Wall clock time and date at job start Mon Mar 30 2020 06:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 C 1.34781 * 119.99894 * 240.00308 * 12 2 1 15 15 O 1.21589 * 120.00201 * 359.97438 * 14 12 2 16 16 N 1.34779 * 120.00042 * 180.02562 * 14 12 2 17 17 C 1.46495 * 120.00130 * 180.02562 * 16 14 12 18 18 C 1.50698 * 109.47084 * 179.97438 * 17 16 14 19 19 C 1.38230 * 120.00257 * 269.72661 * 18 17 16 20 20 C 1.38237 * 120.00538 * 179.76769 * 19 18 17 21 21 C 1.38235 * 119.99565 * 0.50403 * 20 19 18 22 22 C 1.38240 * 120.00073 * 359.74691 * 21 20 19 23 23 C 1.38235 * 119.99982 * 89.99835 * 18 17 16 24 24 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 25 25 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 29 29 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 30 30 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 31 31 H 0.97000 * 120.00084 * 359.97438 * 16 14 12 32 32 H 1.09002 * 109.46881 * 299.99554 * 17 16 14 33 33 H 1.09000 * 109.47512 * 59.99804 * 17 16 14 34 34 H 1.08005 * 120.00270 * 359.97438 * 19 18 17 35 35 H 1.08000 * 120.00801 * 180.23132 * 20 19 18 36 36 H 1.07997 * 120.00058 * 179.72575 * 21 20 19 37 37 H 1.08002 * 120.00005 * 179.97438 * 22 21 20 38 38 H 1.07995 * 120.00112 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 3.0872 1.1285 1.8907 16 7 3.2428 -0.6708 3.1836 17 6 4.0845 0.0414 4.1482 18 6 4.4486 -0.8865 5.2785 19 6 3.6410 -0.9628 6.3976 20 6 3.9724 -1.8175 7.4324 21 6 5.1171 -2.5882 7.3524 22 6 5.9277 -2.5082 6.2354 23 6 5.5934 -1.6573 5.1984 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.7088 1.1611 -3.4845 28 1 2.4158 -2.7376 0.9718 29 1 1.6238 -2.2851 2.5003 30 1 0.6905 -2.3002 0.9847 31 1 3.0085 -1.5995 3.3372 32 1 4.9926 0.3856 3.6534 33 1 3.5390 0.8982 4.5435 34 1 2.7491 -0.3571 6.4623 35 1 3.3394 -1.8799 8.3052 36 1 5.3785 -3.2527 8.1626 37 1 6.8223 -3.1100 6.1731 38 1 6.2270 -1.5941 4.3262 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228121599.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:45 Heat of formation + Delta-G solvation = 0.606154 kcal Electronic energy + Delta-G solvation = -19280.154406 eV Core-core repulsion = 16315.818630 eV Total energy + Delta-G solvation = -2964.335776 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.75667 -38.95498 -35.53692 -34.42500 -32.80242 -31.19015 -31.06550 -29.08951 -26.30238 -25.58223 -25.10724 -22.72907 -21.66150 -20.95225 -19.07230 -17.53719 -16.75780 -16.30688 -15.64583 -15.48188 -15.16714 -14.65897 -14.54619 -13.84066 -13.59059 -13.27875 -12.98982 -12.84876 -12.63792 -12.50888 -12.02521 -11.52919 -11.47267 -11.17961 -11.16653 -10.99689 -10.77673 -10.61833 -10.20673 -10.09986 -9.39528 -9.09829 -9.08421 -8.89919 -8.62647 -8.37149 -7.44590 -6.01358 -4.08794 1.09872 1.22846 3.31424 3.33703 3.36358 3.40360 3.80391 4.02287 4.42488 4.62090 4.71910 4.77368 4.83116 4.96213 5.29266 5.29617 5.33054 5.64149 5.68198 5.72326 5.91245 5.93899 6.09304 6.26269 6.31376 6.32301 6.49966 6.78912 6.81271 6.87164 6.93664 7.10014 7.25951 7.57565 7.77443 7.95067 8.15890 8.30029 8.82517 8.93460 9.40098 9.59468 11.03896 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.034729 B = 0.004024 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.048475 B = 6955.916036 C = 7205.537151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.273 3.727 3 H 0.064 0.936 4 C -0.524 4.524 5 H 0.057 0.943 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.899 3.101 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.277 1.277 12 N -0.610 5.610 13 C 0.091 3.909 14 C 0.699 3.301 15 O -0.597 6.597 16 N -0.754 5.754 17 C 0.180 3.820 18 C -0.100 4.100 19 C -0.101 4.101 20 C -0.124 4.124 21 C -0.118 4.118 22 C -0.124 4.124 23 C -0.101 4.101 24 H 0.094 0.906 25 H 0.029 0.971 26 H 0.011 0.989 27 H 0.263 0.737 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.392 0.608 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.157 -7.985 17.714 20.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.172 3.828 3 H 0.082 0.918 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.203 1.203 11 H -0.203 1.203 12 N -0.345 5.345 13 C -0.053 4.053 14 C 0.400 3.600 15 O -0.476 6.476 16 N -0.413 5.413 17 C 0.056 3.944 18 C -0.100 4.100 19 C -0.120 4.120 20 C -0.142 4.142 21 C -0.137 4.137 22 C -0.142 4.142 23 C -0.119 4.119 24 H 0.112 0.888 25 H 0.048 0.952 26 H 0.030 0.970 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.227 0.773 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.260 -6.978 17.371 19.445 hybrid contribution 0.213 -1.090 -0.747 1.338 sum 5.473 -8.067 16.623 19.271 Atomic orbital electron populations 1.22111 0.98446 0.99230 1.00791 1.18828 0.90502 0.94312 0.79131 0.91813 1.21327 1.31631 1.12917 0.90398 0.92431 1.24890 0.95032 0.95017 0.98894 1.69875 1.36466 1.22658 1.23759 0.86557 0.79218 0.79534 0.82053 1.21207 1.20302 1.20306 1.47521 1.51507 1.11411 1.24067 1.21429 1.01698 0.83750 0.98431 1.15985 0.79473 0.84920 0.79627 1.90860 1.63512 1.15839 1.77423 1.45323 1.56628 1.15478 1.23828 1.19913 0.95142 0.92786 0.86605 1.20034 0.95672 0.98456 0.95882 1.21158 0.99173 0.98425 0.93248 1.21159 0.97348 0.96865 0.98853 1.21186 0.95088 0.99297 0.98091 1.21169 0.99886 0.99096 0.94023 1.21178 0.96542 0.95478 0.98713 0.88799 0.95225 0.96999 0.92694 0.93620 0.93776 0.90766 0.77289 0.91108 0.91197 0.85779 0.86031 0.86192 0.86007 0.85709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 8.95 37.16 0.33 -3.27 16 2 C 0.27 7.18 2.64 -69.09 -0.18 7.00 16 3 H 0.06 1.95 6.90 -51.92 -0.36 1.59 16 4 C -0.52 -14.49 8.37 -34.44 -0.29 -14.78 16 5 H 0.06 1.57 7.65 -52.49 -0.40 1.17 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.57 11.32 55.43 0.63 -24.94 16 8 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 9 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.61 -13.54 2.75 -181.01 -0.50 -14.04 16 13 C 0.09 1.58 9.44 59.85 0.57 2.15 16 14 C 0.70 15.32 8.28 -86.91 -0.72 14.60 16 15 O -0.60 -15.63 15.67 5.29 0.08 -15.54 16 16 N -0.75 -12.35 5.41 -66.42 -0.36 -12.71 16 17 C 0.18 2.56 5.80 -5.20 -0.03 2.53 16 18 C -0.10 -1.15 5.25 -104.63 -0.55 -1.70 16 19 C -0.10 -1.05 9.70 -39.58 -0.38 -1.43 16 20 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 21 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 22 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 23 C -0.10 -1.06 9.70 -39.58 -0.38 -1.45 16 24 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 25 H 0.03 0.66 6.66 -51.93 -0.35 0.32 16 26 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.04 0.61 6.36 -51.93 -0.33 0.28 16 30 H 0.07 1.30 6.43 -51.93 -0.33 0.96 16 31 H 0.39 5.53 6.19 -40.82 -0.25 5.28 16 32 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 33 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 34 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 35 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 316.90 15.07 4.78 4.78 Total: -1.00 -32.38 316.90 -8.59 -40.97 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -5.27 Total: 4.25 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -2.93 Total: 0.88 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: -0.23 Total: -51.68 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: 0.08 Total: -15.54 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.38 -8.59 -40.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228121599.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.578 kcal (2) G-P(sol) polarization free energy of solvation -32.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds