Wall clock time and date at job start Mon Mar 30 2020 06:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21324 * 119.99911 * 2 1 4 4 C 1.46650 * 120.00144 * 179.71557 * 2 1 3 5 5 C 1.40077 * 120.20777 * 356.30766 * 4 2 1 6 6 C 1.38224 * 119.82364 * 179.97438 * 5 4 2 7 7 N 1.40007 * 119.88207 * 179.97438 * 6 5 4 8 8 C 1.46507 * 119.99870 * 354.01354 * 7 6 5 9 9 C 1.46502 * 120.00278 * 174.00888 * 7 6 5 10 10 H 1.09003 * 109.46928 * 356.00815 * 9 7 6 11 11 C 1.52997 * 109.47473 * 236.00836 * 9 7 6 12 12 C 1.50698 * 109.46949 * 116.00378 * 9 7 6 13 13 H 1.08002 * 120.00156 * 0.02562 * 12 9 7 14 14 C 1.37881 * 119.99683 * 180.02562 * 12 9 7 15 15 N 1.31509 * 120.00020 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99864 * 180.02562 * 14 12 9 17 17 H 1.48493 * 109.47317 * 60.00022 * 16 14 12 18 18 H 1.48494 * 109.47385 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47040 * 300.00181 * 16 14 12 20 20 C 1.39253 * 120.23764 * 0.02562 * 6 5 4 21 21 C 1.37904 * 120.42858 * 359.97438 * 20 6 5 22 22 C 1.38930 * 120.16756 * 359.71828 * 21 20 6 23 23 N 1.38950 * 120.12218 * 180.27595 * 22 21 20 24 24 H 1.09002 * 109.46756 * 180.27651 * 1 2 3 25 25 H 1.09000 * 109.47811 * 300.28157 * 1 2 3 26 26 H 1.09003 * 109.47102 * 60.28544 * 1 2 3 27 27 H 1.07996 * 120.09070 * 0.02562 * 5 4 2 28 28 H 1.09002 * 109.46957 * 90.00223 * 8 7 6 29 29 H 1.09001 * 109.46824 * 209.99740 * 8 7 6 30 30 H 1.08999 * 109.47105 * 329.99574 * 8 7 6 31 31 H 1.09000 * 109.47297 * 59.99084 * 11 9 7 32 32 H 1.08993 * 109.47132 * 180.02562 * 11 9 7 33 33 H 1.09003 * 109.47026 * 299.99918 * 11 9 7 34 34 H 0.97001 * 119.99726 * 179.97438 * 15 14 12 35 35 H 1.08004 * 119.78657 * 179.97438 * 20 6 5 36 36 H 1.07991 * 119.91626 * 179.97438 * 21 20 6 37 37 H 0.96995 * 120.00673 * 195.51298 * 23 22 21 38 38 H 0.97006 * 120.00097 * 15.51621 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0507 0.0000 4 6 2.2403 -1.2700 0.0063 5 6 1.5465 -2.4840 0.0903 6 6 2.2456 -3.6764 0.0951 7 7 1.5534 -4.8904 0.1795 8 6 0.1042 -4.8940 0.3944 9 6 2.2783 -6.1573 0.0529 10 1 3.3257 -5.9557 -0.1718 11 6 1.6644 -6.9854 -1.0776 12 6 2.1806 -6.9234 1.3470 13 1 1.6331 -6.5083 2.1802 14 6 2.7904 -8.1542 1.4671 15 7 3.4576 -8.6593 0.4526 16 14 2.6688 -9.1041 3.0709 17 1 1.2419 -9.3794 3.3763 18 1 3.4046 -10.3876 2.9431 19 1 3.2637 -8.3002 4.1687 20 6 3.6360 -3.6744 0.0173 21 6 4.3292 -2.4852 -0.0657 22 6 3.6436 -1.2769 -0.0783 23 7 4.3427 -0.0794 -0.1678 24 1 -0.3633 -1.0277 0.0050 25 1 -0.3635 0.5182 0.8874 26 1 -0.3633 0.5094 -0.8926 27 1 0.4682 -2.4884 0.1503 28 1 -0.4059 -4.8797 -0.5688 29 1 -0.1795 -5.7924 0.9425 30 1 -0.1800 -4.0127 0.9694 31 1 1.7349 -6.4312 -2.0136 32 1 2.2034 -7.9281 -1.1715 33 1 0.6170 -7.1870 -0.8529 34 1 3.8868 -9.5250 0.5373 35 1 4.1749 -4.6104 0.0220 36 1 5.4074 -2.4933 -0.1253 37 1 3.9013 0.7572 0.0468 38 1 5.2723 -0.0800 -0.4450 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228244894.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:18 Heat of formation + Delta-G solvation = 4.462873 kcal Electronic energy + Delta-G solvation = -19715.967113 eV Core-core repulsion = 16751.798577 eV Total energy + Delta-G solvation = -2964.168536 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.93612 -38.24880 -36.26288 -33.86300 -32.46253 -31.68202 -29.72962 -28.67894 -27.62075 -25.35627 -24.96444 -23.16892 -21.22693 -20.43320 -18.91251 -17.20625 -16.71435 -16.04165 -15.90428 -15.04671 -14.85466 -14.63531 -14.58511 -13.83031 -13.78426 -13.61424 -12.78238 -12.56712 -12.37431 -12.16525 -11.94552 -11.90322 -11.62357 -11.31472 -11.10701 -10.91212 -10.75363 -10.64366 -10.39522 -10.14639 -10.02119 -9.31688 -9.16282 -8.52756 -8.46810 -8.04457 -6.21008 -5.90680 -4.18952 1.11307 2.24429 2.83281 3.25644 3.30823 3.33429 4.14173 4.32786 4.40920 4.42269 4.43391 5.14643 5.17853 5.21923 5.45304 5.62009 5.70122 5.82883 5.87915 6.03522 6.08842 6.18984 6.35678 6.47704 6.52779 6.65272 6.76168 6.82633 6.94566 7.05662 7.17474 7.41349 7.65088 7.70762 7.86491 7.96172 8.17163 8.30829 8.36001 8.62480 8.89476 9.48508 10.92935 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.028270 B = 0.005046 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.224112 B = 5547.529542 C = 5893.627152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.407 3.593 3 O -0.494 6.494 4 C -0.218 4.218 5 C -0.138 4.138 6 C 0.177 3.823 7 N -0.616 5.616 8 C 0.104 3.896 9 C 0.268 3.732 10 H 0.049 0.951 11 C -0.148 4.148 12 C -0.525 4.525 13 H 0.059 0.941 14 C 0.064 3.936 15 N -0.891 5.891 16 Si 0.896 3.104 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.102 4.102 21 C -0.168 4.168 22 C 0.211 3.789 23 N -0.874 5.874 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.126 0.874 28 H 0.031 0.969 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.011 0.989 32 H 0.091 0.909 33 H 0.029 0.971 34 H 0.263 0.737 35 H 0.137 0.863 36 H 0.120 0.880 37 H 0.407 0.593 38 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.225 11.471 -1.931 12.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.291 3.709 3 O -0.373 6.373 4 C -0.225 4.225 5 C -0.163 4.163 6 C 0.072 3.928 7 N -0.326 5.326 8 C -0.040 4.040 9 C 0.168 3.832 10 H 0.066 0.934 11 C -0.207 4.207 12 C -0.564 4.564 13 H 0.077 0.923 14 C -0.138 4.138 15 N -0.530 5.530 16 Si 0.724 3.276 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.203 1.203 20 C -0.124 4.124 21 C -0.190 4.190 22 C 0.104 3.896 23 N -0.423 5.423 24 H 0.104 0.896 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.143 0.857 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.030 0.970 32 H 0.109 0.891 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.154 0.846 36 H 0.138 0.862 37 H 0.246 0.754 38 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -2.984 11.622 -1.955 12.158 hybrid contribution 0.103 -0.562 0.869 1.040 sum -2.882 11.060 -1.086 11.481 Atomic orbital electron populations 1.22185 0.94519 1.04833 1.04109 1.22208 0.91418 0.87455 0.69773 1.90175 1.71180 1.35006 1.40987 1.19470 0.91871 0.94123 1.17050 1.20625 0.98897 0.89879 1.06910 1.17689 0.91182 0.86487 0.97432 1.47032 1.05738 1.03443 1.76347 1.21347 0.81982 1.01658 0.99012 1.18824 0.91766 0.78413 0.94246 0.93374 1.22110 0.99991 1.02593 0.95989 1.21427 1.33738 1.02837 0.98349 0.92311 1.24896 0.94988 0.97259 0.96621 1.69852 1.34183 1.18702 1.30221 0.86591 0.78198 0.79071 0.83756 1.20285 1.21239 1.20265 1.21080 0.92883 0.98409 1.00052 1.20478 0.99071 0.90756 1.08738 1.17691 0.89826 0.86862 0.95255 1.42980 1.14473 1.07426 1.77439 0.89631 0.89356 0.89360 0.85676 0.95098 0.91050 0.93471 0.96997 0.89080 0.95171 0.92664 0.84566 0.86233 0.75429 0.78680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.11 10.19 36.00 0.37 -1.74 16 2 C 0.41 5.89 7.20 -30.92 -0.22 5.66 16 3 O -0.49 -7.91 14.41 5.52 0.08 -7.83 16 4 C -0.22 -3.51 5.88 -104.93 -0.62 -4.13 16 5 C -0.14 -2.26 8.54 -38.90 -0.33 -2.60 16 6 C 0.18 3.36 6.53 -83.75 -0.55 2.81 16 7 N -0.62 -12.53 2.90 -173.32 -0.50 -13.03 16 8 C 0.10 1.80 8.92 59.85 0.53 2.33 16 9 C 0.27 6.31 2.55 -69.08 -0.18 6.14 16 10 H 0.05 1.21 5.36 -51.93 -0.28 0.93 16 11 C -0.15 -3.39 8.91 37.16 0.33 -3.06 16 12 C -0.52 -13.53 8.04 -34.44 -0.28 -13.80 16 13 H 0.06 1.54 7.61 -52.49 -0.40 1.14 16 14 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 15 N -0.89 -23.97 11.32 55.43 0.63 -23.35 16 16 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 C -0.10 -1.90 9.26 -39.33 -0.36 -2.26 16 21 C -0.17 -2.74 9.89 -39.45 -0.39 -3.13 16 22 C 0.21 3.42 6.77 -83.49 -0.57 2.85 16 23 N -0.87 -12.12 8.81 32.60 0.29 -11.84 16 24 H 0.08 0.83 5.61 -51.93 -0.29 0.54 16 25 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.13 1.76 4.18 -52.49 -0.22 1.54 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 1.32 7.32 -51.93 -0.38 0.94 16 30 H 0.05 0.70 6.46 -51.93 -0.34 0.37 16 31 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.09 2.29 6.07 -51.93 -0.32 1.97 16 33 H 0.03 0.66 7.58 -51.93 -0.39 0.26 16 34 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 35 H 0.14 2.71 5.80 -52.48 -0.30 2.41 16 36 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.41 5.86 5.53 -40.83 -0.23 5.63 16 38 H 0.39 4.35 8.87 -40.82 -0.36 3.99 16 LS Contribution 305.61 15.07 4.61 4.61 Total: -1.00 -28.10 305.61 -7.03 -35.13 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -4.75 Total: 10.17 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -2.35 Total: -9.34 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: 0.41 Total: -48.21 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: 0.08 Total: -7.83 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.10 -7.03 -35.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228244894.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.596 kcal (2) G-P(sol) polarization free energy of solvation -28.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds