Wall clock time and date at job start Mon Mar 30 2020 06:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21371 * 120.00298 * 2 1 4 4 C 1.46264 * 120.00086 * 180.02562 * 2 1 3 5 5 C 1.40277 * 120.16440 * 5.84656 * 4 2 1 6 6 C 1.36296 * 120.09495 * 179.97438 * 5 4 2 7 7 C 1.39572 * 120.44054 * 359.97438 * 6 5 4 8 8 N 1.38928 * 119.83597 * 179.97438 * 7 6 5 9 9 C 1.46503 * 120.00252 * 5.70057 * 8 7 6 10 10 C 1.46506 * 120.00089 * 185.69790 * 8 7 6 11 11 H 1.08996 * 109.46996 * 355.19251 * 10 8 7 12 12 C 1.52995 * 109.47004 * 115.19115 * 10 8 7 13 13 C 1.50702 * 109.46869 * 235.19194 * 10 8 7 14 14 H 1.08000 * 120.00543 * 0.02562 * 13 10 8 15 15 C 1.37883 * 119.99743 * 179.97438 * 13 10 8 16 16 N 1.31511 * 120.00138 * 179.72477 * 15 13 10 17 17 Si 1.86799 * 119.99883 * 0.02562 * 15 13 10 18 18 H 1.48496 * 109.47527 * 89.99819 * 17 15 13 19 19 H 1.48499 * 109.47050 * 209.99833 * 17 15 13 20 20 H 1.48506 * 109.47064 * 329.99551 * 17 15 13 21 21 C 1.38858 * 120.33140 * 0.27212 * 7 6 5 22 22 C 1.38591 * 119.89033 * 359.45697 * 21 7 6 23 23 N 1.38739 * 120.21423 * 180.29083 * 22 21 7 24 24 H 1.09007 * 109.47118 * 239.99676 * 1 2 3 25 25 H 1.08996 * 109.47325 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46892 * 120.00036 * 1 2 3 27 27 H 1.07996 * 119.95187 * 359.95530 * 5 4 2 28 28 H 1.07999 * 119.77970 * 179.97438 * 6 5 4 29 29 H 1.08992 * 109.46997 * 270.00204 * 9 8 7 30 30 H 1.09000 * 109.46427 * 29.99711 * 9 8 7 31 31 H 1.08995 * 109.47521 * 149.99163 * 9 8 7 32 32 H 1.08995 * 109.47293 * 300.00132 * 12 10 8 33 33 H 1.09010 * 109.47059 * 60.00424 * 12 10 8 34 34 H 1.09004 * 109.47355 * 179.97438 * 12 10 8 35 35 H 0.96994 * 120.00243 * 180.02562 * 16 15 13 36 36 H 1.07993 * 120.05698 * 179.70205 * 21 7 6 37 37 H 0.97002 * 119.99827 * 205.08837 * 23 22 21 38 38 H 0.97001 * 120.00161 * 25.08724 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1139 1.0511 0.0000 4 6 2.2383 -1.2667 -0.0006 5 6 1.5459 -2.4803 -0.1247 6 6 2.2289 -3.6598 -0.1255 7 6 3.6192 -3.6720 -0.0040 8 7 4.3027 -4.8815 -0.0058 9 6 3.5805 -6.1306 -0.2599 10 6 5.7456 -4.9079 0.2463 11 1 6.1190 -3.8872 0.3277 12 6 6.0217 -5.6575 1.5511 13 6 6.4417 -5.6081 -0.8923 14 1 5.8669 -5.9944 -1.7210 15 6 7.8126 -5.7547 -0.8765 16 7 8.4196 -6.3705 -1.8674 17 14 8.8070 -5.0860 0.5565 18 1 8.9320 -6.1319 1.6032 19 1 10.1591 -4.6966 0.0818 20 1 8.1203 -3.8976 1.1237 21 6 4.3223 -2.4815 0.1250 22 6 3.6422 -1.2739 0.1219 23 7 4.3385 -0.0802 0.2443 24 1 -0.3634 -0.5139 0.8900 25 1 -0.3634 1.0276 0.0005 26 1 -0.3633 -0.5139 -0.8900 27 1 0.4701 -2.4801 -0.2193 28 1 1.6906 -4.5912 -0.2210 29 1 3.2236 -6.5423 0.6840 30 1 2.7315 -5.9326 -0.9141 31 1 4.2491 -6.8459 -0.7388 32 1 5.5182 -5.1512 2.3746 33 1 5.6483 -6.6785 1.4697 34 1 7.0953 -5.6777 1.7385 35 1 9.3839 -6.4739 -1.8562 36 1 5.3976 -2.4963 0.2237 37 1 3.8950 0.7057 0.6003 38 1 5.2688 -0.0313 -0.0261 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228274295.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:20 Heat of formation + Delta-G solvation = -14.415917 kcal Electronic energy + Delta-G solvation = -19758.075664 eV Core-core repulsion = 16793.088482 eV Total energy + Delta-G solvation = -2964.987182 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.11315 -39.69870 -37.74178 -35.55686 -34.58704 -32.69944 -31.59340 -30.38998 -28.86717 -27.20582 -26.96030 -24.45358 -22.45485 -21.73317 -20.48505 -19.04990 -18.21761 -17.88534 -17.11403 -16.90281 -16.22226 -16.09340 -15.60246 -15.46892 -15.09057 -14.87296 -14.61435 -14.29415 -14.03900 -13.80990 -13.42047 -13.23118 -13.09029 -12.91591 -12.85959 -12.81482 -12.67098 -12.16306 -11.82165 -11.57061 -11.41945 -11.21285 -10.80556 -10.43941 -10.34637 -8.64185 -8.35856 -8.06443 -6.40490 0.16810 0.87007 1.26747 1.32845 1.41574 1.73939 2.25304 2.39430 2.99013 3.13027 3.15597 3.51609 3.98622 4.26407 4.42274 4.45392 4.49314 4.58397 4.61093 4.67956 4.76367 4.79820 4.80879 4.81981 4.98699 4.99502 5.08033 5.21259 5.31847 5.44256 5.51663 5.55931 5.65047 5.90528 6.11064 6.49540 6.60826 6.67945 6.82878 6.88292 7.08016 7.25405 8.80542 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.027676 B = 0.005489 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.464074 B = 5099.494963 C = 5683.797054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.401 3.599 3 O -0.532 6.532 4 C -0.340 4.340 5 C 0.028 3.972 6 C -0.264 4.264 7 C 0.284 3.716 8 N -0.599 5.599 9 C 0.092 3.908 10 C 0.236 3.764 11 H 0.045 0.955 12 C -0.156 4.156 13 C -0.527 4.527 14 H 0.042 0.958 15 C 0.022 3.978 16 N -0.941 5.941 17 Si 0.943 3.057 18 H -0.261 1.261 19 H -0.298 1.298 20 H -0.252 1.252 21 C -0.324 4.324 22 C 0.302 3.698 23 N -0.862 5.862 24 H 0.112 0.888 25 H 0.079 0.921 26 H 0.111 0.889 27 H 0.168 0.832 28 H 0.144 0.856 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.041 0.959 35 H 0.268 0.732 36 H 0.108 0.892 37 H 0.408 0.592 38 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.578 7.231 6.982 18.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.288 3.712 3 O -0.415 6.415 4 C -0.348 4.348 5 C 0.009 3.991 6 C -0.287 4.287 7 C 0.173 3.827 8 N -0.301 5.301 9 C -0.050 4.050 10 C 0.132 3.868 11 H 0.062 0.938 12 C -0.214 4.214 13 C -0.565 4.565 14 H 0.060 0.940 15 C -0.177 4.177 16 N -0.581 5.581 17 Si 0.770 3.230 18 H -0.187 1.187 19 H -0.226 1.226 20 H -0.176 1.176 21 C -0.353 4.353 22 C 0.191 3.809 23 N -0.406 5.406 24 H 0.130 0.870 25 H 0.098 0.902 26 H 0.129 0.871 27 H 0.185 0.815 28 H 0.161 0.839 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.125 0.875 37 H 0.244 0.756 38 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -15.057 7.459 6.921 18.173 hybrid contribution 1.671 0.083 0.109 1.677 sum -13.386 7.542 7.030 16.896 Atomic orbital electron populations 1.22195 0.91035 1.05181 1.06174 1.22521 0.93170 0.86487 0.69056 1.90301 1.72664 1.35710 1.42822 1.19953 0.92087 0.96291 1.26427 1.20972 1.00561 0.89193 0.88369 1.20476 0.90875 1.00234 1.17122 1.18222 0.92238 0.85236 0.86995 1.46771 1.07512 1.04390 1.71451 1.21691 0.96624 0.85624 1.01074 1.19096 0.78325 0.96629 0.92747 0.93751 1.22358 0.99744 1.01537 0.97783 1.21423 0.92316 1.37135 1.05629 0.93960 1.25679 0.98769 0.94830 0.98415 1.70010 1.10228 1.43956 1.33891 0.85951 0.77405 0.80090 0.79551 1.18731 1.22577 1.17587 1.20255 0.99471 0.90941 1.24596 1.17770 0.90892 0.85995 0.86213 1.42782 1.15065 1.10967 1.71792 0.86966 0.90247 0.87094 0.81503 0.83864 0.91804 0.90034 0.92559 0.92456 0.92104 0.94056 0.92330 0.87461 0.75558 0.77415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.78 8.99 71.24 0.64 -2.14 16 2 C 0.40 10.20 7.18 27.77 0.20 10.40 16 3 O -0.53 -16.72 14.55 -3.31 -0.05 -16.76 16 4 C -0.34 -9.61 5.89 -20.04 -0.12 -9.73 16 5 C 0.03 0.66 9.40 22.31 0.21 0.87 16 6 C -0.26 -7.28 9.07 22.14 0.20 -7.08 16 7 C 0.28 10.12 6.53 38.49 0.25 10.37 16 8 N -0.60 -23.10 2.87 -702.42 -2.01 -25.11 16 9 C 0.09 2.98 9.20 127.77 1.18 4.16 16 10 C 0.24 10.55 2.16 44.24 0.10 10.64 16 11 H 0.04 2.09 4.32 -2.39 -0.01 2.08 16 12 C -0.16 -6.23 8.74 71.98 0.63 -5.60 16 13 C -0.53 -28.57 8.54 25.60 0.22 -28.36 16 14 H 0.04 2.56 7.24 -2.91 -0.02 2.54 16 15 C 0.02 1.21 5.45 84.66 0.46 1.67 16 16 N -0.94 -56.91 13.96 21.45 0.30 -56.61 16 17 Si 0.94 43.20 24.37 68.60 1.67 44.87 16 18 H -0.26 -11.28 6.87 99.48 0.68 -10.60 16 19 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 20 H -0.25 -10.81 6.53 99.48 0.65 -10.16 16 21 C -0.32 -12.09 9.18 22.50 0.21 -11.89 16 22 C 0.30 10.08 6.76 38.79 0.26 10.34 16 23 N -0.86 -26.09 8.46 -50.88 -0.43 -26.52 16 24 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 25 H 0.08 1.15 8.12 -2.39 -0.02 1.13 16 26 H 0.11 1.17 7.90 -2.39 -0.02 1.15 16 27 H 0.17 2.28 6.96 -2.91 -0.02 2.26 16 28 H 0.14 3.23 6.26 -2.91 -0.02 3.22 16 29 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.08 2.20 6.42 -2.39 -0.02 2.18 16 31 H 0.06 2.12 6.66 -2.39 -0.02 2.10 16 32 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.06 2.33 7.79 -2.38 -0.02 2.31 16 34 H 0.04 1.70 3.27 -2.38 -0.01 1.69 16 35 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 36 H 0.11 4.37 5.70 -2.91 -0.02 4.36 16 37 H 0.41 12.08 6.14 -92.71 -0.57 11.51 16 38 H 0.40 11.03 8.91 -92.71 -0.83 10.20 16 Total: -1.00 -67.84 300.23 3.55 -64.29 By element: Atomic # 1 Polarization: 32.56 SS G_CDS: -0.37 Total: 32.20 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: 4.43 Total: -16.35 kcal Atomic # 7 Polarization: -106.10 SS G_CDS: -2.15 Total: -108.24 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.05 Total: -16.76 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.67 Total: 44.87 kcal Total: -67.84 3.55 -64.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228274295.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.878 kcal (2) G-P(sol) polarization free energy of solvation -67.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds