Wall clock time and date at job start Mon Mar 30 2020 06:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46811 * 2 1 4 4 N 1.46504 * 109.47054 * 119.99551 * 2 1 3 5 5 C 1.46497 * 119.99711 * 114.56960 * 4 2 1 6 6 C 1.50695 * 109.47578 * 90.00043 * 5 4 2 7 7 C 1.38235 * 120.00252 * 89.99731 * 6 5 4 8 8 C 1.38234 * 119.99902 * 179.97438 * 7 6 5 9 9 C 1.38233 * 120.00100 * 359.97438 * 8 7 6 10 10 C 1.38237 * 120.00204 * 0.27821 * 9 8 7 11 11 C 1.38238 * 119.99681 * 359.51036 * 10 9 8 12 12 C 1.34774 * 120.00008 * 294.56129 * 4 2 1 13 13 O 1.21583 * 119.99884 * 184.76439 * 12 4 2 14 14 N 1.34774 * 120.00243 * 4.77392 * 12 4 2 15 15 C 1.37189 * 120.00263 * 184.92736 * 14 12 4 16 16 H 1.08003 * 119.99617 * 359.97438 * 15 14 12 17 17 C 1.38879 * 120.00108 * 179.97438 * 15 14 12 18 18 N 1.31474 * 120.00118 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99950 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47302 * 89.99784 * 19 17 15 21 21 H 1.48499 * 109.47142 * 210.00024 * 19 17 15 22 22 H 1.48501 * 109.47140 * 330.00075 * 19 17 15 23 23 H 1.09004 * 109.47192 * 304.99725 * 1 2 3 24 24 H 1.08998 * 109.47436 * 65.00437 * 1 2 3 25 25 H 1.09010 * 109.46821 * 185.00091 * 1 2 3 26 26 H 1.08997 * 109.47395 * 239.99872 * 2 1 3 27 27 H 1.09000 * 109.46933 * 174.97997 * 3 2 1 28 28 H 1.09001 * 109.46785 * 294.97575 * 3 2 1 29 29 H 1.09000 * 109.47321 * 54.97788 * 3 2 1 30 30 H 1.08999 * 109.47252 * 329.99469 * 5 4 2 31 31 H 1.09005 * 109.46834 * 209.99841 * 5 4 2 32 32 H 1.07999 * 119.99892 * 359.97438 * 7 6 5 33 33 H 1.08001 * 119.99739 * 179.97438 * 8 7 6 34 34 H 1.08009 * 120.00089 * 180.02562 * 9 8 7 35 35 H 1.08003 * 120.00080 * 179.72653 * 10 9 8 36 36 H 1.07999 * 119.99952 * 180.27471 * 11 10 9 37 37 H 0.97001 * 120.00024 * 4.92356 * 14 12 4 38 38 H 0.96996 * 120.00075 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.7598 -1.9472 1.0652 6 6 4.2323 -1.6512 0.9425 7 6 5.0187 -1.5741 2.0768 8 6 6.3695 -1.3032 1.9642 9 6 6.9341 -1.1098 0.7174 10 6 6.1468 -1.1817 -0.4166 11 6 4.7967 -1.4570 -0.3043 12 6 1.7855 -0.1696 2.4173 13 8 2.2640 -0.6952 3.4037 14 7 1.0222 0.9337 2.5449 15 6 0.8677 1.5227 3.7743 16 1 1.3575 1.1018 4.6399 17 6 0.0815 2.6599 3.9056 18 7 -0.5143 3.1725 2.8517 19 14 -0.1282 3.4622 5.5795 20 1 0.9369 4.4776 5.7787 21 1 -1.4580 4.1192 5.6504 22 1 -0.0300 2.4274 6.6401 23 1 -0.3634 0.5894 0.8419 24 1 -0.3634 0.4342 -0.9314 25 1 -0.3633 -1.0239 0.0896 26 1 1.8933 -0.5138 -0.8899 27 1 3.1262 1.4439 0.0899 28 1 1.7519 1.9297 -0.9316 29 1 1.6050 1.9817 0.8416 30 1 2.4206 -2.4781 0.1757 31 1 2.5856 -2.5654 1.9459 32 1 4.5776 -1.7256 3.0509 33 1 6.9838 -1.2426 2.8505 34 1 7.9897 -0.8985 0.6293 35 1 6.5871 -1.0263 -1.3905 36 1 4.1825 -1.5176 -1.1906 37 1 0.5820 1.3115 1.7674 38 1 -1.0631 3.9670 2.9434 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217263970.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:08 Heat of formation + Delta-G solvation = -6.624587 kcal Electronic energy + Delta-G solvation = -20275.435509 eV Core-core repulsion = 17310.786185 eV Total energy + Delta-G solvation = -2964.649324 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.34005 -39.80386 -37.22587 -36.25770 -33.99677 -32.70349 -31.71187 -31.28549 -28.09203 -27.60442 -26.04643 -23.63356 -22.96431 -22.27812 -20.79687 -19.69808 -17.91116 -17.70056 -17.12926 -16.37622 -16.31405 -15.84985 -15.57454 -15.32839 -15.22523 -14.69544 -14.34246 -14.19968 -13.80787 -13.53924 -13.47483 -13.12590 -13.03013 -12.91075 -12.53447 -12.31386 -12.26160 -12.10940 -11.97611 -11.76532 -11.59977 -11.42960 -10.77114 -9.94438 -9.74735 -9.67039 -9.38363 -8.37418 -5.82939 0.45376 0.57400 1.40603 1.40815 1.53804 2.14960 2.42551 2.46706 3.03846 3.32757 3.66450 3.95811 3.99198 4.06671 4.21412 4.23703 4.32486 4.40827 4.41557 4.66077 4.73770 4.80804 4.82612 4.86597 4.92625 4.96919 5.17454 5.23157 5.35447 5.38066 5.44061 5.61750 5.67189 5.72854 5.86946 6.03150 6.19792 6.52219 6.82608 7.22987 7.80581 8.32336 8.82540 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.023114 B = 0.006150 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.083717 B = 4551.447043 C = 5119.604679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.139 3.861 3 C -0.177 4.177 4 N -0.625 5.625 5 C 0.174 3.826 6 C -0.111 4.111 7 C -0.120 4.120 8 C -0.140 4.140 9 C -0.125 4.125 10 C -0.126 4.126 11 C -0.108 4.108 12 C 0.657 3.343 13 O -0.664 6.664 14 N -0.601 5.601 15 C -0.318 4.318 16 H 0.072 0.928 17 C -0.020 4.020 18 N -0.930 5.930 19 Si 0.991 3.009 20 H -0.274 1.274 21 H -0.271 1.271 22 H -0.276 1.276 23 H 0.034 0.966 24 H 0.095 0.905 25 H 0.065 0.935 26 H 0.128 0.872 27 H 0.047 0.953 28 H 0.092 0.908 29 H 0.043 0.957 30 H 0.118 0.882 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.125 0.875 34 H 0.145 0.855 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.406 0.594 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.184 -6.811 -12.442 16.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.037 3.963 3 C -0.236 4.236 4 N -0.362 5.362 5 C 0.051 3.949 6 C -0.113 4.113 7 C -0.139 4.139 8 C -0.158 4.158 9 C -0.143 4.143 10 C -0.144 4.144 11 C -0.126 4.126 12 C 0.359 3.641 13 O -0.549 6.549 14 N -0.251 5.251 15 C -0.448 4.448 16 H 0.090 0.910 17 C -0.218 4.218 18 N -0.572 5.572 19 Si 0.815 3.185 20 H -0.199 1.199 21 H -0.195 1.195 22 H -0.201 1.201 23 H 0.053 0.947 24 H 0.114 0.886 25 H 0.084 0.916 26 H 0.146 0.854 27 H 0.067 0.933 28 H 0.111 0.889 29 H 0.062 0.938 30 H 0.136 0.864 31 H 0.078 0.922 32 H 0.112 0.888 33 H 0.143 0.857 34 H 0.162 0.838 35 H 0.169 0.831 36 H 0.165 0.835 37 H 0.250 0.750 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.343 -6.983 -11.789 16.042 hybrid contribution -0.448 0.759 1.136 1.438 sum 7.895 -6.224 -10.652 14.647 Atomic orbital electron populations 1.22418 0.95485 1.02474 1.02873 1.21221 0.93882 0.93019 0.88225 1.22421 1.00917 0.96957 1.03264 1.47233 1.59275 1.25813 1.03906 1.20236 0.86754 0.84727 1.03153 1.20446 0.96126 1.00831 0.93889 1.21229 0.94727 0.99596 0.98360 1.21344 0.94646 1.00853 0.98940 1.21458 1.01069 0.99623 0.92119 1.21492 0.93765 0.99597 0.99560 1.21316 0.95859 0.98869 0.96542 1.16219 0.82006 0.82228 0.83639 1.90650 1.60305 1.65258 1.38734 1.41946 1.46732 1.25281 1.11128 1.19564 1.29001 1.08850 0.87403 0.90960 1.25882 0.96322 0.97066 1.02490 1.69700 1.33407 1.23684 1.30416 0.84962 0.77900 0.78033 0.77619 1.19930 1.19546 1.20075 0.94707 0.88633 0.91607 0.85435 0.93339 0.88882 0.93776 0.86438 0.92190 0.88821 0.85728 0.83771 0.83061 0.83464 0.74989 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.33 9.10 71.98 0.66 -4.67 16 2 C 0.14 4.22 3.26 44.99 0.15 4.37 16 3 C -0.18 -5.96 8.91 71.98 0.64 -5.32 16 4 N -0.62 -23.87 2.41 -820.06 -1.97 -25.84 16 5 C 0.17 5.58 5.45 85.63 0.47 6.04 16 6 C -0.11 -3.47 5.46 -19.87 -0.11 -3.58 16 7 C -0.12 -4.26 9.58 22.27 0.21 -4.05 16 8 C -0.14 -4.11 10.05 22.27 0.22 -3.89 16 9 C -0.12 -2.93 10.05 22.27 0.22 -2.71 16 10 C -0.13 -2.71 10.05 22.27 0.22 -2.48 16 11 C -0.11 -2.56 9.70 22.27 0.22 -2.34 16 12 C 0.66 33.76 7.62 179.06 1.36 35.12 16 13 O -0.66 -38.88 14.77 -3.98 -0.06 -38.93 16 14 N -0.60 -32.75 3.85 -320.71 -1.23 -33.98 16 15 C -0.32 -19.05 9.68 84.01 0.81 -18.24 16 16 H 0.07 4.61 7.17 -2.91 -0.02 4.59 16 17 C -0.02 -1.09 5.50 84.90 0.47 -0.63 16 18 N -0.93 -52.01 13.05 21.65 0.28 -51.73 16 19 Si 0.99 45.10 29.55 68.60 2.03 47.13 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H 0.03 1.40 5.30 -2.39 -0.01 1.39 16 24 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 26 H 0.13 2.69 7.84 -2.39 -0.02 2.67 16 27 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.04 1.92 5.03 -2.39 -0.01 1.91 16 30 H 0.12 2.65 7.91 -2.39 -0.02 2.63 16 31 H 0.06 2.22 7.44 -2.38 -0.02 2.20 16 32 H 0.09 3.93 7.39 -2.91 -0.02 3.91 16 33 H 0.12 3.28 8.06 -2.91 -0.02 3.26 16 34 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 35 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 36 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 37 H 0.41 20.73 2.25 -92.71 -0.21 20.53 16 38 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -73.38 312.80 5.44 -67.95 By element: Atomic # 1 Polarization: 36.93 SS G_CDS: 0.85 Total: 37.77 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: 5.55 Total: -2.36 kcal Atomic # 7 Polarization: -108.63 SS G_CDS: -2.93 Total: -111.55 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -0.06 Total: -38.93 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -73.38 5.44 -67.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217263970.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.321 kcal (2) G-P(sol) polarization free energy of solvation -73.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds