Wall clock time and date at job start Mon Mar 30 2020 06:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21371 * 119.99706 * 2 1 4 4 C 1.46266 * 120.00037 * 179.97438 * 2 1 3 5 5 C 1.40269 * 120.16236 * 5.76212 * 4 2 1 6 6 C 1.36294 * 120.09571 * 179.97438 * 5 4 2 7 7 C 1.39583 * 120.43808 * 359.97438 * 6 5 4 8 8 N 1.38928 * 119.83772 * 179.97438 * 7 6 5 9 9 C 1.46505 * 119.99893 * 174.24814 * 8 7 6 10 10 C 1.46502 * 119.99742 * 354.25375 * 8 7 6 11 11 H 1.08996 * 109.47366 * 4.77533 * 10 8 7 12 12 C 1.53000 * 109.46520 * 244.77680 * 10 8 7 13 13 C 1.50700 * 109.47089 * 124.78089 * 10 8 7 14 14 H 1.07997 * 120.00232 * 359.97438 * 13 10 8 15 15 C 1.37877 * 119.99929 * 179.97438 * 13 10 8 16 16 N 1.31515 * 119.99827 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 120.00021 * 179.97438 * 15 13 10 18 18 H 1.48495 * 109.47229 * 60.00230 * 17 15 13 19 19 H 1.48498 * 109.47110 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47339 * 299.99890 * 17 15 13 21 21 C 1.38863 * 120.32426 * 0.02562 * 7 6 5 22 22 C 1.38578 * 119.89870 * 359.97438 * 21 7 6 23 23 N 1.38743 * 120.21534 * 179.97438 * 22 21 7 24 24 H 1.09001 * 109.46881 * 270.00496 * 1 2 3 25 25 H 1.08996 * 109.46840 * 30.00304 * 1 2 3 26 26 H 1.08999 * 109.46587 * 150.00683 * 1 2 3 27 27 H 1.08001 * 119.95765 * 359.95155 * 5 4 2 28 28 H 1.07999 * 119.78371 * 179.97438 * 6 5 4 29 29 H 1.08991 * 109.46784 * 90.00313 * 9 8 7 30 30 H 1.09002 * 109.46688 * 210.00547 * 9 8 7 31 31 H 1.09000 * 109.47172 * 330.00168 * 9 8 7 32 32 H 1.08999 * 109.47129 * 180.02562 * 12 10 8 33 33 H 1.09005 * 109.47281 * 299.99749 * 12 10 8 34 34 H 1.08998 * 109.47674 * 60.00012 * 12 10 8 35 35 H 0.97000 * 119.99684 * 179.97438 * 16 15 13 36 36 H 1.08002 * 120.04849 * 179.72133 * 21 7 6 37 37 H 0.96995 * 120.00313 * 24.82309 * 23 22 21 38 38 H 0.97005 * 119.99573 * 204.82709 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1139 1.0511 0.0000 4 6 2.2384 -1.2667 0.0006 5 6 1.5458 -2.4804 -0.1207 6 6 2.2287 -3.6600 -0.1205 7 6 3.6193 -3.6719 -0.0007 8 7 4.3028 -4.8815 -0.0014 9 6 5.7678 -4.8950 -0.0030 10 6 3.5585 -6.1433 -0.0007 11 1 2.4918 -5.9361 -0.0852 12 6 3.8303 -6.8949 1.3040 13 6 4.0002 -6.9877 -1.1682 14 1 4.7591 -6.6209 -1.8434 15 6 3.4355 -8.2285 -1.3743 16 7 2.5117 -8.6754 -0.5518 17 14 3.9825 -9.2749 -2.8218 18 1 5.4360 -9.5568 -2.7076 19 1 3.2282 -10.5540 -2.8210 20 1 3.7178 -8.5455 -4.0880 21 6 4.3229 -2.4809 0.1204 22 6 3.6424 -1.2737 0.1218 23 7 4.3387 -0.0798 0.2429 24 1 -0.3633 0.0001 1.0277 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3632 -0.8901 -0.5137 27 1 0.4698 -2.4804 -0.2139 28 1 1.6903 -4.5915 -0.2137 29 1 6.1321 -4.8984 1.0242 30 1 6.1222 -5.7883 -0.5173 31 1 6.1388 -4.0084 -0.5172 32 1 3.2769 -7.8339 1.3044 33 1 4.8971 -7.1022 1.3884 34 1 3.5109 -6.2842 2.1484 35 1 2.1142 -9.5482 -0.6970 36 1 5.3984 -2.4955 0.2174 37 1 5.2688 -0.0312 -0.0278 38 1 3.8953 0.7064 0.5983 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228274305.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:22 Heat of formation + Delta-G solvation = -2.441109 kcal Electronic energy + Delta-G solvation = -19635.260137 eV Core-core repulsion = 16670.792222 eV Total energy + Delta-G solvation = -2964.467915 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.80252 -38.28196 -36.21685 -33.98783 -33.09915 -30.94205 -29.83277 -28.20540 -28.12594 -25.69190 -25.32362 -22.39068 -21.58622 -20.15645 -19.10827 -17.14201 -16.68141 -16.34483 -15.71401 -15.15333 -14.72288 -14.68229 -14.32017 -13.99282 -13.74781 -13.52704 -12.93514 -12.53567 -12.31699 -12.22225 -11.93831 -11.83709 -11.67372 -11.34007 -11.20384 -10.94130 -10.73734 -10.70853 -10.30043 -10.22974 -10.03651 -9.30001 -9.17831 -8.86928 -8.53733 -7.35955 -6.58540 -6.17229 -4.28057 1.44775 2.20899 2.98815 3.21371 3.26829 3.29008 3.94000 4.29761 4.38063 4.47459 4.61483 5.11317 5.23645 5.32121 5.54440 5.68189 5.79981 5.88566 5.95776 6.05940 6.10948 6.17564 6.21748 6.39107 6.61175 6.71455 6.78383 6.84612 6.97007 7.00707 7.19760 7.35321 7.56808 7.76429 7.84172 7.98744 8.04867 8.18893 8.24671 8.44077 8.77194 9.39082 10.85091 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.028877 B = 0.004868 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.394553 B = 5750.246973 C = 6139.154183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.406 3.594 3 O -0.509 6.509 4 C -0.335 4.335 5 C 0.008 3.992 6 C -0.249 4.249 7 C 0.307 3.693 8 N -0.587 5.587 9 C 0.092 3.908 10 C 0.258 3.742 11 H 0.058 0.942 12 C -0.149 4.149 13 C -0.530 4.530 14 H 0.061 0.939 15 C 0.067 3.933 16 N -0.888 5.888 17 Si 0.899 3.101 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.276 1.276 21 C -0.316 4.316 22 C 0.318 3.682 23 N -0.867 5.867 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.122 0.878 28 H 0.133 0.867 29 H 0.039 0.961 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.094 0.906 33 H 0.029 0.971 34 H 0.013 0.987 35 H 0.265 0.735 36 H 0.119 0.881 37 H 0.390 0.610 38 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.060 10.409 2.205 10.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.292 3.708 3 O -0.391 6.391 4 C -0.343 4.343 5 C -0.012 4.012 6 C -0.271 4.271 7 C 0.192 3.808 8 N -0.287 5.287 9 C -0.052 4.052 10 C 0.158 3.842 11 H 0.076 0.924 12 C -0.208 4.208 13 C -0.568 4.568 14 H 0.079 0.921 15 C -0.136 4.136 16 N -0.526 5.526 17 Si 0.727 3.273 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.202 1.202 21 C -0.345 4.345 22 C 0.208 3.792 23 N -0.412 5.412 24 H 0.108 0.892 25 H 0.095 0.905 26 H 0.102 0.898 27 H 0.139 0.861 28 H 0.151 0.849 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.049 0.951 34 H 0.032 0.968 35 H 0.075 0.925 36 H 0.136 0.864 37 H 0.217 0.783 38 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 0.188 10.489 2.245 10.728 hybrid contribution 0.511 -0.587 -0.757 1.085 sum 0.700 9.902 1.488 10.038 Atomic orbital electron populations 1.22188 0.95262 1.04102 1.03995 1.21917 0.90953 0.87659 0.70241 1.90281 1.71492 1.34988 1.42294 1.19493 0.92571 0.94530 1.27687 1.20620 0.98606 0.90743 0.91197 1.20507 0.92720 0.99017 1.14887 1.17972 0.91415 0.85762 0.85633 1.47362 1.05310 1.04503 1.71502 1.21566 0.81024 1.02431 1.00180 1.19084 0.92782 0.78238 0.94089 0.92419 1.22124 1.00176 1.02543 0.95935 1.21294 1.23309 1.01463 1.10768 0.92111 1.24878 0.94736 0.97444 0.96531 1.69850 1.26455 1.19639 1.36650 0.86540 0.78732 0.79429 0.82648 1.20216 1.21112 1.20156 1.20028 0.99348 0.90008 1.25080 1.17467 0.89784 0.85970 0.85954 1.42752 1.14520 1.11438 1.72445 0.89236 0.90455 0.89771 0.86056 0.84933 0.94251 0.90196 0.92726 0.88787 0.95136 0.96820 0.92492 0.86357 0.78285 0.75744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.17 9.86 36.01 0.35 -1.81 16 2 C 0.41 6.07 7.18 -31.08 -0.22 5.85 16 3 O -0.51 -8.55 14.56 5.48 0.08 -8.47 16 4 C -0.34 -5.45 5.89 -104.89 -0.62 -6.07 16 5 C 0.01 0.13 9.33 -39.52 -0.37 -0.24 16 6 C -0.25 -4.60 9.23 -39.78 -0.37 -4.97 16 7 C 0.31 5.89 6.53 -83.91 -0.55 5.34 16 8 N -0.59 -11.91 2.87 -173.36 -0.50 -12.41 16 9 C 0.09 1.60 9.20 59.85 0.55 2.15 16 10 C 0.26 6.00 2.57 -69.08 -0.18 5.82 16 11 H 0.06 1.43 5.26 -51.93 -0.27 1.16 16 12 C -0.15 -3.38 9.04 37.16 0.34 -3.04 16 13 C -0.53 -13.41 7.96 -34.44 -0.27 -13.69 16 14 H 0.06 1.54 7.00 -52.49 -0.37 1.18 16 15 C 0.07 1.72 5.30 -17.82 -0.09 1.62 16 16 N -0.89 -23.48 11.32 55.43 0.63 -22.85 16 17 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 C -0.32 -5.45 9.02 -39.22 -0.35 -5.80 16 22 C 0.32 5.27 6.76 -83.59 -0.57 4.71 16 23 N -0.87 -12.27 8.46 32.56 0.28 -12.00 16 24 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.08 0.81 6.25 -51.93 -0.32 0.48 16 27 H 0.12 1.54 6.23 -52.49 -0.33 1.21 16 28 H 0.13 2.59 5.69 -52.49 -0.30 2.30 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.47 6.66 -51.93 -0.35 1.12 16 31 H 0.05 0.84 6.43 -51.93 -0.33 0.51 16 32 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 33 H 0.03 0.66 7.79 -51.93 -0.40 0.25 16 34 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 36 H 0.12 1.87 6.27 -52.49 -0.33 1.54 16 37 H 0.39 4.57 8.90 -40.82 -0.36 4.21 16 38 H 0.41 5.86 6.13 -40.82 -0.25 5.61 16 LS Contribution 305.50 15.07 4.60 4.60 Total: -1.00 -27.78 305.50 -7.04 -34.82 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -4.76 Total: 11.33 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -2.35 Total: -10.13 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: 0.41 Total: -47.26 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.08 Total: -8.47 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.78 -7.04 -34.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228274305.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.379 kcal (2) G-P(sol) polarization free energy of solvation -27.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds