Wall clock time and date at job start Mon Mar 30 2020 06:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21316 * 120.00055 * 2 1 4 4 C 1.46652 * 119.99945 * 179.97438 * 2 1 3 5 5 C 1.40081 * 120.20242 * 354.14534 * 4 2 1 6 6 C 1.38229 * 119.81754 * 180.25156 * 5 4 2 7 7 N 1.40009 * 119.87985 * 179.73252 * 6 5 4 8 8 C 1.46497 * 119.99996 * 353.93443 * 7 6 5 9 9 C 1.46503 * 119.99913 * 173.65816 * 7 6 5 10 10 H 1.08996 * 109.46946 * 4.68790 * 9 7 6 11 11 C 1.53005 * 109.46994 * 124.69100 * 9 7 6 12 12 C 1.50703 * 109.46858 * 244.68567 * 9 7 6 13 13 H 1.07997 * 120.00153 * 0.02562 * 12 9 7 14 14 C 1.37880 * 119.99975 * 179.97438 * 12 9 7 15 15 N 1.31524 * 119.99754 * 0.02562 * 14 12 9 16 16 Si 1.86791 * 120.00195 * 180.02562 * 14 12 9 17 17 H 1.48502 * 109.47137 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47278 * 120.00184 * 16 14 12 19 19 H 1.48504 * 109.47446 * 239.99991 * 16 14 12 20 20 C 1.39252 * 120.24092 * 359.45477 * 6 5 4 21 21 C 1.37906 * 120.42503 * 0.25354 * 20 6 5 22 22 C 1.38928 * 120.16874 * 0.02562 * 21 20 6 23 23 N 1.38954 * 120.11822 * 179.97438 * 22 21 20 24 24 H 1.08999 * 109.47230 * 270.00713 * 1 2 3 25 25 H 1.09003 * 109.46737 * 30.00395 * 1 2 3 26 26 H 1.08998 * 109.47151 * 150.00125 * 1 2 3 27 27 H 1.07998 * 120.09676 * 359.97438 * 5 4 2 28 28 H 1.09000 * 109.47308 * 90.00058 * 8 7 6 29 29 H 1.09006 * 109.47439 * 210.00194 * 8 7 6 30 30 H 1.08997 * 109.47225 * 329.99867 * 8 7 6 31 31 H 1.09003 * 109.46694 * 179.97438 * 11 9 7 32 32 H 1.08997 * 109.46809 * 299.99517 * 11 9 7 33 33 H 1.08991 * 109.46831 * 59.99948 * 11 9 7 34 34 H 0.96998 * 119.99563 * 179.97438 * 15 14 12 35 35 H 1.08005 * 119.79072 * 180.27441 * 20 6 5 36 36 H 1.07989 * 119.91410 * 180.02562 * 21 20 6 37 37 H 0.96999 * 120.00116 * 5.37856 * 23 22 21 38 38 H 0.97001 * 119.99924 * 185.37406 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2403 -1.2701 0.0006 5 6 1.5496 -2.4824 0.1246 6 6 2.2492 -3.6746 0.1294 7 7 1.5607 -4.8868 0.2590 8 6 0.1195 -4.8862 0.5220 9 6 2.2804 -6.1559 0.1254 10 1 3.3463 -5.9588 0.0115 11 6 2.0497 -7.0070 1.3758 12 6 1.7739 -6.8954 -1.0861 13 1 0.9943 -6.4632 -1.6958 14 6 2.3066 -8.1234 -1.4167 15 7 3.2564 -8.6496 -0.6745 16 14 1.6794 -9.0398 -2.9187 17 1 0.6176 -8.2391 -3.5794 18 1 2.7992 -9.2567 -3.8697 19 1 1.1232 -10.3521 -2.5015 20 6 3.6357 -3.6747 0.0001 21 6 4.3251 -2.4873 -0.1287 22 6 3.6400 -1.2787 -0.1299 23 7 4.3358 -0.0829 -0.2592 24 1 -0.3633 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 0.4739 -2.4856 0.2207 28 1 -0.4225 -4.8893 -0.4236 29 1 -0.1456 -5.7744 1.0956 30 1 -0.1458 -3.9945 1.0900 31 1 2.5848 -7.9514 1.2762 32 1 2.4160 -6.4721 2.2520 33 1 0.9838 -7.2040 1.4896 34 1 3.6309 -9.5137 -0.9069 35 1 4.1746 -4.6107 0.0004 36 1 5.4003 -2.4970 -0.2288 37 1 5.2911 -0.0934 -0.4269 38 1 3.8662 0.7623 -0.1818 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228244887.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:16 Heat of formation + Delta-G solvation = 4.006640 kcal Electronic energy + Delta-G solvation = -19719.278618 eV Core-core repulsion = 16755.090298 eV Total energy + Delta-G solvation = -2964.188320 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.94624 -38.26244 -36.27377 -33.86387 -32.46092 -31.65627 -29.74787 -28.69055 -27.62134 -25.39221 -24.94418 -23.17546 -21.23354 -20.43031 -18.93155 -17.17301 -16.75837 -16.01777 -15.90854 -15.05573 -14.85376 -14.62837 -14.58119 -13.81354 -13.71470 -13.57892 -12.80115 -12.58761 -12.47917 -12.22158 -11.97999 -11.97221 -11.55649 -11.36260 -11.12678 -10.94736 -10.70074 -10.59970 -10.42710 -10.09852 -10.03672 -9.35931 -9.12430 -8.53001 -8.46710 -8.03830 -6.21317 -5.88192 -4.18070 1.11091 2.26207 2.82241 3.23440 3.32161 3.36111 4.14295 4.32711 4.40587 4.40868 4.45842 5.17093 5.20465 5.22709 5.44601 5.57873 5.72877 5.80568 5.85115 6.01958 6.07520 6.20551 6.35136 6.43753 6.53068 6.64382 6.76186 6.81096 6.93174 7.06235 7.15933 7.40069 7.65247 7.69008 7.88298 7.94702 8.17888 8.31131 8.36152 8.63038 8.90804 9.49475 10.93434 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.026983 B = 0.005081 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.424151 B = 5509.755617 C = 5787.409188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.408 3.592 3 O -0.494 6.494 4 C -0.222 4.222 5 C -0.135 4.135 6 C 0.176 3.824 7 N -0.617 5.617 8 C 0.105 3.895 9 C 0.267 3.733 10 H 0.049 0.951 11 C -0.150 4.150 12 C -0.521 4.521 13 H 0.059 0.941 14 C 0.063 3.937 15 N -0.892 5.892 16 Si 0.896 3.104 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.101 4.101 21 C -0.171 4.171 22 C 0.215 3.785 23 N -0.872 5.872 24 H 0.093 0.907 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.124 0.876 28 H 0.036 0.964 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.091 0.909 32 H 0.012 0.988 33 H 0.031 0.969 34 H 0.262 0.738 35 H 0.135 0.865 36 H 0.120 0.880 37 H 0.386 0.614 38 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.500 11.517 2.555 12.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.292 3.708 3 O -0.374 6.374 4 C -0.229 4.229 5 C -0.160 4.160 6 C 0.071 3.929 7 N -0.327 5.327 8 C -0.039 4.039 9 C 0.167 3.833 10 H 0.067 0.933 11 C -0.209 4.209 12 C -0.560 4.560 13 H 0.078 0.922 14 C -0.139 4.139 15 N -0.531 5.531 16 Si 0.724 3.276 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.123 4.123 21 C -0.194 4.194 22 C 0.106 3.894 23 N -0.422 5.422 24 H 0.111 0.889 25 H 0.099 0.901 26 H 0.106 0.894 27 H 0.142 0.858 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.110 0.890 32 H 0.031 0.969 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.153 0.847 36 H 0.138 0.862 37 H 0.213 0.787 38 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -2.259 11.689 2.596 12.185 hybrid contribution -0.157 -0.585 -0.917 1.099 sum -2.416 11.105 1.679 11.488 Atomic orbital electron populations 1.22172 0.94388 1.04546 1.04336 1.22230 0.91478 0.87401 0.69658 1.90139 1.71115 1.35021 1.41142 1.19398 0.91909 0.94155 1.17457 1.20567 0.98914 0.89871 1.06623 1.17665 0.91156 0.86501 0.97572 1.47006 1.06524 1.03451 1.75674 1.21324 0.82428 1.00759 0.99356 1.18841 0.92683 0.78328 0.93490 0.93322 1.22126 0.99923 1.02775 0.96056 1.21503 1.21237 1.03114 1.10153 0.92249 1.24904 0.94922 0.97218 0.96835 1.69875 1.26604 1.18222 1.38366 0.86478 0.78802 0.79586 0.82776 1.19838 1.20975 1.20995 1.21048 0.92931 0.98309 1.00033 1.20419 0.99117 0.90705 1.09121 1.17710 0.89990 0.86878 0.94790 1.43120 1.10751 1.06986 1.81340 0.88877 0.90064 0.89385 0.85795 0.94549 0.91673 0.93582 0.89021 0.96916 0.95042 0.92804 0.84711 0.86245 0.78702 0.75251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.09 9.63 36.01 0.35 -1.74 16 2 C 0.41 5.89 7.19 -30.91 -0.22 5.67 16 3 O -0.49 -7.91 14.39 5.53 0.08 -7.83 16 4 C -0.22 -3.57 5.88 -104.93 -0.62 -4.19 16 5 C -0.13 -2.21 8.43 -38.89 -0.33 -2.54 16 6 C 0.18 3.34 6.53 -83.75 -0.55 2.79 16 7 N -0.62 -12.55 2.90 -173.32 -0.50 -13.06 16 8 C 0.11 1.82 9.49 59.85 0.57 2.39 16 9 C 0.27 6.30 2.58 -69.08 -0.18 6.12 16 10 H 0.05 1.23 5.30 -51.93 -0.28 0.95 16 11 C -0.15 -3.42 8.86 37.16 0.33 -3.09 16 12 C -0.52 -13.55 8.44 -34.44 -0.29 -13.84 16 13 H 0.06 1.58 7.78 -52.49 -0.41 1.17 16 14 C 0.06 1.65 5.30 -17.81 -0.09 1.56 16 15 N -0.89 -24.08 11.32 55.43 0.63 -23.45 16 16 Si 0.90 20.62 29.54 -169.99 -5.02 15.59 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 C -0.10 -1.87 9.30 -39.33 -0.37 -2.23 16 21 C -0.17 -2.78 9.87 -39.45 -0.39 -3.17 16 22 C 0.21 3.47 6.77 -83.49 -0.57 2.90 16 23 N -0.87 -12.11 8.93 32.60 0.29 -11.82 16 24 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.09 0.87 6.71 -51.93 -0.35 0.52 16 27 H 0.12 1.76 4.76 -52.49 -0.25 1.51 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 1.14 6.21 -51.93 -0.32 0.82 16 30 H 0.05 0.66 6.46 -51.93 -0.34 0.33 16 31 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 32 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.03 0.68 6.53 -51.93 -0.34 0.34 16 34 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 35 H 0.14 2.64 5.72 -52.48 -0.30 2.34 16 36 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 37 H 0.39 4.35 8.84 -40.82 -0.36 3.98 16 38 H 0.41 5.88 5.34 -40.97 -0.22 5.66 16 LS Contribution 305.32 15.07 4.60 4.60 Total: -1.00 -28.38 305.32 -7.00 -35.38 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -4.72 Total: 9.95 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -2.35 Total: -9.37 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: 0.42 Total: -48.33 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: 0.08 Total: -7.83 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.38 -7.00 -35.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228244887.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.386 kcal (2) G-P(sol) polarization free energy of solvation -28.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds