Wall clock time and date at job start Mon Mar 30 2020 06:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38234 * 119.99770 * 269.72838 * 3 2 1 5 5 C 1.38239 * 119.99901 * 179.76875 * 4 3 2 6 6 C 1.38240 * 119.99645 * 0.50240 * 5 4 3 7 7 C 1.50698 * 119.99659 * 179.72727 * 6 5 4 8 8 H 1.08996 * 109.46813 * 160.02550 * 7 6 5 9 9 C 1.53003 * 109.47156 * 280.02259 * 7 6 5 10 10 N 1.46496 * 109.47170 * 40.02325 * 7 6 5 11 11 C 1.34780 * 120.00143 * 154.99888 * 10 7 6 12 12 O 1.21588 * 119.99519 * 0.02562 * 11 10 7 13 13 N 1.34770 * 120.00436 * 180.02562 * 11 10 7 14 14 C 1.37199 * 120.00139 * 180.02562 * 13 11 10 15 15 H 1.08000 * 119.99761 * 359.97438 * 14 13 11 16 16 C 1.38870 * 119.99813 * 179.97438 * 14 13 11 17 17 N 1.31480 * 120.00474 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99820 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47151 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47184 * 120.00436 * 18 16 14 21 21 H 1.48501 * 109.47306 * 240.00333 * 18 16 14 22 22 C 1.38227 * 120.00205 * 359.74956 * 6 5 4 23 23 C 1.38232 * 119.99860 * 90.00280 * 3 2 1 24 24 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 29 29 H 1.08001 * 120.00330 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.99843 * 180.23314 * 5 4 3 31 31 H 1.09000 * 109.47306 * 180.02562 * 9 7 6 32 32 H 1.09000 * 109.47042 * 300.00536 * 9 7 6 33 33 H 1.08996 * 109.47022 * 60.00419 * 9 7 6 34 34 H 0.96999 * 120.00479 * 334.99897 * 10 7 6 35 35 H 0.96999 * 120.00186 * 359.97438 * 13 11 10 36 36 H 0.96998 * 120.00201 * 179.97438 * 17 16 14 37 37 H 1.07996 * 120.00251 * 179.97438 * 22 6 5 38 38 H 1.07998 * 120.00407 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7242 3.3755 -1.1972 6 6 2.9545 4.0272 0.0000 7 6 3.4577 5.4477 -0.0001 8 1 3.2478 5.9075 0.9656 9 6 4.9671 5.4541 -0.2506 10 7 2.7839 6.2044 -1.0581 11 6 2.6643 7.5431 -0.9577 12 8 3.1162 8.1228 0.0109 13 7 2.0440 8.2392 -1.9307 14 6 1.9228 9.6021 -1.8287 15 1 2.3242 10.1169 -0.9683 16 6 1.2840 10.3194 -2.8316 17 7 0.7949 9.6925 -3.8788 18 14 1.1184 12.1748 -2.6923 19 1 1.7471 12.6344 -1.4279 20 1 1.7968 12.8203 -3.8450 21 1 -0.3197 12.5450 -2.6937 22 6 2.7238 3.3757 1.1971 23 6 2.2627 2.0725 1.1971 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 2.0926 1.5598 -2.1325 30 1 2.9047 3.8844 -2.1326 31 1 5.3311 6.4815 -0.2502 32 1 5.4684 4.8910 0.5366 33 1 5.1770 4.9943 -1.2163 34 1 2.4237 5.7420 -1.8310 35 1 1.6838 7.7769 -2.7036 36 1 0.3484 10.1936 -4.5791 37 1 2.9042 3.8847 2.1324 38 1 2.0832 1.5632 2.1325 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217264080.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:37 Heat of formation + Delta-G solvation = -41.938643 kcal Electronic energy + Delta-G solvation = -18988.642339 eV Core-core repulsion = 16022.461682 eV Total energy + Delta-G solvation = -2966.180657 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.08824 -40.10941 -37.10138 -35.84546 -34.41104 -33.29508 -31.88894 -31.37203 -29.36716 -26.86699 -25.25515 -23.78054 -23.14915 -21.68076 -21.02961 -19.94293 -19.15722 -17.32022 -16.87386 -16.38993 -16.20229 -15.91244 -15.74962 -15.20830 -15.03499 -14.68876 -14.41619 -14.23400 -14.04200 -13.97947 -13.49607 -13.33101 -12.92486 -12.79582 -12.54311 -12.35988 -12.27080 -12.08588 -12.03111 -11.64362 -11.58853 -11.52811 -10.90328 -10.13889 -9.83121 -9.79357 -9.43190 -8.39106 -5.87593 0.38104 0.51431 1.41584 1.43144 1.57775 2.15986 2.39237 2.52727 2.86601 3.31279 3.64333 3.91509 3.97652 4.02172 4.14572 4.24300 4.39177 4.43881 4.54783 4.59947 4.67850 4.74165 4.78092 4.95155 5.07643 5.10659 5.12812 5.22422 5.26749 5.41884 5.42880 5.51902 5.60898 5.74600 5.80346 5.87554 6.11818 6.47837 6.86342 7.19032 7.74966 8.22858 8.80670 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.030297 B = 0.003861 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.973352 B = 7249.809508 C = 7762.222092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 C -0.088 4.088 4 C -0.120 4.120 5 C -0.118 4.118 6 C -0.100 4.100 7 C 0.205 3.795 8 H 0.067 0.933 9 C -0.148 4.148 10 N -0.738 5.738 11 C 0.659 3.341 12 O -0.664 6.664 13 N -0.598 5.598 14 C -0.315 4.315 15 H 0.079 0.921 16 C -0.021 4.021 17 N -0.931 5.931 18 Si 0.995 3.005 19 H -0.273 1.273 20 H -0.272 1.272 21 H -0.272 1.272 22 C -0.116 4.116 23 C -0.119 4.119 24 H 0.048 0.952 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.139 0.861 30 H 0.125 0.875 31 H 0.037 0.963 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.398 0.602 35 H 0.393 0.607 36 H 0.274 0.726 37 H 0.129 0.871 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.555 -20.838 4.796 21.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.088 4.088 4 C -0.138 4.138 5 C -0.136 4.136 6 C -0.101 4.101 7 C 0.100 3.900 8 H 0.085 0.915 9 C -0.206 4.206 10 N -0.396 5.396 11 C 0.359 3.641 12 O -0.550 6.550 13 N -0.239 5.239 14 C -0.445 4.445 15 H 0.097 0.903 16 C -0.219 4.219 17 N -0.574 5.574 18 Si 0.819 3.181 19 H -0.198 1.198 20 H -0.198 1.198 21 H -0.198 1.198 22 C -0.135 4.135 23 C -0.137 4.137 24 H 0.067 0.933 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.157 0.843 30 H 0.142 0.858 31 H 0.056 0.944 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.234 0.766 35 H 0.227 0.773 36 H 0.083 0.917 37 H 0.147 0.853 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.851 -20.237 5.485 21.049 hybrid contribution -0.404 0.859 -0.795 1.238 sum 1.447 -19.378 4.691 19.990 Atomic orbital electron populations 1.21750 0.94569 1.02380 1.01726 1.20581 0.96193 0.91207 1.03879 1.20240 0.98256 0.97427 0.92887 1.21241 0.99516 0.94277 0.98733 1.21064 0.99730 0.95404 0.97415 1.19866 1.01082 0.94375 0.94728 1.19485 0.92133 0.87538 0.90865 0.91491 1.22096 0.94394 1.01287 1.02852 1.45002 1.64392 1.04399 1.25810 1.16119 0.81918 0.82086 0.83936 1.90685 1.58917 1.70277 1.35168 1.40967 1.55128 1.07118 1.20688 1.19587 1.35988 0.82223 1.06693 0.90310 1.25972 0.96478 1.04688 0.94729 1.69722 1.39587 1.37946 1.10122 0.84832 0.78132 0.76928 0.78174 1.19766 1.19756 1.19785 1.21166 0.99335 0.95615 0.97354 1.21241 0.99476 0.94226 0.98708 0.93268 0.90966 0.93130 0.89880 0.90045 0.84269 0.85754 0.94424 0.89950 0.91597 0.76594 0.77303 0.91690 0.85313 0.84002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.89 71.98 0.71 -1.20 16 2 C -0.08 -1.06 6.07 29.85 0.18 -0.88 16 3 C -0.09 -1.64 5.13 -19.87 -0.10 -1.74 16 4 C -0.12 -2.42 9.70 22.27 0.22 -2.20 16 5 C -0.12 -2.83 9.06 22.27 0.20 -2.63 16 6 C -0.10 -2.68 4.95 -19.87 -0.10 -2.78 16 7 C 0.21 6.81 2.78 44.25 0.12 6.93 16 8 H 0.07 2.53 7.44 -2.39 -0.02 2.52 16 9 C -0.15 -4.46 9.46 71.98 0.68 -3.78 16 10 N -0.74 -28.51 5.03 -461.42 -2.32 -30.83 16 11 C 0.66 33.54 8.48 179.06 1.52 35.06 16 12 O -0.66 -38.77 15.58 -3.99 -0.06 -38.83 16 13 N -0.60 -32.30 5.29 -320.71 -1.70 -34.00 16 14 C -0.32 -18.58 9.68 84.00 0.81 -17.77 16 15 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 16 C -0.02 -1.14 5.50 84.90 0.47 -0.68 16 17 N -0.93 -52.13 13.05 21.65 0.28 -51.85 16 18 Si 1.00 44.45 29.55 68.60 2.03 46.48 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 20 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 C -0.12 -2.75 9.67 22.27 0.22 -2.54 16 23 C -0.12 -2.33 9.70 22.27 0.22 -2.11 16 24 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.08 0.89 8.09 -2.39 -0.02 0.87 16 28 H 0.08 0.90 8.08 -2.39 -0.02 0.88 16 29 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 30 H 0.12 2.83 6.92 -2.91 -0.02 2.81 16 31 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.40 13.38 6.89 -92.71 -0.64 12.74 16 35 H 0.39 20.28 7.91 -92.71 -0.73 19.55 16 36 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 37 H 0.13 2.80 8.04 -2.91 -0.02 2.78 16 38 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -69.73 323.70 3.07 -66.66 By element: Atomic # 1 Polarization: 38.99 SS G_CDS: -0.31 Total: 38.68 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 5.15 Total: 3.70 kcal Atomic # 7 Polarization: -112.94 SS G_CDS: -3.74 Total: -116.68 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -0.06 Total: -38.83 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -69.73 3.07 -66.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264080.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.721 kcal (2) G-P(sol) polarization free energy of solvation -69.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds