Wall clock time and date at job start Mon Mar 30 2020 06:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47134 * 2 1 4 4 H 1.08994 * 109.47583 * 305.00542 * 3 2 1 5 5 C 1.53001 * 109.46796 * 65.00085 * 3 2 1 6 6 C 1.50692 * 109.47241 * 184.99832 * 3 2 1 7 7 C 1.38132 * 120.04152 * 294.98870 * 6 3 2 8 8 C 1.38255 * 120.07453 * 179.97438 * 7 6 3 9 9 C 1.38307 * 120.14414 * 0.02562 * 8 7 6 10 10 C 1.38096 * 120.06910 * 0.02562 * 9 8 7 11 11 C 1.38865 * 120.03237 * 114.71187 * 6 3 2 12 12 N 1.39899 * 120.07184 * 359.97438 * 11 6 3 13 13 C 1.34775 * 120.00422 * 154.05888 * 12 11 6 14 14 O 1.21594 * 119.99335 * 3.93857 * 13 12 11 15 15 N 1.34779 * 120.00698 * 183.94062 * 13 12 11 16 16 C 1.37160 * 120.00159 * 180.02562 * 15 13 12 17 17 H 1.08006 * 120.00367 * 0.02562 * 16 15 13 18 18 C 1.38883 * 119.99921 * 179.97438 * 16 15 13 19 19 N 1.31466 * 120.00025 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00172 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47262 * 59.99360 * 20 18 16 22 22 H 1.48496 * 109.47512 * 180.02562 * 20 18 16 23 23 H 1.48511 * 109.46753 * 300.00002 * 20 18 16 24 24 H 1.08998 * 109.47301 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47155 * 299.99906 * 1 2 3 26 26 H 1.09004 * 109.47455 * 59.99560 * 1 2 3 27 27 H 1.09003 * 109.46569 * 240.00537 * 2 1 3 28 28 H 1.09000 * 109.47017 * 120.00284 * 2 1 3 29 29 H 1.09002 * 109.47014 * 59.99870 * 5 3 2 30 30 H 1.08998 * 109.46921 * 179.97438 * 5 3 2 31 31 H 1.08997 * 109.47528 * 299.99916 * 5 3 2 32 32 H 1.08003 * 119.96297 * 359.97438 * 7 6 3 33 33 H 1.08003 * 119.93123 * 179.97438 * 8 7 6 34 34 H 1.08001 * 119.96570 * 180.02562 * 9 8 7 35 35 H 1.07997 * 120.03308 * 179.97438 * 10 9 8 36 36 H 0.97007 * 120.00523 * 334.06241 * 12 11 6 37 37 H 0.96996 * 119.99492 * 359.97438 * 15 13 12 38 38 H 0.97000 * 120.00369 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6352 2.1265 1.3074 6 6 3.5418 1.4443 -0.1238 7 6 4.3195 0.9088 0.8844 8 6 5.6974 0.9096 0.7713 9 6 6.3018 1.4468 -0.3507 10 6 5.5302 1.9847 -1.3617 11 6 4.1454 1.9793 -1.2542 12 7 3.3605 2.5168 -2.2800 13 6 3.8683 3.4669 -3.0899 14 8 5.0305 3.8057 -2.9752 15 7 3.0881 4.0414 -4.0268 16 6 3.6052 5.0080 -4.8512 17 1 4.6377 5.3084 -4.7500 18 6 2.8013 5.5996 -5.8170 19 7 1.5450 5.2329 -5.9412 20 14 3.5056 6.9155 -6.9404 21 1 4.6397 6.3502 -7.7146 22 1 2.4517 7.3839 -7.8757 23 1 3.9854 8.0589 -6.1232 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 2.0699 1.5874 2.1492 30 1 1.9989 3.1540 1.3076 31 1 0.5489 2.1252 1.3970 32 1 3.8505 0.4889 1.7621 33 1 6.3032 0.4906 1.5612 34 1 7.3785 1.4456 -0.4362 35 1 6.0028 2.4044 -2.2374 36 1 2.4507 2.2057 -2.4085 37 1 2.1612 3.7708 -4.1184 38 1 0.9836 5.6458 -6.6159 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217264520.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:56 Heat of formation + Delta-G solvation = -33.386720 kcal Electronic energy + Delta-G solvation = -19575.026415 eV Core-core repulsion = 16609.216597 eV Total energy + Delta-G solvation = -2965.809817 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.62295 -39.83499 -36.97027 -36.25887 -35.42910 -33.32795 -31.88894 -30.36011 -29.40375 -26.89019 -25.70202 -24.04936 -22.90665 -21.61543 -20.61839 -20.04225 -19.32303 -18.03306 -16.95952 -16.50641 -16.32983 -15.93374 -15.60509 -15.30081 -15.12952 -14.90896 -14.58444 -14.36792 -13.82879 -13.48443 -13.26157 -12.98625 -12.95307 -12.77696 -12.61475 -12.45606 -12.24208 -12.11857 -11.74254 -11.60367 -11.52034 -11.35878 -11.25059 -10.57964 -10.09616 -9.55057 -8.82431 -8.45811 -5.94920 0.50625 0.60193 1.41546 1.43346 1.52486 2.01162 2.25796 2.44504 2.97944 3.26361 3.73446 3.82231 3.89364 4.19414 4.28396 4.33610 4.42635 4.54295 4.62645 4.70382 4.78630 4.82222 4.88541 5.06997 5.14438 5.19384 5.24072 5.27098 5.37937 5.42892 5.47779 5.57215 5.64750 5.74570 5.79378 5.82100 6.29396 6.39229 6.73743 7.09302 7.58485 8.07249 8.72837 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.021943 B = 0.005210 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.753553 B = 5373.413272 C = 6380.803969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.108 4.108 3 C -0.051 4.051 4 H 0.058 0.942 5 C -0.138 4.138 6 C -0.119 4.119 7 C -0.092 4.092 8 C -0.144 4.144 9 C -0.112 4.112 10 C -0.169 4.169 11 C 0.158 3.842 12 N -0.679 5.679 13 C 0.647 3.353 14 O -0.642 6.642 15 N -0.583 5.583 16 C -0.322 4.322 17 H 0.082 0.918 18 C -0.015 4.015 19 N -0.926 5.926 20 Si 0.998 3.002 21 H -0.271 1.271 22 H -0.271 1.271 23 H -0.272 1.272 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.036 0.964 31 H 0.072 0.928 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.133 0.867 35 H 0.119 0.881 36 H 0.409 0.591 37 H 0.395 0.605 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.954 -11.109 14.118 18.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.146 4.146 3 C -0.069 4.069 4 H 0.076 0.924 5 C -0.195 4.195 6 C -0.122 4.122 7 C -0.110 4.110 8 C -0.163 4.163 9 C -0.131 4.131 10 C -0.190 4.190 11 C 0.062 3.938 12 N -0.326 5.326 13 C 0.349 3.651 14 O -0.527 6.527 15 N -0.224 5.224 16 C -0.451 4.451 17 H 0.100 0.900 18 C -0.214 4.214 19 N -0.568 5.568 20 Si 0.821 3.179 21 H -0.197 1.197 22 H -0.195 1.195 23 H -0.197 1.197 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.171 0.829 33 H 0.169 0.831 34 H 0.151 0.849 35 H 0.136 0.864 36 H 0.247 0.753 37 H 0.229 0.771 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.169 -10.664 13.971 17.615 hybrid contribution -0.477 0.656 -1.204 1.452 sum -1.646 -10.009 12.767 16.306 Atomic orbital electron populations 1.21843 0.94872 1.02225 1.02145 1.21541 0.96365 0.94199 1.02473 1.20096 0.89560 0.97868 0.99403 0.92390 1.21849 1.02019 0.99584 0.96098 1.19769 0.96651 1.03268 0.92515 1.21044 0.93394 0.98472 0.98100 1.21366 0.95177 1.01457 0.98336 1.21250 1.00232 0.97774 0.93832 1.21672 0.93280 1.02119 1.01892 1.17784 0.90712 0.96891 0.88430 1.42476 1.17221 1.40482 1.32432 1.16103 0.85328 0.81823 0.81873 1.90637 1.17617 1.69138 1.75267 1.40973 1.12582 1.37352 1.31474 1.19538 0.97683 1.15276 1.12629 0.89965 1.26011 0.95626 1.00727 0.99035 1.69695 1.06603 1.44400 1.36057 0.84923 0.77782 0.77651 0.77553 1.19663 1.19522 1.19727 0.91792 0.91513 0.93458 0.93010 0.90237 0.90736 0.94432 0.90873 0.82919 0.83129 0.84903 0.86377 0.75346 0.77091 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.67 71.98 0.70 -1.77 16 2 C -0.11 -2.01 5.20 30.59 0.16 -1.85 16 3 C -0.05 -1.17 2.44 -11.54 -0.03 -1.20 16 4 H 0.06 1.52 6.00 -2.39 -0.01 1.50 16 5 C -0.14 -2.73 8.70 71.98 0.63 -2.11 16 6 C -0.12 -3.37 4.80 -19.74 -0.09 -3.46 16 7 C -0.09 -2.14 8.81 22.25 0.20 -1.94 16 8 C -0.14 -3.45 10.04 22.29 0.22 -3.23 16 9 C -0.11 -3.40 10.04 22.25 0.22 -3.18 16 10 C -0.17 -6.64 8.79 22.39 0.20 -6.44 16 11 C 0.16 5.89 6.43 38.16 0.25 6.13 16 12 N -0.68 -27.29 5.04 -317.18 -1.60 -28.89 16 13 C 0.65 32.89 8.40 179.05 1.50 34.39 16 14 O -0.64 -36.81 12.84 -4.01 -0.05 -36.86 16 15 N -0.58 -30.95 5.29 -320.71 -1.70 -32.65 16 16 C -0.32 -18.55 9.68 84.01 0.81 -17.74 16 17 H 0.08 5.00 7.16 -2.91 -0.02 4.98 16 18 C -0.01 -0.80 5.50 84.90 0.47 -0.34 16 19 N -0.93 -50.65 13.05 21.65 0.28 -50.37 16 20 Si 1.00 43.44 29.55 68.60 2.03 45.47 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 23 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 24 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.07 0.94 6.56 -2.39 -0.02 0.93 16 26 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.08 1.22 7.88 -2.39 -0.02 1.21 16 29 H 0.07 1.18 7.13 -2.39 -0.02 1.17 16 30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 1.22 6.56 -2.39 -0.02 1.21 16 32 H 0.15 2.47 7.17 -2.91 -0.02 2.45 16 33 H 0.15 2.50 8.06 -2.91 -0.02 2.47 16 34 H 0.13 3.45 8.06 -2.91 -0.02 3.42 16 35 H 0.12 5.58 5.53 -2.91 -0.02 5.57 16 36 H 0.41 14.06 6.96 -92.70 -0.65 13.42 16 37 H 0.40 19.90 7.92 -92.71 -0.73 19.17 16 38 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -67.72 311.48 3.90 -63.82 By element: Atomic # 1 Polarization: 42.49 SS G_CDS: -0.29 Total: 42.19 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 5.23 Total: -2.73 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -3.01 Total: -111.90 kcal Atomic # 8 Polarization: -36.81 SS G_CDS: -0.05 Total: -36.86 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -67.72 3.90 -63.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264520.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.436 kcal (2) G-P(sol) polarization free energy of solvation -67.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds