Wall clock time and date at job start Mon Mar 30 2020 07:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46496 * 109.47006 * 2 1 4 4 C 1.46504 * 120.00097 * 89.99632 * 3 2 1 5 5 C 1.50694 * 109.47266 * 270.00031 * 4 3 2 6 6 H 1.07998 * 120.00367 * 359.97438 * 5 4 3 7 7 C 1.37886 * 119.99805 * 179.72453 * 5 4 3 8 8 N 1.31511 * 120.00066 * 0.27258 * 7 5 4 9 9 Si 1.86801 * 119.99620 * 180.27627 * 7 5 4 10 10 H 1.48495 * 109.47406 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46961 * 120.00049 * 9 7 5 12 12 H 1.48499 * 109.47027 * 239.99827 * 9 7 5 13 13 C 1.38927 * 120.00269 * 269.99675 * 3 2 1 14 14 C 1.39568 * 119.83689 * 179.72249 * 13 3 2 15 15 C 1.36300 * 120.43718 * 179.75442 * 14 13 3 16 16 C 1.40273 * 120.09343 * 0.52665 * 15 14 13 17 17 C 1.46267 * 120.16646 * 179.71224 * 16 15 14 18 18 C 1.50698 * 119.99534 * 5.88744 * 17 16 15 19 19 O 1.21364 * 120.00128 * 185.88215 * 17 16 15 20 20 C 1.40932 * 119.67207 * 359.73476 * 16 15 14 21 21 N 1.38739 * 120.21290 * 180.02562 * 20 16 15 22 22 C 1.38576 * 119.56650 * 0.02562 * 20 16 15 23 23 H 1.09000 * 109.47142 * 300.00281 * 1 2 3 24 24 H 1.08998 * 109.47116 * 59.99988 * 1 2 3 25 25 H 1.08999 * 109.46997 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47142 * 239.99719 * 2 1 3 27 27 H 1.08999 * 109.46811 * 119.99565 * 2 1 3 28 28 H 1.09007 * 109.46956 * 149.99658 * 4 3 2 29 29 H 1.09004 * 109.47092 * 29.99990 * 4 3 2 30 30 H 0.96996 * 119.99678 * 179.97438 * 8 7 5 31 31 H 1.07998 * 119.78328 * 0.02562 * 14 13 3 32 32 H 1.07996 * 119.95269 * 180.23261 * 15 14 13 33 33 H 1.09005 * 109.47436 * 5.22115 * 18 17 16 34 34 H 1.09003 * 109.47412 * 125.22542 * 18 17 16 35 35 H 1.09004 * 109.46881 * 245.22046 * 18 17 16 36 36 H 0.96995 * 119.99467 * 174.62482 * 21 20 16 37 37 H 0.97002 * 120.00313 * 354.62436 * 21 20 16 38 38 H 1.08003 * 120.05094 * 180.02562 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 1.2688 5 6 1.0066 2.7822 1.7037 6 1 0.1158 2.7254 1.0957 7 6 0.9933 3.5006 2.8806 8 7 2.0782 3.5703 3.6207 9 14 -0.5656 4.3748 3.4236 10 1 -1.6379 4.1420 2.4230 11 1 -0.9964 3.8451 4.7423 12 1 -0.3021 5.8318 3.5375 13 6 2.2499 2.0361 -1.2031 14 6 2.7096 3.3539 -1.1991 15 6 2.9456 4.0065 -2.3722 16 6 2.7168 3.3592 -3.5955 17 6 2.9636 4.0601 -4.8553 18 6 3.5892 5.4310 -4.8448 19 8 2.6646 3.5376 -5.9091 20 6 2.2475 2.0304 -3.6046 21 7 2.0179 1.3793 -4.8080 22 6 2.0169 1.3784 -2.4037 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.0644 2.7985 1.1384 29 1 2.5505 1.3452 2.0285 30 1 2.0689 4.0759 4.4484 31 1 2.8836 3.8585 -0.2602 32 1 3.3048 5.0249 -2.3599 33 1 3.8709 5.6941 -3.8252 34 1 4.4763 5.4305 -5.4782 35 1 2.8729 6.1602 -5.2234 36 1 1.7701 0.4415 -4.8124 37 1 2.1051 1.8619 -5.6449 38 1 1.6576 0.3599 -2.4015 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228270588.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:20 Heat of formation + Delta-G solvation = -25.132042 kcal Electronic energy + Delta-G solvation = -19688.208929 eV Core-core repulsion = 16722.757061 eV Total energy + Delta-G solvation = -2965.451868 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.13042 -39.65939 -37.52480 -35.26638 -34.84058 -32.54477 -31.57617 -30.29490 -29.05010 -28.13224 -24.90786 -24.74714 -22.51225 -21.98592 -20.57159 -18.59323 -18.47894 -17.82190 -17.20006 -16.57168 -16.26708 -15.81800 -15.71799 -15.55423 -15.08959 -14.86726 -14.28234 -14.10186 -13.99872 -13.71031 -13.36817 -13.24947 -12.88062 -12.85258 -12.82224 -12.72885 -12.59694 -12.19259 -11.91955 -11.87297 -11.44889 -11.38085 -10.58762 -10.42527 -10.39435 -8.60324 -8.31112 -7.91567 -6.30862 0.17578 0.94632 1.38315 1.41433 1.51969 1.73416 2.34918 2.51897 3.11253 3.15382 3.18788 3.51006 3.97967 4.14537 4.37118 4.46221 4.52963 4.58884 4.62763 4.73868 4.75171 4.80714 4.86516 4.98706 5.06072 5.13449 5.21690 5.24744 5.43371 5.47139 5.55544 5.73473 5.75343 5.93101 6.10942 6.49302 6.56300 6.80276 6.86626 6.90847 7.16913 7.39651 8.87676 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.021112 B = 0.005718 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.963565 B = 4895.825923 C = 5661.422648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.115 3.885 3 N -0.602 5.602 4 C 0.260 3.740 5 C -0.530 4.530 6 H 0.052 0.948 7 C 0.016 3.984 8 N -0.925 5.925 9 Si 0.955 3.045 10 H -0.272 1.272 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.296 3.704 14 C -0.270 4.270 15 C 0.022 3.978 16 C -0.351 4.351 17 C 0.407 3.593 18 C -0.194 4.194 19 O -0.533 6.533 20 C 0.312 3.688 21 N -0.852 5.852 22 C -0.322 4.322 23 H 0.041 0.959 24 H 0.045 0.955 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.021 0.979 29 H 0.014 0.986 30 H 0.266 0.734 31 H 0.110 0.890 32 H 0.152 0.848 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.400 0.600 37 H 0.410 0.590 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.220 -2.321 -12.483 12.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.008 4.008 3 N -0.305 5.305 4 C 0.139 3.861 5 C -0.569 4.569 6 H 0.070 0.930 7 C -0.183 4.183 8 N -0.566 5.566 9 Si 0.780 3.220 10 H -0.197 1.197 11 H -0.204 1.204 12 H -0.204 1.204 13 C 0.184 3.816 14 C -0.293 4.293 15 C 0.002 3.998 16 C -0.359 4.359 17 C 0.295 3.705 18 C -0.250 4.250 19 O -0.416 6.416 20 C 0.199 3.801 21 N -0.399 5.399 22 C -0.350 4.350 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.102 0.898 26 H 0.108 0.892 27 H 0.090 0.910 28 H 0.039 0.961 29 H 0.032 0.968 30 H 0.075 0.925 31 H 0.128 0.872 32 H 0.169 0.831 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.229 0.771 37 H 0.251 0.749 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.124 -2.577 -12.649 12.958 hybrid contribution -0.823 0.273 0.783 1.168 sum 0.301 -2.304 -11.866 12.091 Atomic orbital electron populations 1.22111 0.96075 1.02205 1.01424 1.21538 0.94686 0.81933 1.02656 1.47171 1.65951 1.13371 1.03976 1.18957 0.95651 0.91659 0.79845 1.21740 0.98131 1.30935 1.06062 0.92963 1.25668 0.99078 0.97084 0.96511 1.70025 1.29198 1.42597 1.14744 0.85555 0.79912 0.78450 0.78048 1.19683 1.20413 1.20398 1.18073 0.86656 0.91012 0.85845 1.20432 1.14453 0.95324 0.99108 1.20878 0.90362 0.98873 0.89656 1.19696 1.24365 0.96465 0.95364 1.22356 0.72908 0.88835 0.86368 1.22184 1.02954 0.94040 1.05855 1.90110 1.47814 1.68553 1.35150 1.17738 0.85685 0.90108 0.86550 1.43266 1.75561 1.14416 1.06639 1.19980 1.23108 1.02654 0.89303 0.94010 0.93540 0.89779 0.89237 0.91037 0.96142 0.96817 0.92510 0.87248 0.83068 0.88583 0.88185 0.88003 0.77073 0.74882 0.84786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.03 10.24 71.98 0.74 -4.30 16 2 C 0.11 3.74 5.90 86.38 0.51 4.25 16 3 N -0.60 -24.46 2.57 -701.76 -1.80 -26.26 16 4 C 0.26 12.75 4.93 85.63 0.42 13.17 16 5 C -0.53 -28.08 8.92 25.60 0.23 -27.85 16 6 H 0.05 2.83 7.42 -2.91 -0.02 2.81 16 7 C 0.02 0.85 5.46 84.66 0.46 1.31 16 8 N -0.93 -52.25 13.29 21.45 0.28 -51.96 16 9 Si 0.95 42.82 29.54 68.60 2.03 44.85 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 11 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 12 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 13 C 0.30 11.49 6.55 38.49 0.25 11.74 16 14 C -0.27 -10.51 9.12 22.14 0.20 -10.30 16 15 C 0.02 0.69 9.33 22.31 0.21 0.90 16 16 C -0.35 -11.11 5.89 -20.04 -0.12 -11.23 16 17 C 0.41 11.42 7.18 27.77 0.20 11.62 16 18 C -0.19 -3.71 10.16 71.24 0.72 -2.98 16 19 O -0.53 -16.86 14.39 -3.29 -0.05 -16.91 16 20 C 0.31 10.04 6.76 38.79 0.26 10.30 16 21 N -0.85 -22.88 8.92 -50.89 -0.45 -23.33 16 22 C -0.32 -10.77 9.03 22.50 0.20 -10.56 16 23 H 0.04 1.56 7.26 -2.39 -0.02 1.55 16 24 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.09 2.44 6.16 -2.39 -0.01 2.42 16 27 H 0.07 2.30 7.89 -2.39 -0.02 2.28 16 28 H 0.02 1.08 6.17 -2.38 -0.01 1.07 16 29 H 0.01 0.72 7.89 -2.38 -0.02 0.70 16 30 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 31 H 0.11 4.79 6.10 -2.91 -0.02 4.77 16 32 H 0.15 3.74 6.02 -2.91 -0.02 3.72 16 33 H 0.10 1.59 5.68 -2.38 -0.01 1.58 16 34 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.40 8.50 8.84 -92.71 -0.82 7.68 16 37 H 0.41 11.50 5.35 -94.90 -0.51 10.99 16 38 H 0.13 3.92 6.10 -2.91 -0.02 3.90 16 Total: -1.00 -62.32 311.25 4.07 -58.25 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: -0.23 Total: 29.30 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: 4.29 Total: -13.93 kcal Atomic # 7 Polarization: -99.58 SS G_CDS: -1.97 Total: -101.55 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.05 Total: -16.91 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -62.32 4.07 -58.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228270588.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.115 kcal (2) G-P(sol) polarization free energy of solvation -62.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds