Wall clock time and date at job start Mon Mar 30 2020 06:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47134 * 2 1 4 4 H 1.08994 * 109.47583 * 305.00542 * 3 2 1 5 5 C 1.53001 * 109.46796 * 65.00085 * 3 2 1 6 6 C 1.50692 * 109.47241 * 184.99832 * 3 2 1 7 7 C 1.38132 * 120.04152 * 294.98870 * 6 3 2 8 8 C 1.38255 * 120.07453 * 179.97438 * 7 6 3 9 9 C 1.38307 * 120.14414 * 0.02562 * 8 7 6 10 10 C 1.38096 * 120.06910 * 0.02562 * 9 8 7 11 11 C 1.38865 * 120.03237 * 114.71187 * 6 3 2 12 12 N 1.39899 * 120.07184 * 359.97438 * 11 6 3 13 13 C 1.34775 * 120.00422 * 154.05888 * 12 11 6 14 14 O 1.21594 * 119.99335 * 3.93857 * 13 12 11 15 15 N 1.34779 * 120.00698 * 183.94062 * 13 12 11 16 16 C 1.37160 * 120.00159 * 180.02562 * 15 13 12 17 17 H 1.08006 * 120.00367 * 0.02562 * 16 15 13 18 18 C 1.38883 * 119.99921 * 179.97438 * 16 15 13 19 19 N 1.31466 * 120.00025 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00172 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47262 * 59.99360 * 20 18 16 22 22 H 1.48496 * 109.47512 * 180.02562 * 20 18 16 23 23 H 1.48511 * 109.46753 * 300.00002 * 20 18 16 24 24 H 1.08998 * 109.47301 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47155 * 299.99906 * 1 2 3 26 26 H 1.09004 * 109.47455 * 59.99560 * 1 2 3 27 27 H 1.09003 * 109.46569 * 240.00537 * 2 1 3 28 28 H 1.09000 * 109.47017 * 120.00284 * 2 1 3 29 29 H 1.09002 * 109.47014 * 59.99870 * 5 3 2 30 30 H 1.08998 * 109.46921 * 179.97438 * 5 3 2 31 31 H 1.08997 * 109.47528 * 299.99916 * 5 3 2 32 32 H 1.08003 * 119.96297 * 359.97438 * 7 6 3 33 33 H 1.08003 * 119.93123 * 179.97438 * 8 7 6 34 34 H 1.08001 * 119.96570 * 180.02562 * 9 8 7 35 35 H 1.07997 * 120.03308 * 179.97438 * 10 9 8 36 36 H 0.97007 * 120.00523 * 334.06241 * 12 11 6 37 37 H 0.96996 * 119.99492 * 359.97438 * 15 13 12 38 38 H 0.97000 * 120.00369 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6352 2.1265 1.3074 6 6 3.5418 1.4443 -0.1238 7 6 4.3195 0.9088 0.8844 8 6 5.6974 0.9096 0.7713 9 6 6.3018 1.4468 -0.3507 10 6 5.5302 1.9847 -1.3617 11 6 4.1454 1.9793 -1.2542 12 7 3.3605 2.5168 -2.2800 13 6 3.8683 3.4669 -3.0899 14 8 5.0305 3.8057 -2.9752 15 7 3.0881 4.0414 -4.0268 16 6 3.6052 5.0080 -4.8512 17 1 4.6377 5.3084 -4.7500 18 6 2.8013 5.5996 -5.8170 19 7 1.5450 5.2329 -5.9412 20 14 3.5056 6.9155 -6.9404 21 1 4.6397 6.3502 -7.7146 22 1 2.4517 7.3839 -7.8757 23 1 3.9854 8.0589 -6.1232 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 2.0699 1.5874 2.1492 30 1 1.9989 3.1540 1.3076 31 1 0.5489 2.1252 1.3970 32 1 3.8505 0.4889 1.7621 33 1 6.3032 0.4906 1.5612 34 1 7.3785 1.4456 -0.4362 35 1 6.0028 2.4044 -2.2374 36 1 2.4507 2.2057 -2.4085 37 1 2.1612 3.7708 -4.1184 38 1 0.9836 5.6458 -6.6159 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217264520.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:57 Heat of formation + Delta-G solvation = -15.622542 kcal Electronic energy + Delta-G solvation = -19574.256102 eV Core-core repulsion = 16609.216597 eV Total energy + Delta-G solvation = -2965.039505 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.12546 -38.26420 -35.93154 -34.45101 -33.65297 -31.33597 -30.86787 -29.03413 -28.32166 -24.96970 -24.70555 -22.75526 -21.67088 -19.91380 -19.57420 -18.06586 -17.72097 -16.48352 -15.55892 -15.14184 -14.62799 -14.47706 -14.27098 -13.91147 -13.65284 -13.48682 -13.39107 -12.89076 -12.76234 -12.23022 -12.01521 -11.75140 -11.67354 -11.52840 -11.21599 -11.11045 -10.73061 -10.51923 -10.45631 -10.36380 -10.23202 -9.98255 -9.50212 -8.74413 -8.31022 -8.06408 -7.41711 -6.41194 -3.83280 1.73872 1.87324 3.22261 3.25891 3.28611 3.66001 4.01330 4.28667 4.36780 4.76593 4.85720 5.06365 5.27039 5.31217 5.40375 5.43237 5.44669 5.54773 5.59605 5.66191 5.79284 5.90415 5.92090 6.00619 6.03470 6.13011 6.18130 6.34464 6.37538 6.49672 6.77892 6.89008 6.99478 7.13136 7.49824 7.59090 7.65730 8.28567 8.63899 9.14329 9.52456 10.01045 10.77545 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.021943 B = 0.005210 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.753553 B = 5373.413272 C = 6380.803969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C -0.049 4.049 4 H 0.073 0.927 5 C -0.141 4.141 6 C -0.129 4.129 7 C -0.096 4.096 8 C -0.160 4.160 9 C -0.106 4.106 10 C -0.138 4.138 11 C 0.197 3.803 12 N -0.692 5.692 13 C 0.645 3.355 14 O -0.608 6.608 15 N -0.574 5.574 16 C -0.290 4.290 17 H 0.104 0.896 18 C 0.021 3.979 19 N -0.907 5.907 20 Si 0.934 3.066 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.274 1.274 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.159 0.841 36 H 0.397 0.603 37 H 0.392 0.608 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.316 -9.921 12.019 15.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.152 4.152 3 C -0.067 4.067 4 H 0.091 0.909 5 C -0.199 4.199 6 C -0.132 4.132 7 C -0.115 4.115 8 C -0.179 4.179 9 C -0.125 4.125 10 C -0.158 4.158 11 C 0.098 3.902 12 N -0.338 5.338 13 C 0.347 3.653 14 O -0.491 6.491 15 N -0.213 5.213 16 C -0.419 4.419 17 H 0.122 0.878 18 C -0.180 4.180 19 N -0.548 5.548 20 Si 0.761 3.239 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.134 0.866 35 H 0.176 0.824 36 H 0.233 0.767 37 H 0.226 0.774 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.511 -9.430 11.832 15.139 hybrid contribution -0.714 0.400 -0.694 1.073 sum -1.225 -9.030 11.138 14.391 Atomic orbital electron populations 1.21852 0.95911 1.01406 1.02061 1.21586 0.95507 0.95890 1.02190 1.20022 0.91290 0.96369 0.99061 0.90853 1.21858 1.00850 1.00698 0.96460 1.19458 0.95058 1.05001 0.93702 1.20577 0.93374 0.99787 0.97732 1.20920 0.94578 1.03638 0.98762 1.21039 0.99436 0.98022 0.93954 1.21862 0.92363 0.99920 1.01689 1.17476 0.90813 0.94611 0.87280 1.42794 1.16633 1.41555 1.32775 1.15888 0.85884 0.81580 0.81960 1.90650 1.16151 1.67892 1.74360 1.41029 1.12412 1.37018 1.30889 1.19547 0.98058 1.13513 1.10825 0.87811 1.25207 0.95367 0.99147 0.98327 1.69623 1.05885 1.43714 1.35621 0.85869 0.78174 0.80434 0.79430 1.19928 1.20999 1.19942 0.92958 0.92515 0.92573 0.91940 0.91909 0.92636 0.92555 0.92430 0.86659 0.86986 0.86564 0.82395 0.76740 0.77447 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.67 37.16 0.36 -1.09 16 2 C -0.11 -1.21 5.20 -26.73 -0.14 -1.35 16 3 C -0.05 -0.61 2.44 -91.77 -0.22 -0.83 16 4 H 0.07 0.97 6.00 -51.93 -0.31 0.66 16 5 C -0.14 -1.59 8.70 37.16 0.32 -1.27 16 6 C -0.13 -1.92 4.80 -104.43 -0.50 -2.42 16 7 C -0.10 -1.29 8.81 -39.61 -0.35 -1.64 16 8 C -0.16 -2.18 10.04 -39.55 -0.40 -2.58 16 9 C -0.11 -1.64 10.04 -39.61 -0.40 -2.04 16 10 C -0.14 -2.60 8.79 -39.39 -0.35 -2.95 16 11 C 0.20 3.58 6.43 -83.70 -0.54 3.04 16 12 N -0.69 -13.28 5.04 -14.23 -0.07 -13.35 16 13 C 0.65 15.50 8.40 -86.92 -0.73 14.77 16 14 O -0.61 -16.34 12.84 5.28 0.07 -16.27 16 15 N -0.57 -14.52 5.29 -15.34 -0.08 -14.60 16 16 C -0.29 -8.02 9.68 -14.93 -0.14 -8.17 16 17 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 18 C 0.02 0.55 5.50 -17.47 -0.10 0.45 16 19 N -0.91 -24.59 13.05 55.49 0.72 -23.86 16 20 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.49 6.56 -51.93 -0.34 0.15 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.62 7.88 -51.93 -0.41 0.21 16 29 H 0.05 0.56 7.13 -51.93 -0.37 0.19 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.57 6.56 -51.93 -0.34 0.23 16 32 H 0.12 1.27 7.17 -52.48 -0.38 0.89 16 33 H 0.11 1.23 8.06 -52.48 -0.42 0.81 16 34 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 35 H 0.16 3.44 5.53 -52.49 -0.29 3.15 16 36 H 0.40 6.54 6.96 -40.82 -0.28 6.25 16 37 H 0.39 9.45 7.92 -40.82 -0.32 9.13 16 38 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 311.48 15.07 4.69 4.69 Total: -1.00 -30.03 311.48 -7.97 -38.00 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -5.09 Total: 15.46 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -3.18 Total: -6.07 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: 0.57 Total: -51.81 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: 0.07 Total: -16.27 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.03 -7.97 -38.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264520.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.376 kcal (2) G-P(sol) polarization free energy of solvation -30.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds