Wall clock time and date at job start Mon Mar 30 2020 07:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46496 * 109.47006 * 2 1 4 4 C 1.46504 * 120.00097 * 89.99632 * 3 2 1 5 5 C 1.50694 * 109.47266 * 270.00031 * 4 3 2 6 6 H 1.07998 * 120.00367 * 359.97438 * 5 4 3 7 7 C 1.37886 * 119.99805 * 179.72453 * 5 4 3 8 8 N 1.31511 * 120.00066 * 0.27258 * 7 5 4 9 9 Si 1.86801 * 119.99620 * 180.27627 * 7 5 4 10 10 H 1.48495 * 109.47406 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46961 * 120.00049 * 9 7 5 12 12 H 1.48499 * 109.47027 * 239.99827 * 9 7 5 13 13 C 1.38927 * 120.00269 * 269.99675 * 3 2 1 14 14 C 1.39568 * 119.83689 * 179.72249 * 13 3 2 15 15 C 1.36300 * 120.43718 * 179.75442 * 14 13 3 16 16 C 1.40273 * 120.09343 * 0.52665 * 15 14 13 17 17 C 1.46267 * 120.16646 * 179.71224 * 16 15 14 18 18 C 1.50698 * 119.99534 * 5.88744 * 17 16 15 19 19 O 1.21364 * 120.00128 * 185.88215 * 17 16 15 20 20 C 1.40932 * 119.67207 * 359.73476 * 16 15 14 21 21 N 1.38739 * 120.21290 * 180.02562 * 20 16 15 22 22 C 1.38576 * 119.56650 * 0.02562 * 20 16 15 23 23 H 1.09000 * 109.47142 * 300.00281 * 1 2 3 24 24 H 1.08998 * 109.47116 * 59.99988 * 1 2 3 25 25 H 1.08999 * 109.46997 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47142 * 239.99719 * 2 1 3 27 27 H 1.08999 * 109.46811 * 119.99565 * 2 1 3 28 28 H 1.09007 * 109.46956 * 149.99658 * 4 3 2 29 29 H 1.09004 * 109.47092 * 29.99990 * 4 3 2 30 30 H 0.96996 * 119.99678 * 179.97438 * 8 7 5 31 31 H 1.07998 * 119.78328 * 0.02562 * 14 13 3 32 32 H 1.07996 * 119.95269 * 180.23261 * 15 14 13 33 33 H 1.09005 * 109.47436 * 5.22115 * 18 17 16 34 34 H 1.09003 * 109.47412 * 125.22542 * 18 17 16 35 35 H 1.09004 * 109.46881 * 245.22046 * 18 17 16 36 36 H 0.96995 * 119.99467 * 174.62482 * 21 20 16 37 37 H 0.97002 * 120.00313 * 354.62436 * 21 20 16 38 38 H 1.08003 * 120.05094 * 180.02562 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 1.2688 5 6 1.0066 2.7822 1.7037 6 1 0.1158 2.7254 1.0957 7 6 0.9933 3.5006 2.8806 8 7 2.0782 3.5703 3.6207 9 14 -0.5656 4.3748 3.4236 10 1 -1.6379 4.1420 2.4230 11 1 -0.9964 3.8451 4.7423 12 1 -0.3021 5.8318 3.5375 13 6 2.2499 2.0361 -1.2031 14 6 2.7096 3.3539 -1.1991 15 6 2.9456 4.0065 -2.3722 16 6 2.7168 3.3592 -3.5955 17 6 2.9636 4.0601 -4.8553 18 6 3.5892 5.4310 -4.8448 19 8 2.6646 3.5376 -5.9091 20 6 2.2475 2.0304 -3.6046 21 7 2.0179 1.3793 -4.8080 22 6 2.0169 1.3784 -2.4037 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.0644 2.7985 1.1384 29 1 2.5505 1.3452 2.0285 30 1 2.0689 4.0759 4.4484 31 1 2.8836 3.8585 -0.2602 32 1 3.3048 5.0249 -2.3599 33 1 3.8709 5.6941 -3.8252 34 1 4.4763 5.4305 -5.4782 35 1 2.8729 6.1602 -5.2234 36 1 1.7701 0.4415 -4.8124 37 1 2.1051 1.8619 -5.6449 38 1 1.6576 0.3599 -2.4015 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228270588.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:20 Heat of formation + Delta-G solvation = -8.654982 kcal Electronic energy + Delta-G solvation = -19687.494430 eV Core-core repulsion = 16722.757061 eV Total energy + Delta-G solvation = -2964.737369 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.82144 -38.29998 -36.11856 -33.97850 -32.89132 -31.28919 -30.06112 -29.04845 -27.66224 -26.51309 -23.43691 -23.10236 -21.15529 -20.60679 -19.27900 -17.12518 -16.65013 -16.44311 -15.78033 -15.05737 -14.75555 -14.65415 -14.38457 -14.16923 -13.55170 -13.53020 -12.94820 -12.62565 -12.45841 -12.33567 -11.95559 -11.82571 -11.79337 -11.43789 -11.40713 -11.03365 -10.85866 -10.60391 -10.45142 -10.32225 -9.88416 -9.63105 -9.18651 -8.92843 -8.55649 -7.26600 -6.63284 -6.11589 -4.22674 1.47706 2.31751 3.01566 3.22028 3.30852 3.35293 3.91854 4.33018 4.38100 4.55403 4.63634 5.16470 5.22241 5.36212 5.45071 5.57168 5.73734 5.80897 5.88629 5.93782 5.99176 6.10068 6.15182 6.22009 6.29786 6.39805 6.70126 6.78081 6.90798 6.94386 7.15352 7.25929 7.32025 7.75931 7.82589 8.01657 8.07029 8.13979 8.32233 8.37038 8.85573 9.44041 10.90136 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.021112 B = 0.005718 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.963565 B = 4895.825923 C = 5661.422648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.119 3.881 3 N -0.591 5.591 4 C 0.243 3.757 5 C -0.529 4.529 6 H 0.063 0.937 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.895 3.105 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.282 1.282 13 C 0.316 3.684 14 C -0.241 4.241 15 C 0.008 3.992 16 C -0.342 4.342 17 C 0.409 3.591 18 C -0.199 4.199 19 O -0.515 6.515 20 C 0.322 3.678 21 N -0.863 5.863 22 C -0.326 4.326 23 H 0.073 0.927 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.041 0.959 29 H 0.033 0.967 30 H 0.264 0.736 31 H 0.136 0.864 32 H 0.122 0.878 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.387 0.613 37 H 0.410 0.590 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.661 -2.517 -10.746 11.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.005 4.005 3 N -0.291 5.291 4 C 0.124 3.876 5 C -0.568 4.568 6 H 0.081 0.919 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.723 3.277 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.208 1.208 13 C 0.203 3.797 14 C -0.264 4.264 15 C -0.011 4.011 16 C -0.350 4.350 17 C 0.297 3.703 18 C -0.256 4.256 19 O -0.398 6.398 20 C 0.211 3.789 21 N -0.410 5.410 22 C -0.355 4.355 23 H 0.092 0.908 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.153 0.847 32 H 0.140 0.860 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.214 0.786 37 H 0.251 0.749 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.572 -2.747 -10.869 11.320 hybrid contribution -0.996 0.341 0.402 1.127 sum 0.576 -2.406 -10.467 10.755 Atomic orbital electron populations 1.22210 0.96471 1.00668 1.03421 1.21338 0.94407 0.83377 1.01371 1.47342 1.64479 1.12285 1.05034 1.19447 0.97162 0.92572 0.78465 1.21572 0.97843 1.31067 1.06280 0.91910 1.24949 0.96436 0.96298 0.96312 1.69930 1.27491 1.41609 1.14267 0.86484 0.83293 0.79479 0.78490 1.19708 1.20989 1.20822 1.17856 0.85738 0.90626 0.85514 1.20482 1.12027 0.94711 0.99146 1.20627 0.92015 0.97803 0.90703 1.19325 1.24978 0.96211 0.94482 1.21932 0.73458 0.87465 0.87478 1.22169 1.02309 0.96623 1.04466 1.90112 1.47138 1.67753 1.34819 1.17528 0.85764 0.89641 0.85981 1.43312 1.76451 1.13700 1.07524 1.19898 1.23605 1.02028 0.89967 0.90841 0.92905 0.93120 0.91841 0.91092 0.94159 0.94912 0.92656 0.84652 0.86028 0.89828 0.89832 0.89578 0.78650 0.74854 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.73 10.24 37.16 0.38 -2.35 16 2 C 0.12 1.97 5.90 -4.04 -0.02 1.95 16 3 N -0.59 -11.76 2.57 -173.16 -0.44 -12.20 16 4 C 0.24 5.70 4.93 -5.19 -0.03 5.68 16 5 C -0.53 -13.61 8.92 -34.44 -0.31 -13.92 16 6 H 0.06 1.66 7.42 -52.49 -0.39 1.27 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -24.66 13.29 55.43 0.74 -23.93 16 9 Si 0.89 20.65 29.54 -169.99 -5.02 15.62 16 10 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 C 0.32 6.11 6.55 -83.92 -0.55 5.56 16 14 C -0.24 -4.61 9.12 -39.78 -0.36 -4.97 16 15 C 0.01 0.14 9.33 -39.52 -0.37 -0.23 16 16 C -0.34 -5.72 5.89 -104.89 -0.62 -6.34 16 17 C 0.41 6.26 7.18 -31.08 -0.22 6.04 16 18 C -0.20 -2.24 10.16 36.00 0.37 -1.88 16 19 O -0.52 -8.76 14.39 5.48 0.08 -8.68 16 20 C 0.32 5.45 6.76 -83.59 -0.57 4.89 16 21 N -0.86 -12.51 8.92 32.56 0.29 -12.22 16 22 C -0.33 -5.65 9.03 -39.23 -0.35 -6.00 16 23 H 0.07 1.37 7.26 -51.93 -0.38 0.99 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.92 6.16 -51.93 -0.32 0.60 16 27 H 0.07 1.14 7.89 -51.93 -0.41 0.73 16 28 H 0.04 1.00 6.17 -51.93 -0.32 0.68 16 29 H 0.03 0.81 7.89 -51.93 -0.41 0.40 16 30 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.14 2.81 6.10 -52.49 -0.32 2.49 16 32 H 0.12 1.63 6.02 -52.49 -0.32 1.32 16 33 H 0.08 0.84 5.68 -51.93 -0.30 0.55 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.39 4.57 8.84 -40.82 -0.36 4.21 16 37 H 0.41 6.19 5.35 -40.96 -0.22 5.97 16 38 H 0.12 1.85 6.10 -52.48 -0.32 1.53 16 LS Contribution 311.25 15.07 4.69 4.69 Total: -1.00 -28.64 311.25 -7.30 -35.94 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -4.88 Total: 10.80 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -2.75 Total: -10.02 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: 0.58 Total: -48.35 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.08 Total: -8.68 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.64 -7.30 -35.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228270588.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.283 kcal (2) G-P(sol) polarization free energy of solvation -28.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds