Wall clock time and date at job start Mon Mar 30 2020 06:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21371 * 119.99706 * 2 1 4 4 C 1.46266 * 120.00037 * 179.97438 * 2 1 3 5 5 C 1.40269 * 120.16236 * 5.76212 * 4 2 1 6 6 C 1.36294 * 120.09571 * 179.97438 * 5 4 2 7 7 C 1.39583 * 120.43808 * 359.97438 * 6 5 4 8 8 N 1.38928 * 119.83772 * 179.97438 * 7 6 5 9 9 C 1.46505 * 119.99893 * 174.24814 * 8 7 6 10 10 C 1.46502 * 119.99742 * 354.25375 * 8 7 6 11 11 H 1.08996 * 109.47366 * 4.77533 * 10 8 7 12 12 C 1.53000 * 109.46520 * 244.77680 * 10 8 7 13 13 C 1.50700 * 109.47089 * 124.78089 * 10 8 7 14 14 H 1.07997 * 120.00232 * 359.97438 * 13 10 8 15 15 C 1.37877 * 119.99929 * 179.97438 * 13 10 8 16 16 N 1.31515 * 119.99827 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 120.00021 * 179.97438 * 15 13 10 18 18 H 1.48495 * 109.47229 * 60.00230 * 17 15 13 19 19 H 1.48498 * 109.47110 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47339 * 299.99890 * 17 15 13 21 21 C 1.38863 * 120.32426 * 0.02562 * 7 6 5 22 22 C 1.38578 * 119.89870 * 359.97438 * 21 7 6 23 23 N 1.38743 * 120.21534 * 179.97438 * 22 21 7 24 24 H 1.09001 * 109.46881 * 270.00496 * 1 2 3 25 25 H 1.08996 * 109.46840 * 30.00304 * 1 2 3 26 26 H 1.08999 * 109.46587 * 150.00683 * 1 2 3 27 27 H 1.08001 * 119.95765 * 359.95155 * 5 4 2 28 28 H 1.07999 * 119.78371 * 179.97438 * 6 5 4 29 29 H 1.08991 * 109.46784 * 90.00313 * 9 8 7 30 30 H 1.09002 * 109.46688 * 210.00547 * 9 8 7 31 31 H 1.09000 * 109.47172 * 330.00168 * 9 8 7 32 32 H 1.08999 * 109.47129 * 180.02562 * 12 10 8 33 33 H 1.09005 * 109.47281 * 299.99749 * 12 10 8 34 34 H 1.08998 * 109.47674 * 60.00012 * 12 10 8 35 35 H 0.97000 * 119.99684 * 179.97438 * 16 15 13 36 36 H 1.08002 * 120.04849 * 179.72133 * 21 7 6 37 37 H 0.96995 * 120.00313 * 24.82309 * 23 22 21 38 38 H 0.97005 * 119.99573 * 204.82709 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1139 1.0511 0.0000 4 6 2.2384 -1.2667 0.0006 5 6 1.5458 -2.4804 -0.1207 6 6 2.2287 -3.6600 -0.1205 7 6 3.6193 -3.6719 -0.0007 8 7 4.3028 -4.8815 -0.0014 9 6 5.7678 -4.8950 -0.0030 10 6 3.5585 -6.1433 -0.0007 11 1 2.4918 -5.9361 -0.0852 12 6 3.8303 -6.8949 1.3040 13 6 4.0002 -6.9877 -1.1682 14 1 4.7591 -6.6209 -1.8434 15 6 3.4355 -8.2285 -1.3743 16 7 2.5117 -8.6754 -0.5518 17 14 3.9825 -9.2749 -2.8218 18 1 5.4360 -9.5568 -2.7076 19 1 3.2282 -10.5540 -2.8210 20 1 3.7178 -8.5455 -4.0880 21 6 4.3229 -2.4809 0.1204 22 6 3.6424 -1.2737 0.1218 23 7 4.3387 -0.0798 0.2429 24 1 -0.3633 0.0001 1.0277 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3632 -0.8901 -0.5137 27 1 0.4698 -2.4804 -0.2139 28 1 1.6903 -4.5915 -0.2137 29 1 6.1321 -4.8984 1.0242 30 1 6.1222 -5.7883 -0.5173 31 1 6.1388 -4.0084 -0.5172 32 1 3.2769 -7.8339 1.3044 33 1 4.8971 -7.1022 1.3884 34 1 3.5109 -6.2842 2.1484 35 1 2.1142 -9.5482 -0.6970 36 1 5.3984 -2.4955 0.2174 37 1 5.2688 -0.0312 -0.0278 38 1 3.8953 0.7064 0.5983 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228274305.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:22 Heat of formation + Delta-G solvation = -18.235614 kcal Electronic energy + Delta-G solvation = -19635.945038 eV Core-core repulsion = 16670.792222 eV Total energy + Delta-G solvation = -2965.152816 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.09019 -39.63499 -37.66822 -35.36165 -34.77421 -32.36982 -31.27338 -29.56475 -29.35306 -27.26535 -27.07676 -23.87971 -22.91386 -21.61866 -20.44931 -18.60055 -18.30785 -17.74185 -17.16548 -16.62108 -16.21493 -15.93288 -15.48533 -15.46319 -15.24288 -14.77772 -14.43253 -14.18333 -13.58482 -13.51442 -13.44750 -13.06925 -12.93245 -12.85294 -12.73471 -12.68250 -12.41511 -12.33125 -12.10300 -11.70809 -11.54787 -11.01298 -10.51142 -10.38379 -10.32226 -8.63732 -8.22251 -7.93624 -6.28072 0.17363 0.87486 1.43453 1.44612 1.51595 1.74105 2.35648 2.56411 3.12660 3.16354 3.17351 3.51892 4.00860 4.31325 4.42237 4.49582 4.62122 4.69131 4.72286 4.77099 4.78709 4.84027 4.96054 5.01198 5.03739 5.12034 5.20088 5.40082 5.45444 5.53942 5.62496 5.75387 5.86130 5.95694 6.17309 6.48924 6.62963 6.85227 6.88206 6.92845 7.11705 7.42447 8.89578 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.028877 B = 0.004868 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.394553 B = 5750.246973 C = 6139.154183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.404 3.596 3 O -0.528 6.528 4 C -0.343 4.343 5 C 0.022 3.978 6 C -0.274 4.274 7 C 0.285 3.715 8 N -0.602 5.602 9 C 0.093 3.907 10 C 0.264 3.736 11 H 0.037 0.963 12 C -0.136 4.136 13 C -0.540 4.540 14 H 0.055 0.945 15 C 0.024 3.976 16 N -0.912 5.912 17 Si 0.955 3.045 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.277 1.277 21 C -0.314 4.314 22 C 0.308 3.692 23 N -0.856 5.856 24 H 0.109 0.891 25 H 0.087 0.913 26 H 0.099 0.901 27 H 0.154 0.846 28 H 0.114 0.886 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.032 0.968 34 H 0.022 0.978 35 H 0.265 0.735 36 H 0.131 0.869 37 H 0.402 0.598 38 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.239 11.853 1.957 12.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.291 3.709 3 O -0.412 6.412 4 C -0.350 4.350 5 C 0.003 3.997 6 C -0.297 4.297 7 C 0.173 3.827 8 N -0.304 5.304 9 C -0.049 4.049 10 C 0.162 3.838 11 H 0.055 0.945 12 C -0.195 4.195 13 C -0.578 4.578 14 H 0.073 0.927 15 C -0.176 4.176 16 N -0.550 5.550 17 Si 0.781 3.219 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.202 1.202 21 C -0.343 4.343 22 C 0.197 3.803 23 N -0.401 5.401 24 H 0.127 0.873 25 H 0.106 0.894 26 H 0.118 0.882 27 H 0.172 0.828 28 H 0.131 0.869 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.051 0.949 34 H 0.041 0.959 35 H 0.074 0.926 36 H 0.149 0.851 37 H 0.231 0.769 38 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 0.031 11.978 1.998 12.143 hybrid contribution 0.531 -0.867 -0.660 1.212 sum 0.561 11.111 1.338 11.205 Atomic orbital electron populations 1.22199 0.91788 1.05409 1.05607 1.22357 0.92848 0.86544 0.69126 1.90279 1.72410 1.35411 1.43055 1.19869 0.92829 0.95482 1.26841 1.20893 1.00151 0.89560 0.89105 1.20508 0.92860 0.99287 1.17073 1.18212 0.91886 0.85906 0.86712 1.47171 1.06059 1.03851 1.73278 1.21620 0.79674 1.02650 1.01000 1.18755 0.92065 0.79455 0.93505 0.94508 1.21938 0.99815 1.01483 0.96258 1.21549 1.22995 1.01947 1.11354 0.92723 1.25557 0.94877 0.98534 0.98669 1.69963 1.27302 1.19876 1.37909 0.85651 0.78493 0.77927 0.79790 1.19651 1.20847 1.20219 1.20112 0.99979 0.89542 1.24626 1.17675 0.90384 0.86455 0.85792 1.42713 1.15110 1.10593 1.71709 0.87287 0.89415 0.88243 0.82828 0.86863 0.93079 0.91657 0.90742 0.91095 0.94909 0.95879 0.92566 0.85077 0.76896 0.75646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.53 9.86 71.24 0.70 -2.82 16 2 C 0.40 11.01 7.18 27.78 0.20 11.21 16 3 O -0.53 -16.57 14.56 -3.31 -0.05 -16.61 16 4 C -0.34 -10.46 5.89 -20.04 -0.12 -10.57 16 5 C 0.02 0.67 9.33 22.31 0.21 0.88 16 6 C -0.27 -10.18 9.23 22.14 0.20 -9.97 16 7 C 0.28 10.90 6.53 38.49 0.25 11.15 16 8 N -0.60 -24.58 2.87 -702.39 -2.01 -26.60 16 9 C 0.09 3.22 9.20 127.77 1.18 4.40 16 10 C 0.26 12.55 2.57 44.24 0.11 12.66 16 11 H 0.04 1.91 5.26 -2.39 -0.01 1.90 16 12 C -0.14 -6.28 9.04 71.98 0.65 -5.63 16 13 C -0.54 -27.79 7.96 25.60 0.20 -27.59 16 14 H 0.05 2.81 7.00 -2.91 -0.02 2.79 16 15 C 0.02 1.24 5.30 84.65 0.45 1.69 16 16 N -0.91 -49.09 11.32 21.45 0.24 -48.84 16 17 Si 0.96 41.46 29.54 68.60 2.03 43.49 16 18 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 19 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 20 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 21 C -0.31 -10.46 9.02 22.50 0.20 -10.26 16 22 C 0.31 9.70 6.76 38.79 0.26 9.96 16 23 N -0.86 -22.57 8.46 -50.89 -0.43 -23.00 16 24 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.10 1.52 6.25 -2.39 -0.01 1.50 16 27 H 0.15 3.48 6.23 -2.91 -0.02 3.46 16 28 H 0.11 4.61 5.69 -2.91 -0.02 4.59 16 29 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 2.41 6.66 -2.39 -0.02 2.39 16 31 H 0.07 2.21 6.43 -2.39 -0.02 2.19 16 32 H 0.07 3.60 6.07 -2.39 -0.01 3.58 16 33 H 0.03 1.43 7.79 -2.38 -0.02 1.42 16 34 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 36 H 0.13 3.91 6.27 -2.91 -0.02 3.89 16 37 H 0.40 8.59 8.90 -92.71 -0.83 7.77 16 38 H 0.41 10.96 6.13 -92.70 -0.57 10.39 16 Total: -1.00 -59.45 305.50 3.99 -55.46 By element: Atomic # 1 Polarization: 31.29 SS G_CDS: -0.29 Total: 31.00 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: 4.50 Total: -14.90 kcal Atomic # 7 Polarization: -96.24 SS G_CDS: -2.20 Total: -98.44 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.05 Total: -16.61 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -59.45 3.99 -55.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228274305.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.223 kcal (2) G-P(sol) polarization free energy of solvation -59.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds