Wall clock time and date at job start Mon Mar 30 2020 07:00:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46492 * 109.46859 * 2 1
4 4 C 1.46502 * 120.00464 * 90.00041 * 3 2 1
5 5 C 1.50701 * 109.47028 * 270.00026 * 4 3 2
6 6 H 1.08004 * 120.00160 * 359.71840 * 5 4 3
7 7 C 1.37881 * 120.00029 * 179.97438 * 5 4 3
8 8 N 1.31506 * 119.99966 * 359.71963 * 7 5 4
9 9 Si 1.86806 * 119.99888 * 179.72343 * 7 5 4
10 10 H 1.48503 * 109.46757 * 89.99680 * 9 7 5
11 11 H 1.48494 * 109.46853 * 209.99843 * 9 7 5
12 12 H 1.48503 * 109.46980 * 330.00010 * 9 7 5
13 13 C 1.40011 * 119.99908 * 269.99451 * 3 2 1
14 14 C 1.39254 * 119.88060 * 179.97438 * 13 3 2
15 15 C 1.37899 * 120.42457 * 179.97438 * 14 13 3
16 16 C 1.38918 * 120.17474 * 0.02786 * 15 14 13
17 17 N 1.38958 * 120.12481 * 179.97438 * 16 15 14
18 18 C 1.40586 * 119.75215 * 359.97438 * 16 15 14
19 19 C 1.46661 * 120.21029 * 180.02562 * 18 16 15
20 20 C 1.50690 * 120.00412 * 185.45224 * 19 18 16
21 21 O 1.21319 * 119.99459 * 5.45045 * 19 18 16
22 22 C 1.38224 * 119.87918 * 359.73171 * 13 3 2
23 23 H 1.09010 * 109.47153 * 180.02562 * 1 2 3
24 24 H 1.08998 * 109.47666 * 300.00153 * 1 2 3
25 25 H 1.08996 * 109.47259 * 60.00863 * 1 2 3
26 26 H 1.08993 * 109.47074 * 239.99472 * 2 1 3
27 27 H 1.09003 * 109.46966 * 119.99338 * 2 1 3
28 28 H 1.09000 * 109.47643 * 149.99883 * 4 3 2
29 29 H 1.09007 * 109.47110 * 29.99510 * 4 3 2
30 30 H 0.97001 * 120.00225 * 180.02562 * 8 7 5
31 31 H 1.08000 * 119.79061 * 0.02562 * 14 13 3
32 32 H 1.08002 * 119.91314 * 180.02562 * 15 14 13
33 33 H 0.96996 * 120.00204 * 354.47665 * 17 16 15
34 34 H 0.96996 * 119.99774 * 174.47200 * 17 16 15
35 35 H 1.09001 * 109.47240 * 59.99968 * 20 19 18
36 36 H 1.08996 * 109.47251 * 179.97438 * 20 19 18
37 37 H 1.09007 * 109.47217 * 299.99962 * 20 19 18
38 38 H 1.07991 * 120.08807 * 359.97438 * 22 13 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0182 1.3812 0.0000
4 6 2.2624 2.0719 1.2687
5 6 1.0066 2.7823 1.7037
6 1 0.1169 2.7287 1.0936
7 6 0.9948 3.5049 2.8779
8 7 2.0778 3.5698 3.6210
9 14 -0.5597 4.3919 3.4132
10 1 -1.3825 3.4851 4.2535
11 1 -0.1956 5.5991 4.1974
12 1 -1.3368 4.7962 2.2140
13 6 2.2517 2.0411 -1.2125
14 6 2.7153 3.3542 -1.2097
15 6 2.9495 4.0147 -2.3973
16 6 2.7236 3.3739 -3.6090
17 7 2.9594 4.0407 -4.8051
18 6 2.2555 2.0483 -3.6205
19 6 2.0142 1.3620 -4.8940
20 6 1.3972 -0.0128 -4.9039
21 8 2.3112 1.9012 -5.9394
22 6 2.0259 1.3852 -2.4081
23 1 -0.3634 -1.0278 0.0005
24 1 -0.3634 0.5138 0.8899
25 1 -0.3633 0.5137 -0.8900
26 1 1.8933 -0.5139 -0.8899
27 1 1.8933 -0.5137 0.8901
28 1 3.0643 2.7986 1.1384
29 1 2.5505 1.3452 2.0284
30 1 2.0695 4.0778 4.4472
31 1 2.8934 3.8583 -0.2713
32 1 3.3094 5.0330 -2.3854
33 1 3.2049 4.9790 -4.7972
34 1 2.8785 3.5677 -5.6481
35 1 0.4137 0.0269 -4.4357
36 1 1.2957 -0.3581 -5.9328
37 1 2.0356 -0.7016 -4.3504
38 1 1.6705 0.3655 -2.4075
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000228241352.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:00:16
Heat of formation + Delta-G solvation = -21.966848 kcal
Electronic energy + Delta-G solvation = -19772.756052 eV
Core-core repulsion = 16807.441437 eV
Total energy + Delta-G solvation = -2965.314615 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 262.142 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-41.16825 -39.56452 -37.59742 -35.05153 -34.38574 -33.02627 -31.37666 -30.34129
-29.34405 -27.46938 -25.21218 -23.89092 -23.58733 -21.69611 -20.35502 -18.54029
-18.41479 -17.70961 -17.28329 -16.60715 -16.17174 -15.91335 -15.73125 -15.45012
-15.04923 -14.91626 -14.13788 -14.10806 -13.95983 -13.62440 -13.23063 -13.21116
-12.97348 -12.91422 -12.74771 -12.73363 -12.62452 -12.15772 -11.94340 -11.88892
-11.40646 -11.37116 -10.56524 -10.50389 -9.81209 -9.48779 -8.22139 -7.34566
-6.26988 -0.10931 0.96170 1.38917 1.40829 1.50472 1.62942 2.39282
2.71937 3.13338 3.14588 3.19944 3.34014 3.97820 4.22606 4.31367
4.46007 4.54409 4.61140 4.67103 4.74068 4.75160 4.75765 4.95423
5.08630 5.12314 5.19526 5.23486 5.27986 5.39439 5.45286 5.59087
5.64469 5.76144 5.87120 6.19211 6.53659 6.61580 6.80481 6.96413
7.10115 7.20337 7.44763 8.90680
Molecular weight = 262.14amu
Principal moments of inertia in cm(-1)
A = 0.023484 B = 0.005662 C = 0.005048
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1192.024169 B = 4944.248849 C = 5545.357994
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.124 3.876
3 N -0.629 5.629
4 C 0.269 3.731
5 C -0.527 4.527
6 H 0.053 0.947
7 C 0.012 3.988
8 N -0.929 5.929
9 Si 0.952 3.048
10 H -0.274 1.274
11 H -0.283 1.283
12 H -0.273 1.273
13 C 0.151 3.849
14 C -0.114 4.114
15 C -0.175 4.175
16 C 0.209 3.791
17 N -0.863 5.863
18 C -0.235 4.235
19 C 0.406 3.594
20 C -0.191 4.191
21 O -0.512 6.512
22 C -0.114 4.114
23 H 0.081 0.919
24 H 0.035 0.965
25 H 0.049 0.951
26 H 0.090 0.910
27 H 0.061 0.939
28 H 0.009 0.991
29 H 0.007 0.993
30 H 0.264 0.736
31 H 0.109 0.891
32 H 0.134 0.866
33 H 0.398 0.602
34 H 0.408 0.592
35 H 0.107 0.893
36 H 0.088 0.912
37 H 0.111 0.889
38 H 0.152 0.848
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.878 -6.270 -13.703 15.095
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.001 3.999
3 N -0.340 5.340
4 C 0.147 3.853
5 C -0.566 4.566
6 H 0.071 0.929
7 C -0.187 4.187
8 N -0.569 5.569
9 Si 0.778 3.222
10 H -0.199 1.199
11 H -0.209 1.209
12 H -0.198 1.198
13 C 0.049 3.951
14 C -0.137 4.137
15 C -0.198 4.198
16 C 0.100 3.900
17 N -0.413 5.413
18 C -0.242 4.242
19 C 0.291 3.709
20 C -0.248 4.248
21 O -0.393 6.393
22 C -0.138 4.138
23 H 0.100 0.900
24 H 0.054 0.946
25 H 0.068 0.932
26 H 0.108 0.892
27 H 0.080 0.920
28 H 0.027 0.973
29 H 0.025 0.975
30 H 0.073 0.927
31 H 0.127 0.873
32 H 0.152 0.848
33 H 0.227 0.773
34 H 0.248 0.752
35 H 0.126 0.874
36 H 0.107 0.893
37 H 0.130 0.870
38 H 0.170 0.830
Dipole moment (debyes) X Y Z Total
from point charges -0.699 -6.084 -13.918 15.206
hybrid contribution -0.526 1.190 0.894 1.579
sum -1.225 -4.894 -13.024 13.967
Atomic orbital electron populations
1.22161 0.96684 1.01890 1.01314 1.21363 0.94215 0.82200 1.02158
1.46839 1.71246 1.13175 1.02738 1.18707 0.94761 0.91233 0.80555
1.21855 0.98550 1.30383 1.05846 0.92898 1.25701 0.98939 0.97321
0.96700 1.70029 1.29340 1.42847 1.14714 0.85641 0.80093 0.78251
0.78199 1.19914 1.20902 1.19777 1.17796 0.98486 0.92097 0.86764
1.20941 1.00373 0.94239 0.98108 1.20526 1.08053 1.01008 0.90190
1.17918 0.93596 0.91310 0.87218 1.43097 1.77799 1.14068 1.06378
1.19762 1.14234 0.95052 0.95102 1.22649 0.72860 0.89241 0.86109
1.22204 1.03521 0.93392 1.05637 1.90140 1.45745 1.67690 1.35749
1.20745 1.03905 1.00504 0.88604 0.90039 0.94625 0.93184 0.89181
0.92034 0.97330 0.97511 0.92700 0.87347 0.84775 0.77320 0.75219
0.87442 0.89266 0.87044 0.83034
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.86 10.24 71.98 0.74 -4.12 16
2 C 0.12 3.89 5.92 86.38 0.51 4.41 16
3 N -0.63 -25.23 2.60 -701.63 -1.82 -27.06 16
4 C 0.27 13.40 4.95 85.63 0.42 13.83 16
5 C -0.53 -28.30 8.92 25.60 0.23 -28.08 16
6 H 0.05 2.88 7.43 -2.91 -0.02 2.85 16
7 C 0.01 0.66 5.46 84.66 0.46 1.12 16
8 N -0.93 -53.55 13.29 21.45 0.28 -53.26 16
9 Si 0.95 43.45 29.54 68.60 2.03 45.47 16
10 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16
11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16
12 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16
13 C 0.15 5.70 6.55 38.08 0.25 5.95 16
14 C -0.11 -4.48 9.19 22.43 0.21 -4.27 16
15 C -0.17 -5.87 9.87 22.35 0.22 -5.65 16
16 C 0.21 6.59 6.77 38.75 0.26 6.85 16
17 N -0.86 -23.02 8.93 -50.77 -0.45 -23.48 16
18 C -0.23 -7.04 5.88 -20.06 -0.12 -7.16 16
19 C 0.41 10.52 7.20 27.88 0.20 10.72 16
20 C -0.19 -3.18 9.00 71.23 0.64 -2.53 16
21 O -0.51 -15.23 14.37 -3.15 -0.05 -15.27 16
22 C -0.11 -3.44 8.62 22.71 0.20 -3.24 16
23 H 0.08 1.85 8.14 -2.38 -0.02 1.84 16
24 H 0.03 1.31 7.27 -2.39 -0.02 1.29 16
25 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16
26 H 0.09 2.20 6.18 -2.39 -0.01 2.18 16
27 H 0.06 1.97 7.89 -2.39 -0.02 1.95 16
28 H 0.01 0.47 6.19 -2.39 -0.01 0.46 16
29 H 0.01 0.37 7.89 -2.38 -0.02 0.35 16
30 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16
31 H 0.11 4.85 6.11 -2.91 -0.02 4.83 16
32 H 0.13 3.91 8.06 -2.91 -0.02 3.88 16
33 H 0.40 8.60 8.84 -92.71 -0.82 7.78 16
34 H 0.41 11.19 5.34 -95.24 -0.51 10.68 16
35 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16
36 H 0.09 1.32 8.12 -2.39 -0.02 1.31 16
37 H 0.11 1.45 7.91 -2.38 -0.02 1.44 16
38 H 0.15 3.60 5.04 -2.92 -0.01 3.59 16
Total: -1.00 -63.68 313.63 3.97 -59.70
By element:
Atomic # 1 Polarization: 26.32 SS G_CDS: -0.24 Total: 26.08 kcal
Atomic # 6 Polarization: -16.41 SS G_CDS: 4.22 Total: -12.19 kcal
Atomic # 7 Polarization: -101.81 SS G_CDS: -1.99 Total: -103.80 kcal
Atomic # 8 Polarization: -15.23 SS G_CDS: -0.05 Total: -15.27 kcal
Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal
Total: -63.68 3.97 -59.70 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000228241352.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.738 kcal
(2) G-P(sol) polarization free energy of solvation -63.679 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.941 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.974 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.704 kcal
(6) G-S(sol) free energy of system = (1) + (5) -21.967 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds