6.18678 6.25244 6.27240 6.35265 6.37410 6.67634 6.71392 6.78381 6.86039 6.97340 7.27011 7.32123 7.65151 7.82417 8.46128 8.82148 9.31894 9.75627 10.26536 10.93147 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.023114 B = 0.006150 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.083717 B = 4551.447043 C = 5119.604679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.142 3.858 3 C -0.184 4.184 4 N -0.633 5.633 5 C 0.178 3.822 6 C -0.095 4.095 7 C -0.087 4.087 8 C -0.127 4.127 9 C -0.126 4.126 10 C -0.131 4.131 11 C -0.111 4.111 12 C 0.663 3.337 13 O -0.623 6.623 14 N -0.593 5.593 15 C -0.284 4.284 16 H 0.099 0.901 17 C 0.016 3.984 18 N -0.915 5.915 19 Si 0.928 3.072 20 H -0.281 1.281 21 H -0.285 1.285 22 H -0.272 1.272 23 H 0.079 0.921 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.132 0.868 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.399 0.601 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.512 -7.003 -9.418 13.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.038 3.962 3 C -0.242 4.242 4 N -0.372 5.372 5 C 0.054 3.946 6 C -0.097 4.097 7 C -0.106 4.106 8 C -0.145 4.145 9 C -0.144 4.144 10 C -0.149 4.149 11 C -0.129 4.129 12 C 0.365 3.635 13 O -0.506 6.506 14 N -0.241 5.241 15 C -0.414 4.414 16 H 0.117 0.883 17 C -0.184 4.184 18 N -0.558 5.558 19 Si 0.756 3.244 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.197 1.197 23 H 0.098 0.902 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.150 0.850 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.242 0.758 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.672 -7.163 -8.706 13.637 hybrid contribution -0.305 0.857 0.270 0.949 sum 7.367 -6.306 -8.436 12.853 Atomic orbital electron populations 1.22472 0.95630 1.02504 1.03198 1.20904 0.93769 0.93475 0.88063 1.22505 1.01787 0.96323 1.03590 1.47196 1.59850 1.25246 1.04872 1.20009 0.86178 0.86123 1.02330 1.20466 0.96687 0.99451 0.93070 1.21319 0.93168 0.96838 0.99250 1.21165 0.95452 1.00577 0.97276 1.21073 0.99428 1.01034 0.92900 1.21022 0.94155 1.01514 0.98173 1.20997 0.94925 1.00153 0.96866 1.15870 0.82674 0.82708 0.82242 1.90689 1.59099 1.64236 1.36560 1.41911 1.45909 1.24667 1.11620 1.19607 1.27542 1.07431 0.86845 0.88268 1.25114 0.97203 0.97226 0.98864 1.69621 1.33613 1.23543 1.28987 0.85879 0.77311 0.79149 0.82044 1.20708 1.21121 1.19657 0.90240 0.91882 0.92512 0.90398 0.92607 0.92181 0.89227 0.90959 0.89513 0.85030 0.86486 0.86737 0.86665 0.86633 0.75809 0.92218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.92 9.10 37.16 0.34 -2.58 16 2 C 0.14 2.33 3.26 -67.93 -0.22 2.11 16 3 C -0.18 -3.23 8.91 37.16 0.33 -2.90 16 4 N -0.63 -12.14 2.41 -173.17 -0.42 -12.56 16 5 C 0.18 2.90 5.45 -5.20 -0.03 2.87 16 6 C -0.10 -1.51 5.46 -104.63 -0.57 -2.09 16 7 C -0.09 -1.47 9.58 -39.58 -0.38 -1.85 16 8 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 9 C -0.13 -1.65 10.05 -39.58 -0.40 -2.05 16 10 C -0.13 -1.67 10.05 -39.58 -0.40 -2.06 16 11 C -0.11 -1.52 9.70 -39.58 -0.38 -1.90 16 12 C 0.66 16.27 7.62 -86.92 -0.66 15.60 16 13 O -0.62 -17.03 14.77 5.29 0.08 -16.96 16 14 N -0.59 -15.43 3.85 -15.34 -0.06 -15.48 16 15 C -0.28 -8.10 9.68 -14.92 -0.14 -8.25 16 16 H 0.10 2.96 7.17 -52.48 -0.38 2.58 16 17 C 0.02 0.43 5.50 -17.47 -0.10 0.33 16 18 N -0.91 -25.26 13.05 55.49 0.72 -24.53 16 19 Si 0.93 21.63 29.55 -169.99 -5.02 16.61 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 H 0.08 1.60 5.30 -51.93 -0.28 1.33 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.06 0.87 8.14 -51.92 -0.42 0.44 16 26 H 0.08 1.04 7.84 -51.93 -0.41 0.63 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.09 1.94 5.03 -51.93 -0.26 1.68 16 30 H 0.07 0.94 7.91 -51.93 -0.41 0.52 16 31 H 0.09 1.53 7.44 -51.93 -0.39 1.14 16 32 H 0.13 2.47 7.39 -52.49 -0.39 2.08 16 33 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 34 H 0.11 1.20 8.06 -52.48 -0.42 0.78 16 35 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 36 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.40 9.84 2.25 -40.82 -0.09 9.75 16 38 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 312.80 15.07 4.71 4.71 Total: -1.00 -31.39 312.80 -8.11 -39.50 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -5.11 Total: 13.73 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -3.01 Total: -5.02 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: 0.25 Total: -52.58 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: 0.08 Total: -16.96 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.39 -8.11 -39.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217263970.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.743 kcal (2) G-P(sol) polarization free energy of solvation -31.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds