Wall clock time and date at job start Mon Mar 30 2020 06:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21371 * 120.00298 * 2 1 4 4 C 1.46264 * 120.00086 * 180.02562 * 2 1 3 5 5 C 1.40277 * 120.16440 * 5.84656 * 4 2 1 6 6 C 1.36296 * 120.09495 * 179.97438 * 5 4 2 7 7 C 1.39572 * 120.44054 * 359.97438 * 6 5 4 8 8 N 1.38928 * 119.83597 * 179.97438 * 7 6 5 9 9 C 1.46503 * 120.00252 * 5.70057 * 8 7 6 10 10 C 1.46506 * 120.00089 * 185.69790 * 8 7 6 11 11 H 1.08996 * 109.46996 * 355.19251 * 10 8 7 12 12 C 1.52995 * 109.47004 * 115.19115 * 10 8 7 13 13 C 1.50702 * 109.46869 * 235.19194 * 10 8 7 14 14 H 1.08000 * 120.00543 * 0.02562 * 13 10 8 15 15 C 1.37883 * 119.99743 * 179.97438 * 13 10 8 16 16 N 1.31511 * 120.00138 * 179.72477 * 15 13 10 17 17 Si 1.86799 * 119.99883 * 0.02562 * 15 13 10 18 18 H 1.48496 * 109.47527 * 89.99819 * 17 15 13 19 19 H 1.48499 * 109.47050 * 209.99833 * 17 15 13 20 20 H 1.48506 * 109.47064 * 329.99551 * 17 15 13 21 21 C 1.38858 * 120.33140 * 0.27212 * 7 6 5 22 22 C 1.38591 * 119.89033 * 359.45697 * 21 7 6 23 23 N 1.38739 * 120.21423 * 180.29083 * 22 21 7 24 24 H 1.09007 * 109.47118 * 239.99676 * 1 2 3 25 25 H 1.08996 * 109.47325 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46892 * 120.00036 * 1 2 3 27 27 H 1.07996 * 119.95187 * 359.95530 * 5 4 2 28 28 H 1.07999 * 119.77970 * 179.97438 * 6 5 4 29 29 H 1.08992 * 109.46997 * 270.00204 * 9 8 7 30 30 H 1.09000 * 109.46427 * 29.99711 * 9 8 7 31 31 H 1.08995 * 109.47521 * 149.99163 * 9 8 7 32 32 H 1.08995 * 109.47293 * 300.00132 * 12 10 8 33 33 H 1.09010 * 109.47059 * 60.00424 * 12 10 8 34 34 H 1.09004 * 109.47355 * 179.97438 * 12 10 8 35 35 H 0.96994 * 120.00243 * 180.02562 * 16 15 13 36 36 H 1.07993 * 120.05698 * 179.70205 * 21 7 6 37 37 H 0.97002 * 119.99827 * 205.08837 * 23 22 21 38 38 H 0.97001 * 120.00161 * 25.08724 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1139 1.0511 0.0000 4 6 2.2383 -1.2667 -0.0006 5 6 1.5459 -2.4803 -0.1247 6 6 2.2289 -3.6598 -0.1255 7 6 3.6192 -3.6720 -0.0040 8 7 4.3027 -4.8815 -0.0058 9 6 3.5805 -6.1306 -0.2599 10 6 5.7456 -4.9079 0.2463 11 1 6.1190 -3.8872 0.3277 12 6 6.0217 -5.6575 1.5511 13 6 6.4417 -5.6081 -0.8923 14 1 5.8669 -5.9944 -1.7210 15 6 7.8126 -5.7547 -0.8765 16 7 8.4196 -6.3705 -1.8674 17 14 8.8070 -5.0860 0.5565 18 1 8.9320 -6.1319 1.6032 19 1 10.1591 -4.6966 0.0818 20 1 8.1203 -3.8976 1.1237 21 6 4.3223 -2.4815 0.1250 22 6 3.6422 -1.2739 0.1219 23 7 4.3385 -0.0802 0.2443 24 1 -0.3634 -0.5139 0.8900 25 1 -0.3634 1.0276 0.0005 26 1 -0.3633 -0.5139 -0.8900 27 1 0.4701 -2.4801 -0.2193 28 1 1.6906 -4.5912 -0.2210 29 1 3.2236 -6.5423 0.6840 30 1 2.7315 -5.9326 -0.9141 31 1 4.2491 -6.8459 -0.7388 32 1 5.5182 -5.1512 2.3746 33 1 5.6483 -6.6785 1.4697 34 1 7.0953 -5.6777 1.7385 35 1 9.3839 -6.4739 -1.8562 36 1 5.3976 -2.4963 0.2237 37 1 3.8950 0.7057 0.6003 38 1 5.2688 -0.0313 -0.0261 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228274295.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:20 Heat of formation + Delta-G solvation = 5.536026 kcal Electronic energy + Delta-G solvation = -19757.210482 eV Core-core repulsion = 16793.088482 eV Total energy + Delta-G solvation = -2964.122000 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.89230 -38.40985 -36.34217 -34.19038 -32.85693 -31.19491 -30.19813 -29.27916 -27.71111 -25.66769 -25.22939 -23.06552 -21.21011 -20.26002 -19.22291 -17.43237 -16.57347 -16.53540 -15.91884 -15.21405 -14.96883 -14.82001 -14.42945 -14.16473 -13.65926 -13.47223 -13.04042 -12.86657 -12.46220 -12.37525 -12.21900 -12.00886 -11.93001 -11.75485 -11.58210 -11.32446 -10.89382 -10.59194 -10.35202 -10.05206 -9.71582 -9.47548 -9.26360 -8.99213 -8.73415 -7.37062 -6.69063 -6.25450 -4.27148 1.35580 2.10906 2.89925 3.13827 3.23520 3.27233 3.80526 4.22551 4.34795 4.38447 4.52645 5.04978 5.13663 5.23751 5.45386 5.54820 5.66625 5.72730 5.88660 5.95027 6.00702 6.03580 6.08921 6.20358 6.31627 6.35429 6.44185 6.61769 6.68726 6.77709 6.86967 6.96110 7.13584 7.43389 7.78911 7.91470 8.00291 8.11739 8.25704 8.43087 8.76995 9.34170 10.87109 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.027676 B = 0.005489 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.464074 B = 5099.494963 C = 5683.797054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.405 3.595 3 O -0.503 6.503 4 C -0.332 4.332 5 C 0.012 3.988 6 C -0.262 4.262 7 C 0.305 3.695 8 N -0.584 5.584 9 C 0.090 3.910 10 C 0.232 3.768 11 H 0.054 0.946 12 C -0.163 4.163 13 C -0.532 4.532 14 H 0.081 0.919 15 C 0.077 3.923 16 N -0.891 5.891 17 Si 0.885 3.115 18 H -0.276 1.276 19 H -0.294 1.294 20 H -0.267 1.267 21 C -0.301 4.301 22 C 0.318 3.682 23 N -0.865 5.865 24 H 0.087 0.913 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.034 0.966 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.267 0.733 36 H 0.130 0.870 37 H 0.407 0.593 38 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.693 6.399 5.443 15.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.290 3.710 3 O -0.384 6.384 4 C -0.340 4.340 5 C -0.008 4.008 6 C -0.285 4.285 7 C 0.192 3.808 8 N -0.284 5.284 9 C -0.053 4.053 10 C 0.129 3.871 11 H 0.072 0.928 12 C -0.221 4.221 13 C -0.570 4.570 14 H 0.099 0.901 15 C -0.127 4.127 16 N -0.528 5.528 17 Si 0.714 3.286 18 H -0.203 1.203 19 H -0.221 1.221 20 H -0.192 1.192 21 C -0.330 4.330 22 C 0.208 3.792 23 N -0.409 5.409 24 H 0.106 0.894 25 H 0.093 0.907 26 H 0.106 0.894 27 H 0.138 0.862 28 H 0.138 0.862 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.147 0.853 37 H 0.243 0.757 38 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -12.131 6.608 5.368 14.820 hybrid contribution 0.904 0.252 0.673 1.155 sum -11.227 6.860 6.041 14.478 Atomic orbital electron populations 1.22188 0.95182 1.04004 1.03984 1.21932 0.90951 0.87680 0.70419 1.90304 1.71517 1.34914 1.41655 1.19515 0.92629 0.94529 1.27297 1.20513 0.98415 0.90811 0.91064 1.20199 0.92281 0.98455 1.17585 1.17907 0.90804 0.86041 0.86083 1.46888 1.08601 1.03074 1.69837 1.21631 0.96895 0.87114 0.99653 1.19388 0.76454 0.97699 0.93516 0.92840 1.22484 1.00074 1.01313 0.98208 1.21174 0.92276 1.38076 1.05451 0.90092 1.24883 0.97513 0.94412 0.95878 1.69864 1.09910 1.41599 1.31454 0.86910 0.79363 0.79866 0.82413 1.20320 1.22085 1.19162 1.20281 1.00280 0.89696 1.22709 1.17515 0.89689 0.86171 0.85834 1.42784 1.14796 1.11312 1.71996 0.89439 0.90669 0.89436 0.86209 0.86188 0.94119 0.92306 0.89699 0.94705 0.92514 0.93249 0.92299 0.85261 0.75748 0.77869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.91 8.99 36.00 0.32 -1.59 16 2 C 0.40 5.75 7.18 -31.09 -0.22 5.53 16 3 O -0.50 -8.31 14.55 5.48 0.08 -8.23 16 4 C -0.33 -5.13 5.89 -104.89 -0.62 -5.75 16 5 C 0.01 0.16 9.40 -39.51 -0.37 -0.21 16 6 C -0.26 -4.03 9.07 -39.78 -0.36 -4.39 16 7 C 0.30 5.59 6.53 -83.92 -0.55 5.04 16 8 N -0.58 -11.37 2.87 -173.37 -0.50 -11.87 16 9 C 0.09 1.50 9.20 59.85 0.55 2.05 16 10 C 0.23 5.15 2.16 -69.08 -0.15 5.00 16 11 H 0.05 1.23 4.32 -51.93 -0.22 1.01 16 12 C -0.16 -3.34 8.74 37.15 0.32 -3.02 16 13 C -0.53 -13.93 8.54 -34.44 -0.29 -14.22 16 14 H 0.08 2.32 7.24 -52.49 -0.38 1.94 16 15 C 0.08 2.08 5.45 -17.82 -0.10 1.98 16 16 N -0.89 -25.92 13.96 55.43 0.77 -25.15 16 17 Si 0.88 20.69 24.37 -169.99 -4.14 16.55 16 18 H -0.28 -6.29 6.87 56.52 0.39 -5.90 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.27 -5.95 6.53 56.52 0.37 -5.58 16 21 C -0.30 -5.60 9.18 -39.22 -0.36 -5.96 16 22 C 0.32 5.42 6.76 -83.59 -0.57 4.86 16 23 N -0.86 -13.13 8.46 32.57 0.28 -12.85 16 24 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 26 H 0.09 0.72 7.90 -51.93 -0.41 0.31 16 27 H 0.12 1.21 6.96 -52.49 -0.37 0.85 16 28 H 0.12 1.61 6.26 -52.49 -0.33 1.28 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.85 6.42 -51.93 -0.33 0.52 16 31 H 0.08 1.56 6.66 -51.93 -0.35 1.21 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 1.12 7.79 -51.92 -0.40 0.71 16 34 H 0.05 1.06 3.27 -51.93 -0.17 0.89 16 35 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 36 H 0.13 2.54 5.70 -52.49 -0.30 2.24 16 37 H 0.41 6.08 6.14 -40.82 -0.25 5.83 16 38 H 0.39 5.35 8.91 -40.82 -0.36 4.98 16 LS Contribution 300.23 15.07 4.52 4.52 Total: -1.00 -29.92 300.23 -6.12 -36.04 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -4.75 Total: 11.66 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -2.39 Total: -10.68 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.55 Total: -49.87 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.08 Total: -8.23 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.14 Total: 16.55 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.92 -6.12 -36.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228274295.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.581 kcal (2) G-P(sol) polarization free energy of solvation -29.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds