Wall clock time and date at job start Mon Mar 30 2020 06:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 C 1.34781 * 119.99894 * 240.00308 * 12 2 1 15 15 O 1.21589 * 120.00201 * 359.97438 * 14 12 2 16 16 N 1.34779 * 120.00042 * 180.02562 * 14 12 2 17 17 C 1.46495 * 120.00130 * 180.02562 * 16 14 12 18 18 C 1.50698 * 109.47084 * 179.97438 * 17 16 14 19 19 C 1.38230 * 120.00257 * 269.72661 * 18 17 16 20 20 C 1.38237 * 120.00538 * 179.76769 * 19 18 17 21 21 C 1.38235 * 119.99565 * 0.50403 * 20 19 18 22 22 C 1.38240 * 120.00073 * 359.74691 * 21 20 19 23 23 C 1.38235 * 119.99982 * 89.99835 * 18 17 16 24 24 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 25 25 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 29 29 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 30 30 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 31 31 H 0.97000 * 120.00084 * 359.97438 * 16 14 12 32 32 H 1.09002 * 109.46881 * 299.99554 * 17 16 14 33 33 H 1.09000 * 109.47512 * 59.99804 * 17 16 14 34 34 H 1.08005 * 120.00270 * 359.97438 * 19 18 17 35 35 H 1.08000 * 120.00801 * 180.23132 * 20 19 18 36 36 H 1.07997 * 120.00058 * 179.72575 * 21 20 19 37 37 H 1.08002 * 120.00005 * 179.97438 * 22 21 20 38 38 H 1.07995 * 120.00112 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 3.0872 1.1285 1.8907 16 7 3.2428 -0.6708 3.1836 17 6 4.0845 0.0414 4.1482 18 6 4.4486 -0.8865 5.2785 19 6 3.6410 -0.9628 6.3976 20 6 3.9724 -1.8175 7.4324 21 6 5.1171 -2.5882 7.3524 22 6 5.9277 -2.5082 6.2354 23 6 5.5934 -1.6573 5.1984 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.7088 1.1611 -3.4845 28 1 2.4158 -2.7376 0.9718 29 1 1.6238 -2.2851 2.5003 30 1 0.6905 -2.3002 0.9847 31 1 3.0085 -1.5995 3.3372 32 1 4.9926 0.3856 3.6534 33 1 3.5390 0.8982 4.5435 34 1 2.7491 -0.3571 6.4623 35 1 3.3394 -1.8799 8.3052 36 1 5.3785 -3.2527 8.1626 37 1 6.8223 -3.1100 6.1731 38 1 6.2270 -1.5941 4.3262 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228121599.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:45 Heat of formation + Delta-G solvation = -19.358168 kcal Electronic energy + Delta-G solvation = -19281.020124 eV Core-core repulsion = 16315.818630 eV Total energy + Delta-G solvation = -2965.201494 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.17201 -40.02971 -37.30027 -35.92467 -34.72232 -32.43081 -31.78477 -30.85408 -27.74817 -27.29270 -26.77809 -23.45491 -23.16308 -22.16579 -20.76316 -19.06713 -18.40441 -17.57633 -17.34323 -16.70343 -16.47155 -15.99778 -15.89174 -15.36624 -14.91864 -14.48387 -14.32804 -14.20395 -13.84627 -13.52661 -13.46605 -13.41735 -13.04015 -12.89840 -12.69403 -12.60240 -12.15699 -12.10700 -11.96816 -11.90361 -11.20385 -11.08556 -10.50260 -10.16430 -9.81846 -9.76562 -9.20440 -8.11954 -6.28653 0.31040 0.50451 1.42480 1.45193 1.52596 1.95639 2.28846 2.44611 2.88727 3.15335 3.30256 3.68889 3.94984 4.16877 4.31382 4.35477 4.39374 4.58742 4.62691 4.70178 4.77606 4.79361 4.90994 5.00973 5.06756 5.08738 5.17429 5.42073 5.52395 5.54430 5.58802 5.62466 5.68693 5.71005 6.01791 6.09936 6.18681 6.32157 6.79199 7.20627 7.39016 7.73928 8.92141 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.034729 B = 0.004024 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.048475 B = 6955.916036 C = 7205.537151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.277 3.723 3 H 0.008 0.992 4 C -0.539 4.539 5 H 0.059 0.941 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.966 3.034 9 H -0.283 1.283 10 H -0.278 1.278 11 H -0.262 1.262 12 N -0.618 5.618 13 C 0.088 3.912 14 C 0.691 3.309 15 O -0.649 6.649 16 N -0.730 5.730 17 C 0.182 3.818 18 C -0.112 4.112 19 C -0.110 4.110 20 C -0.125 4.125 21 C -0.114 4.114 22 C -0.126 4.126 23 C -0.112 4.112 24 H 0.069 0.931 25 H 0.048 0.952 26 H 0.019 0.981 27 H 0.265 0.735 28 H 0.052 0.948 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.406 0.594 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.127 0.873 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.591 -10.748 19.233 22.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.175 3.825 3 H 0.026 0.974 4 C -0.578 4.578 5 H 0.077 0.923 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.791 3.209 9 H -0.208 1.208 10 H -0.204 1.204 11 H -0.187 1.187 12 N -0.352 5.352 13 C -0.054 4.054 14 C 0.392 3.608 15 O -0.532 6.532 16 N -0.389 5.389 17 C 0.058 3.942 18 C -0.113 4.113 19 C -0.128 4.128 20 C -0.143 4.143 21 C -0.132 4.132 22 C -0.144 4.144 23 C -0.130 4.130 24 H 0.088 0.912 25 H 0.067 0.933 26 H 0.038 0.962 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.244 0.756 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.145 0.855 35 H 0.163 0.837 36 H 0.166 0.834 37 H 0.161 0.839 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.695 -9.805 18.942 22.077 hybrid contribution 0.120 -0.234 -1.103 1.134 sum 5.815 -10.040 17.839 21.280 Atomic orbital electron populations 1.21892 0.97150 1.00120 0.99931 1.18430 0.91418 0.91900 0.80759 0.97386 1.21571 1.31895 1.13061 0.91240 0.92310 1.25745 0.95094 0.95668 1.01993 1.70021 1.37319 1.23900 1.24479 0.85495 0.78326 0.78994 0.78086 1.20825 1.20394 1.18652 1.47408 1.51615 1.13186 1.23019 1.21667 1.01801 0.80784 1.01185 1.16225 0.79430 0.84448 0.80651 1.90818 1.65308 1.18309 1.78768 1.45131 1.55601 1.15890 1.22260 1.19942 0.93944 0.93375 0.86904 1.19764 0.96951 0.99135 0.95445 1.21274 0.99227 0.98980 0.93330 1.21461 0.97787 0.96038 0.98998 1.21574 0.94351 0.98903 0.98405 1.21449 1.00697 0.98650 0.93589 1.21268 0.96318 0.95959 0.99494 0.91246 0.93286 0.96210 0.92619 0.92928 0.89855 0.90678 0.75610 0.92418 0.91965 0.85492 0.83694 0.83426 0.83902 0.85897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.56 8.95 71.98 0.64 -5.92 16 2 C 0.28 15.02 2.64 44.24 0.12 15.14 16 3 H 0.01 0.53 6.90 -2.38 -0.02 0.51 16 4 C -0.54 -30.15 8.37 25.60 0.21 -29.94 16 5 H 0.06 3.19 7.65 -2.91 -0.02 3.17 16 6 C 0.01 0.81 5.30 84.66 0.45 1.26 16 7 N -0.92 -53.94 11.32 21.45 0.24 -53.70 16 8 Si 0.97 43.76 29.54 68.60 2.03 45.78 16 9 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 12 N -0.62 -27.57 2.75 -844.85 -2.33 -29.89 16 13 C 0.09 2.90 9.44 127.77 1.21 4.11 16 14 C 0.69 30.94 8.28 179.05 1.48 32.43 16 15 O -0.65 -35.64 15.67 -4.00 -0.06 -35.70 16 16 N -0.73 -23.71 5.41 -482.30 -2.61 -26.32 16 17 C 0.18 5.25 5.80 85.63 0.50 5.74 16 18 C -0.11 -2.48 5.25 -19.87 -0.10 -2.58 16 19 C -0.11 -2.07 9.70 22.27 0.22 -1.85 16 20 C -0.13 -1.85 10.05 22.27 0.22 -1.62 16 21 C -0.11 -1.54 10.05 22.27 0.22 -1.32 16 22 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16 23 C -0.11 -2.20 9.70 22.27 0.22 -1.99 16 24 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16 25 H 0.05 2.18 6.66 -2.39 -0.02 2.17 16 26 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 28 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.08 2.05 6.36 -2.38 -0.02 2.04 16 30 H 0.07 2.47 6.43 -2.39 -0.02 2.45 16 31 H 0.41 10.77 6.19 -92.71 -0.57 10.19 16 32 H 0.06 1.80 8.09 -2.39 -0.02 1.78 16 33 H 0.06 1.88 8.08 -2.39 -0.02 1.86 16 34 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 35 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 36 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 37 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 38 H 0.12 2.39 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -72.51 316.90 3.36 -69.15 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.48 Total: 18.95 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: 5.61 Total: 11.74 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -4.69 Total: -109.91 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -0.06 Total: -35.70 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -72.51 3.36 -69.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228121599.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.787 kcal (2) G-P(sol) polarization free energy of solvation -72.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds