Wall clock time and date at job start Mon Mar 30 2020 07:00:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46492 * 109.46859 * 2 1
4 4 C 1.46502 * 120.00464 * 90.00041 * 3 2 1
5 5 C 1.50701 * 109.47028 * 270.00026 * 4 3 2
6 6 H 1.08004 * 120.00160 * 359.71840 * 5 4 3
7 7 C 1.37881 * 120.00029 * 179.97438 * 5 4 3
8 8 N 1.31506 * 119.99966 * 359.71963 * 7 5 4
9 9 Si 1.86806 * 119.99888 * 179.72343 * 7 5 4
10 10 H 1.48503 * 109.46757 * 89.99680 * 9 7 5
11 11 H 1.48494 * 109.46853 * 209.99843 * 9 7 5
12 12 H 1.48503 * 109.46980 * 330.00010 * 9 7 5
13 13 C 1.40011 * 119.99908 * 269.99451 * 3 2 1
14 14 C 1.39254 * 119.88060 * 179.97438 * 13 3 2
15 15 C 1.37899 * 120.42457 * 179.97438 * 14 13 3
16 16 C 1.38918 * 120.17474 * 0.02786 * 15 14 13
17 17 N 1.38958 * 120.12481 * 179.97438 * 16 15 14
18 18 C 1.40586 * 119.75215 * 359.97438 * 16 15 14
19 19 C 1.46661 * 120.21029 * 180.02562 * 18 16 15
20 20 C 1.50690 * 120.00412 * 185.45224 * 19 18 16
21 21 O 1.21319 * 119.99459 * 5.45045 * 19 18 16
22 22 C 1.38224 * 119.87918 * 359.73171 * 13 3 2
23 23 H 1.09010 * 109.47153 * 180.02562 * 1 2 3
24 24 H 1.08998 * 109.47666 * 300.00153 * 1 2 3
25 25 H 1.08996 * 109.47259 * 60.00863 * 1 2 3
26 26 H 1.08993 * 109.47074 * 239.99472 * 2 1 3
27 27 H 1.09003 * 109.46966 * 119.99338 * 2 1 3
28 28 H 1.09000 * 109.47643 * 149.99883 * 4 3 2
29 29 H 1.09007 * 109.47110 * 29.99510 * 4 3 2
30 30 H 0.97001 * 120.00225 * 180.02562 * 8 7 5
31 31 H 1.08000 * 119.79061 * 0.02562 * 14 13 3
32 32 H 1.08002 * 119.91314 * 180.02562 * 15 14 13
33 33 H 0.96996 * 120.00204 * 354.47665 * 17 16 15
34 34 H 0.96996 * 119.99774 * 174.47200 * 17 16 15
35 35 H 1.09001 * 109.47240 * 59.99968 * 20 19 18
36 36 H 1.08996 * 109.47251 * 179.97438 * 20 19 18
37 37 H 1.09007 * 109.47217 * 299.99962 * 20 19 18
38 38 H 1.07991 * 120.08807 * 359.97438 * 22 13 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0182 1.3812 0.0000
4 6 2.2624 2.0719 1.2687
5 6 1.0066 2.7823 1.7037
6 1 0.1169 2.7287 1.0936
7 6 0.9948 3.5049 2.8779
8 7 2.0778 3.5698 3.6210
9 14 -0.5597 4.3919 3.4132
10 1 -1.3825 3.4851 4.2535
11 1 -0.1956 5.5991 4.1974
12 1 -1.3368 4.7962 2.2140
13 6 2.2517 2.0411 -1.2125
14 6 2.7153 3.3542 -1.2097
15 6 2.9495 4.0147 -2.3973
16 6 2.7236 3.3739 -3.6090
17 7 2.9594 4.0407 -4.8051
18 6 2.2555 2.0483 -3.6205
19 6 2.0142 1.3620 -4.8940
20 6 1.3972 -0.0128 -4.9039
21 8 2.3112 1.9012 -5.9394
22 6 2.0259 1.3852 -2.4081
23 1 -0.3634 -1.0278 0.0005
24 1 -0.3634 0.5138 0.8899
25 1 -0.3633 0.5137 -0.8900
26 1 1.8933 -0.5139 -0.8899
27 1 1.8933 -0.5137 0.8901
28 1 3.0643 2.7986 1.1384
29 1 2.5505 1.3452 2.0284
30 1 2.0695 4.0778 4.4472
31 1 2.8934 3.8583 -0.2713
32 1 3.3094 5.0330 -2.3854
33 1 3.2049 4.9790 -4.7972
34 1 2.8785 3.5677 -5.6481
35 1 0.4137 0.0269 -4.4357
36 1 1.2957 -0.3581 -5.9328
37 1 2.0356 -0.7016 -4.3504
38 1 1.6705 0.3655 -2.4075
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000228241352.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:00:17
Heat of formation + Delta-G solvation = -5.220983 kcal
Electronic energy + Delta-G solvation = -19772.029897 eV
Core-core repulsion = 16807.441437 eV
Total energy + Delta-G solvation = -2964.588459 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 262.142 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-39.91800 -38.24355 -36.21026 -33.49024 -32.70214 -31.75176 -29.96415 -29.13139
-27.88137 -25.87320 -23.73118 -22.29513 -22.22111 -20.43018 -19.06081 -17.10203
-16.61500 -16.28094 -15.94478 -14.96613 -14.82394 -14.69324 -14.57739 -13.99971
-13.75323 -13.36921 -12.81720 -12.68827 -12.42373 -12.23133 -12.07686 -11.96432
-11.72916 -11.46688 -11.35799 -10.98309 -10.88843 -10.59829 -10.44233 -10.32487
-9.86800 -9.52324 -9.31155 -8.50951 -8.45813 -8.07349 -6.25030 -5.85162
-4.15483 1.15729 2.29907 2.86139 3.25569 3.32999 3.37018 4.12637
4.35424 4.41928 4.43861 4.49315 5.19339 5.22600 5.26839 5.47332
5.52101 5.60122 5.81611 5.86493 5.89258 5.97010 6.04701 6.11054
6.22490 6.44286 6.48242 6.57848 6.74677 6.85672 6.94112 7.15401
7.25893 7.33895 7.71374 7.82751 7.97014 8.19290 8.32888 8.34239
8.55556 8.94819 9.51425 10.96511
Molecular weight = 262.14amu
Principal moments of inertia in cm(-1)
A = 0.023484 B = 0.005662 C = 0.005048
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1192.024169 B = 4944.248849 C = 5545.357994
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C 0.130 3.870
3 N -0.619 5.619
4 C 0.253 3.747
5 C -0.527 4.527
6 H 0.061 0.939
7 C 0.061 3.939
8 N -0.896 5.896
9 Si 0.892 3.108
10 H -0.281 1.281
11 H -0.286 1.286
12 H -0.274 1.274
13 C 0.178 3.822
14 C -0.088 4.088
15 C -0.175 4.175
16 C 0.217 3.783
17 N -0.872 5.872
18 C -0.226 4.226
19 C 0.407 3.593
20 C -0.196 4.196
21 O -0.494 6.494
22 C -0.135 4.135
23 H 0.046 0.954
24 H 0.071 0.929
25 H 0.049 0.951
26 H 0.056 0.944
27 H 0.065 0.935
28 H 0.031 0.969
29 H 0.029 0.971
30 H 0.263 0.737
31 H 0.139 0.861
32 H 0.119 0.881
33 H 0.386 0.614
34 H 0.407 0.593
35 H 0.092 0.908
36 H 0.077 0.923
37 H 0.091 0.909
38 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.262 -4.950 -11.771 12.772
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C 0.005 3.995
3 N -0.329 5.329
4 C 0.133 3.867
5 C -0.566 4.566
6 H 0.079 0.921
7 C -0.141 4.141
8 N -0.535 5.535
9 Si 0.720 3.280
10 H -0.207 1.207
11 H -0.212 1.212
12 H -0.199 1.199
13 C 0.074 3.926
14 C -0.111 4.111
15 C -0.197 4.197
16 C 0.108 3.892
17 N -0.422 5.422
18 C -0.233 4.233
19 C 0.292 3.708
20 C -0.253 4.253
21 O -0.374 6.374
22 C -0.160 4.160
23 H 0.065 0.935
24 H 0.090 0.910
25 H 0.068 0.932
26 H 0.074 0.926
27 H 0.084 0.916
28 H 0.049 0.951
29 H 0.047 0.953
30 H 0.073 0.927
31 H 0.156 0.844
32 H 0.137 0.863
33 H 0.213 0.787
34 H 0.247 0.753
35 H 0.110 0.890
36 H 0.096 0.904
37 H 0.109 0.891
38 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges 0.444 -4.764 -11.941 12.864
hybrid contribution -0.924 0.784 0.432 1.286
sum -0.480 -3.981 -11.508 12.187
Atomic orbital electron populations
1.22255 0.97245 1.00245 1.03177 1.21126 0.93802 0.83855 1.00682
1.47005 1.70011 1.12009 1.03856 1.19206 0.96320 0.92220 0.78980
1.21652 0.98214 1.30633 1.06111 0.92078 1.24962 0.96245 0.96450
0.96455 1.69922 1.27550 1.41810 1.14244 0.86588 0.83447 0.79290
0.78690 1.20683 1.21199 1.19871 1.17591 0.96940 0.91838 0.86281
1.21058 0.98149 0.93417 0.98468 1.20439 1.08328 1.00316 0.90653
1.17727 0.93849 0.90750 0.86845 1.43129 1.78493 1.13403 1.07170
1.19367 1.14918 0.94966 0.94049 1.22227 0.73371 0.87832 0.87394
1.22172 1.02870 0.96085 1.04158 1.90138 1.44989 1.66868 1.35450
1.20542 1.05998 0.99626 0.89848 0.93498 0.91012 0.93192 0.92618
0.91615 0.95077 0.95349 0.92738 0.84379 0.86304 0.78721 0.75271
0.88991 0.90448 0.89077 0.85911
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.72 10.24 37.16 0.38 -2.34 16
2 C 0.13 2.14 5.92 -4.05 -0.02 2.12 16
3 N -0.62 -12.32 2.60 -173.12 -0.45 -12.77 16
4 C 0.25 6.02 4.95 -5.19 -0.03 5.99 16
5 C -0.53 -13.72 8.92 -34.44 -0.31 -14.03 16
6 H 0.06 1.62 7.43 -52.48 -0.39 1.23 16
7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16
8 N -0.90 -25.09 13.29 55.43 0.74 -24.35 16
9 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16
10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
11 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16
12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16
13 C 0.18 3.37 6.55 -83.75 -0.55 2.82 16
14 C -0.09 -1.69 9.19 -39.33 -0.36 -2.05 16
15 C -0.17 -2.93 9.87 -39.45 -0.39 -3.32 16
16 C 0.22 3.56 6.77 -83.49 -0.57 3.00 16
17 N -0.87 -12.36 8.93 32.60 0.29 -12.07 16
18 C -0.23 -3.66 5.88 -104.92 -0.62 -4.27 16
19 C 0.41 5.92 7.20 -30.91 -0.22 5.70 16
20 C -0.20 -2.07 9.00 36.00 0.32 -1.74 16
21 O -0.49 -7.99 14.37 5.52 0.08 -7.91 16
22 C -0.14 -2.21 8.62 -38.90 -0.34 -2.54 16
23 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16
24 H 0.07 1.34 7.27 -51.93 -0.38 0.97 16
25 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16
26 H 0.06 0.78 6.18 -51.93 -0.32 0.46 16
27 H 0.07 1.07 7.89 -51.93 -0.41 0.67 16
28 H 0.03 0.79 6.19 -51.93 -0.32 0.46 16
29 H 0.03 0.72 7.89 -51.92 -0.41 0.31 16
30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16
31 H 0.14 2.86 6.11 -52.49 -0.32 2.54 16
32 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16
33 H 0.39 4.48 8.84 -40.82 -0.36 4.12 16
34 H 0.41 5.97 5.34 -40.98 -0.22 5.75 16
35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16
36 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16
37 H 0.09 0.83 7.91 -51.93 -0.41 0.42 16
38 H 0.12 1.72 5.04 -52.49 -0.26 1.46 16
LS Contribution 313.63 15.07 4.73 4.73
Total: -1.00 -28.85 313.63 -7.48 -36.33
By element:
Atomic # 1 Polarization: 14.40 SS G_CDS: -5.05 Total: 9.34 kcal
Atomic # 6 Polarization: -6.36 SS G_CDS: -2.79 Total: -9.15 kcal
Atomic # 7 Polarization: -49.77 SS G_CDS: 0.58 Total: -49.19 kcal
Atomic # 8 Polarization: -7.99 SS G_CDS: 0.08 Total: -7.91 kcal
Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal
Total LS contribution 4.73 Total: 4.73 kcal
Total: -28.85 -7.48 -36.33 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000228241352.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.110 kcal
(2) G-P(sol) polarization free energy of solvation -28.851 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.259 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.331 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.221 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds