Wall clock time and date at job start Mon Mar 30 2020 06:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38234 * 119.99770 * 269.72838 * 3 2 1 5 5 C 1.38239 * 119.99901 * 179.76875 * 4 3 2 6 6 C 1.38240 * 119.99645 * 0.50240 * 5 4 3 7 7 C 1.50698 * 119.99659 * 179.72727 * 6 5 4 8 8 H 1.08996 * 109.46813 * 160.02550 * 7 6 5 9 9 C 1.53003 * 109.47156 * 280.02259 * 7 6 5 10 10 N 1.46496 * 109.47170 * 40.02325 * 7 6 5 11 11 C 1.34780 * 120.00143 * 154.99888 * 10 7 6 12 12 O 1.21588 * 119.99519 * 0.02562 * 11 10 7 13 13 N 1.34770 * 120.00436 * 180.02562 * 11 10 7 14 14 C 1.37199 * 120.00139 * 180.02562 * 13 11 10 15 15 H 1.08000 * 119.99761 * 359.97438 * 14 13 11 16 16 C 1.38870 * 119.99813 * 179.97438 * 14 13 11 17 17 N 1.31480 * 120.00474 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99820 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47151 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47184 * 120.00436 * 18 16 14 21 21 H 1.48501 * 109.47306 * 240.00333 * 18 16 14 22 22 C 1.38227 * 120.00205 * 359.74956 * 6 5 4 23 23 C 1.38232 * 119.99860 * 90.00280 * 3 2 1 24 24 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 29 29 H 1.08001 * 120.00330 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.99843 * 180.23314 * 5 4 3 31 31 H 1.09000 * 109.47306 * 180.02562 * 9 7 6 32 32 H 1.09000 * 109.47042 * 300.00536 * 9 7 6 33 33 H 1.08996 * 109.47022 * 60.00419 * 9 7 6 34 34 H 0.96999 * 120.00479 * 334.99897 * 10 7 6 35 35 H 0.96999 * 120.00186 * 359.97438 * 13 11 10 36 36 H 0.96998 * 120.00201 * 179.97438 * 17 16 14 37 37 H 1.07996 * 120.00251 * 179.97438 * 22 6 5 38 38 H 1.07998 * 120.00407 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7242 3.3755 -1.1972 6 6 2.9545 4.0272 0.0000 7 6 3.4577 5.4477 -0.0001 8 1 3.2478 5.9075 0.9656 9 6 4.9671 5.4541 -0.2506 10 7 2.7839 6.2044 -1.0581 11 6 2.6643 7.5431 -0.9577 12 8 3.1162 8.1228 0.0109 13 7 2.0440 8.2392 -1.9307 14 6 1.9228 9.6021 -1.8287 15 1 2.3242 10.1169 -0.9683 16 6 1.2840 10.3194 -2.8316 17 7 0.7949 9.6925 -3.8788 18 14 1.1184 12.1748 -2.6923 19 1 1.7471 12.6344 -1.4279 20 1 1.7968 12.8203 -3.8450 21 1 -0.3197 12.5450 -2.6937 22 6 2.7238 3.3757 1.1971 23 6 2.2627 2.0725 1.1971 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 2.0926 1.5598 -2.1325 30 1 2.9047 3.8844 -2.1326 31 1 5.3311 6.4815 -0.2502 32 1 5.4684 4.8910 0.5366 33 1 5.1770 4.9943 -1.2163 34 1 2.4237 5.7420 -1.8310 35 1 1.6838 7.7769 -2.7036 36 1 0.3484 10.1936 -4.5791 37 1 2.9042 3.8847 2.1324 38 1 2.0832 1.5632 2.1325 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217264080.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:37 Heat of formation + Delta-G solvation = -22.154976 kcal Electronic energy + Delta-G solvation = -18987.784455 eV Core-core repulsion = 16022.461682 eV Total energy + Delta-G solvation = -2965.322772 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.84019 -38.52696 -35.75084 -33.90598 -33.22168 -31.34652 -30.93584 -29.94152 -28.36427 -24.90518 -24.21599 -22.83710 -22.02019 -20.42493 -19.51931 -17.87008 -17.46751 -16.03570 -15.64302 -15.19273 -14.67914 -14.39814 -14.16240 -13.88159 -13.74676 -13.37171 -13.30249 -13.15099 -13.01303 -12.68940 -12.18278 -11.84934 -11.58317 -11.44018 -11.38497 -11.16147 -11.02680 -10.85700 -10.56118 -10.26638 -10.10577 -9.49166 -8.91305 -8.82929 -8.53555 -8.26567 -7.83552 -6.26488 -3.68285 1.32139 1.41826 3.26107 3.33671 3.40449 3.68771 3.94973 4.38420 4.42184 4.61126 4.71708 4.88019 5.01328 5.03936 5.17607 5.36106 5.42601 5.45911 5.49981 5.61815 5.68065 5.72034 5.79548 5.85117 5.97280 6.03897 6.04186 6.08583 6.28359 6.40504 6.54687 6.58500 6.69694 7.01034 7.38245 7.64557 7.75464 8.48393 8.85275 9.31331 9.75363 10.24439 10.93318 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.030297 B = 0.003861 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.973352 B = 7249.809508 C = 7762.222092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 C -0.090 4.090 4 C -0.116 4.116 5 C -0.109 4.109 6 C -0.083 4.083 7 C 0.206 3.794 8 H 0.091 0.909 9 C -0.156 4.156 10 N -0.756 5.756 11 C 0.659 3.341 12 O -0.627 6.627 13 N -0.589 5.589 14 C -0.282 4.282 15 H 0.102 0.898 16 C 0.015 3.985 17 N -0.913 5.913 18 Si 0.929 3.071 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.107 4.107 23 C -0.117 4.117 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.386 0.614 35 H 0.390 0.610 36 H 0.267 0.733 37 H 0.124 0.876 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.989 -19.159 5.054 19.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 C -0.090 4.090 4 C -0.134 4.134 5 C -0.127 4.127 6 C -0.084 4.084 7 C 0.100 3.900 8 H 0.109 0.891 9 C -0.214 4.214 10 N -0.414 5.414 11 C 0.360 3.640 12 O -0.510 6.510 13 N -0.230 5.230 14 C -0.412 4.412 15 H 0.120 0.880 16 C -0.185 4.185 17 N -0.555 5.555 18 Si 0.757 3.243 19 H -0.194 1.194 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.126 4.126 23 C -0.135 4.135 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.219 0.781 35 H 0.223 0.777 36 H 0.077 0.923 37 H 0.142 0.858 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.285 -18.494 5.761 19.505 hybrid contribution -0.528 0.470 -0.896 1.141 sum 1.757 -18.025 4.866 18.753 Atomic orbital electron populations 1.21754 0.94786 1.01501 1.02431 1.20520 0.96161 0.92796 1.02568 1.19863 0.99656 0.96228 0.93297 1.20978 1.00105 0.94830 0.97445 1.20970 0.99321 0.94575 0.97818 1.20117 0.98873 0.95956 0.93468 1.19386 0.91386 0.86268 0.92994 0.89141 1.22182 0.95299 1.02778 1.01172 1.45137 1.65181 1.06303 1.24798 1.15898 0.82698 0.80566 0.84861 1.90726 1.57564 1.68862 1.33829 1.41002 1.54332 1.07507 1.20137 1.19614 1.34191 0.80913 1.06466 0.88035 1.25151 0.97551 1.00262 0.95494 1.69650 1.39840 1.36225 1.09831 0.85804 0.77739 0.82595 0.78189 1.19400 1.20982 1.20973 1.21008 0.99174 0.94767 0.97602 1.20958 1.00306 0.94838 0.97399 0.92441 0.92579 0.92530 0.91255 0.91208 0.86230 0.85966 0.91343 0.92429 0.92849 0.78091 0.77667 0.92304 0.85850 0.86276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.89 37.16 0.37 -0.79 16 2 C -0.08 -0.67 6.07 -27.88 -0.17 -0.84 16 3 C -0.09 -0.96 5.13 -104.62 -0.54 -1.49 16 4 C -0.12 -1.29 9.70 -39.58 -0.38 -1.68 16 5 C -0.11 -1.37 9.06 -39.58 -0.36 -1.73 16 6 C -0.08 -1.15 4.95 -104.63 -0.52 -1.66 16 7 C 0.21 3.36 2.78 -69.08 -0.19 3.17 16 8 H 0.09 1.64 7.44 -51.93 -0.39 1.26 16 9 C -0.16 -2.34 9.46 37.16 0.35 -1.98 16 10 N -0.76 -14.31 5.03 -59.82 -0.30 -14.61 16 11 C 0.66 16.24 8.48 -86.92 -0.74 15.50 16 12 O -0.63 -17.55 15.58 5.29 0.08 -17.47 16 13 N -0.59 -15.49 5.29 -15.34 -0.08 -15.57 16 14 C -0.28 -8.11 9.68 -14.92 -0.14 -8.25 16 15 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 16 C 0.02 0.42 5.50 -17.47 -0.10 0.33 16 17 N -0.91 -25.67 13.05 55.49 0.72 -24.94 16 18 Si 0.93 21.73 29.55 -169.99 -5.02 16.70 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C -0.11 -1.32 9.67 -39.58 -0.38 -1.71 16 23 C -0.12 -1.28 9.70 -39.58 -0.38 -1.66 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 28 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 29 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.12 1.45 6.92 -52.49 -0.36 1.09 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.39 6.44 6.89 -40.82 -0.28 6.16 16 35 H 0.39 9.85 7.91 -40.82 -0.32 9.52 16 36 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.12 1.37 8.04 -52.49 -0.42 0.95 16 38 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 323.70 15.07 4.88 4.88 Total: -1.00 -32.18 323.70 -8.41 -40.59 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -5.51 Total: 13.22 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -3.18 Total: -2.80 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: 0.34 Total: -55.12 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: 0.08 Total: -17.47 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.18 -8.41 -40.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264080.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.435 kcal (2) G-P(sol) polarization free energy of solvation -32.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds