Wall clock time and date at job start Mon Mar 30 2020 06:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21324 * 119.99911 * 2 1 4 4 C 1.46650 * 120.00144 * 179.71557 * 2 1 3 5 5 C 1.40077 * 120.20777 * 356.30766 * 4 2 1 6 6 C 1.38224 * 119.82364 * 179.97438 * 5 4 2 7 7 N 1.40007 * 119.88207 * 179.97438 * 6 5 4 8 8 C 1.46507 * 119.99870 * 354.01354 * 7 6 5 9 9 C 1.46502 * 120.00278 * 174.00888 * 7 6 5 10 10 H 1.09003 * 109.46928 * 356.00815 * 9 7 6 11 11 C 1.52997 * 109.47473 * 236.00836 * 9 7 6 12 12 C 1.50698 * 109.46949 * 116.00378 * 9 7 6 13 13 H 1.08002 * 120.00156 * 0.02562 * 12 9 7 14 14 C 1.37881 * 119.99683 * 180.02562 * 12 9 7 15 15 N 1.31509 * 120.00020 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99864 * 180.02562 * 14 12 9 17 17 H 1.48493 * 109.47317 * 60.00022 * 16 14 12 18 18 H 1.48494 * 109.47385 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47040 * 300.00181 * 16 14 12 20 20 C 1.39253 * 120.23764 * 0.02562 * 6 5 4 21 21 C 1.37904 * 120.42858 * 359.97438 * 20 6 5 22 22 C 1.38930 * 120.16756 * 359.71828 * 21 20 6 23 23 N 1.38950 * 120.12218 * 180.27595 * 22 21 20 24 24 H 1.09002 * 109.46756 * 180.27651 * 1 2 3 25 25 H 1.09000 * 109.47811 * 300.28157 * 1 2 3 26 26 H 1.09003 * 109.47102 * 60.28544 * 1 2 3 27 27 H 1.07996 * 120.09070 * 0.02562 * 5 4 2 28 28 H 1.09002 * 109.46957 * 90.00223 * 8 7 6 29 29 H 1.09001 * 109.46824 * 209.99740 * 8 7 6 30 30 H 1.08999 * 109.47105 * 329.99574 * 8 7 6 31 31 H 1.09000 * 109.47297 * 59.99084 * 11 9 7 32 32 H 1.08993 * 109.47132 * 180.02562 * 11 9 7 33 33 H 1.09003 * 109.47026 * 299.99918 * 11 9 7 34 34 H 0.97001 * 119.99726 * 179.97438 * 15 14 12 35 35 H 1.08004 * 119.78657 * 179.97438 * 20 6 5 36 36 H 1.07991 * 119.91626 * 179.97438 * 21 20 6 37 37 H 0.96995 * 120.00673 * 195.51298 * 23 22 21 38 38 H 0.97006 * 120.00097 * 15.51621 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0507 0.0000 4 6 2.2403 -1.2700 0.0063 5 6 1.5465 -2.4840 0.0903 6 6 2.2456 -3.6764 0.0951 7 7 1.5534 -4.8904 0.1795 8 6 0.1042 -4.8940 0.3944 9 6 2.2783 -6.1573 0.0529 10 1 3.3257 -5.9557 -0.1718 11 6 1.6644 -6.9854 -1.0776 12 6 2.1806 -6.9234 1.3470 13 1 1.6331 -6.5083 2.1802 14 6 2.7904 -8.1542 1.4671 15 7 3.4576 -8.6593 0.4526 16 14 2.6688 -9.1041 3.0709 17 1 1.2419 -9.3794 3.3763 18 1 3.4046 -10.3876 2.9431 19 1 3.2637 -8.3002 4.1687 20 6 3.6360 -3.6744 0.0173 21 6 4.3292 -2.4852 -0.0657 22 6 3.6436 -1.2769 -0.0783 23 7 4.3427 -0.0794 -0.1678 24 1 -0.3633 -1.0277 0.0050 25 1 -0.3635 0.5182 0.8874 26 1 -0.3633 0.5094 -0.8926 27 1 0.4682 -2.4884 0.1503 28 1 -0.4059 -4.8797 -0.5688 29 1 -0.1795 -5.7924 0.9425 30 1 -0.1800 -4.0127 0.9694 31 1 1.7349 -6.4312 -2.0136 32 1 2.2034 -7.9281 -1.1715 33 1 0.6170 -7.1870 -0.8529 34 1 3.8868 -9.5250 0.5373 35 1 4.1749 -4.6104 0.0220 36 1 5.4074 -2.4933 -0.1253 37 1 3.9013 0.7572 0.0468 38 1 5.2723 -0.0800 -0.4450 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228244894.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:18 Heat of formation + Delta-G solvation = -11.709583 kcal Electronic energy + Delta-G solvation = -19716.668404 eV Core-core repulsion = 16751.798577 eV Total energy + Delta-G solvation = -2964.869826 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.17286 -39.57261 -37.71122 -35.41134 -34.07326 -32.90141 -31.36554 -29.81022 -28.94757 -27.23903 -26.50200 -24.45064 -22.75401 -21.78181 -20.27674 -18.61025 -18.33410 -17.53114 -17.26996 -16.65749 -16.14870 -15.95409 -15.70284 -15.34672 -15.13383 -14.96128 -14.24160 -14.16807 -13.66017 -13.48276 -13.39748 -12.99493 -12.90722 -12.84148 -12.76825 -12.70702 -12.32020 -12.25832 -12.10104 -11.83623 -11.58094 -11.00607 -10.52417 -10.42196 -9.84218 -9.43216 -8.13618 -7.36539 -6.23142 -0.13703 0.92843 1.43460 1.44472 1.51559 1.61590 2.41074 2.75878 3.09944 3.18114 3.20149 3.32417 3.95226 4.18286 4.45208 4.49688 4.53142 4.70265 4.71001 4.75502 4.81507 4.85631 5.01146 5.11632 5.13966 5.16602 5.21016 5.29020 5.38833 5.51866 5.58017 5.73007 5.85058 5.96681 6.28014 6.54755 6.62102 6.80992 6.99487 7.12613 7.19439 7.48697 8.93252 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.028270 B = 0.005046 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.224112 B = 5547.529542 C = 5893.627152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.406 3.594 3 O -0.511 6.511 4 C -0.229 4.229 5 C -0.120 4.120 6 C 0.149 3.851 7 N -0.629 5.629 8 C 0.103 3.897 9 C 0.273 3.727 10 H 0.025 0.975 11 C -0.135 4.135 12 C -0.534 4.534 13 H 0.051 0.949 14 C 0.020 3.980 15 N -0.915 5.915 16 Si 0.953 3.047 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.278 1.278 20 C -0.124 4.124 21 C -0.167 4.167 22 C 0.206 3.794 23 N -0.864 5.864 24 H 0.095 0.905 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.152 0.848 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.022 0.978 32 H 0.065 0.935 33 H 0.034 0.966 34 H 0.263 0.737 35 H 0.112 0.888 36 H 0.137 0.863 37 H 0.407 0.593 38 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.599 13.141 -1.556 14.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.291 3.709 3 O -0.392 6.392 4 C -0.236 4.236 5 C -0.144 4.144 6 C 0.046 3.954 7 N -0.340 5.340 8 C -0.040 4.040 9 C 0.170 3.830 10 H 0.042 0.958 11 C -0.194 4.194 12 C -0.572 4.572 13 H 0.069 0.931 14 C -0.179 4.179 15 N -0.555 5.555 16 Si 0.779 3.221 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.204 1.204 20 C -0.146 4.146 21 C -0.190 4.190 22 C 0.097 3.903 23 N -0.414 5.414 24 H 0.114 0.886 25 H 0.123 0.877 26 H 0.124 0.876 27 H 0.169 0.831 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.130 0.870 36 H 0.155 0.845 37 H 0.246 0.754 38 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -4.355 13.336 -1.584 14.118 hybrid contribution 0.571 -0.934 0.729 1.315 sum -3.784 12.402 -0.854 12.995 Atomic orbital electron populations 1.22206 0.91043 1.06070 1.05707 1.22613 0.93241 0.86246 0.68816 1.90175 1.72002 1.35280 1.41727 1.19849 0.92152 0.95088 1.16485 1.20835 1.00093 0.88798 1.04663 1.17909 0.91372 0.86854 0.99269 1.46851 1.06692 1.02702 1.77749 1.21456 0.80392 1.02078 1.00054 1.18494 0.91143 0.79918 0.93395 0.95766 1.21918 0.99653 1.01383 0.96420 1.21674 1.33317 1.03183 0.99070 0.93108 1.25576 0.94871 0.98181 0.99287 1.69972 1.34883 1.18909 1.31690 0.85698 0.78317 0.77784 0.80326 1.19610 1.20987 1.20366 1.21008 0.93328 0.98274 1.02039 1.20591 0.99988 0.90196 1.08206 1.17893 0.90414 0.87319 0.94720 1.42951 1.15111 1.06619 1.76749 0.88590 0.87654 0.87650 0.83066 0.93542 0.92774 0.90819 0.95928 0.91604 0.94717 0.92780 0.86998 0.84483 0.75406 0.77220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.31 10.19 71.24 0.73 -2.58 16 2 C 0.41 10.54 7.20 27.88 0.20 10.74 16 3 O -0.51 -15.10 14.41 -3.16 -0.05 -15.14 16 4 C -0.23 -6.86 5.88 -20.06 -0.12 -6.98 16 5 C -0.12 -3.66 8.54 22.71 0.19 -3.47 16 6 C 0.15 5.60 6.53 38.08 0.25 5.85 16 7 N -0.63 -25.45 2.90 -702.25 -2.03 -27.49 16 8 C 0.10 3.41 8.92 127.77 1.14 4.55 16 9 C 0.27 13.16 2.55 44.24 0.11 13.27 16 10 H 0.02 1.29 5.36 -2.39 -0.01 1.28 16 11 C -0.13 -6.28 8.91 71.98 0.64 -5.64 16 12 C -0.53 -27.99 8.04 25.60 0.21 -27.79 16 13 H 0.05 2.68 7.61 -2.91 -0.02 2.66 16 14 C 0.02 1.08 5.30 84.66 0.45 1.53 16 15 N -0.92 -50.38 11.32 21.45 0.24 -50.14 16 16 Si 0.95 42.33 29.54 68.60 2.03 44.35 16 17 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 20 C -0.12 -4.72 9.26 22.43 0.21 -4.52 16 21 C -0.17 -5.41 9.89 22.36 0.22 -5.19 16 22 C 0.21 6.34 6.77 38.75 0.26 6.61 16 23 N -0.86 -22.46 8.81 -50.76 -0.45 -22.90 16 24 H 0.10 1.43 5.61 -2.39 -0.01 1.42 16 25 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.11 1.50 8.14 -2.39 -0.02 1.49 16 27 H 0.15 3.71 4.18 -2.91 -0.01 3.70 16 28 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.05 1.95 7.32 -2.39 -0.02 1.94 16 30 H 0.07 1.99 6.46 -2.39 -0.02 1.97 16 31 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 3.40 6.07 -2.39 -0.01 3.38 16 33 H 0.03 1.52 7.58 -2.39 -0.02 1.50 16 34 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 35 H 0.11 4.76 5.80 -2.91 -0.02 4.74 16 36 H 0.14 3.79 8.06 -2.92 -0.02 3.76 16 37 H 0.41 10.94 5.53 -92.80 -0.51 10.43 16 38 H 0.40 8.28 8.87 -92.70 -0.82 7.46 16 Total: -1.00 -60.61 305.61 4.00 -56.61 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: -0.23 Total: 28.33 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: 4.49 Total: -13.62 kcal Atomic # 7 Polarization: -98.29 SS G_CDS: -2.24 Total: -100.53 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.05 Total: -15.14 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Total: -60.61 4.00 -56.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228244894.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.896 kcal (2) G-P(sol) polarization free energy of solvation -60.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds