Wall clock time and date at job start Mon Mar 30 2020 06:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 110.33226 * 2 1 4 4 C 1.54487 * 110.46635 * 237.69311 * 2 1 3 5 5 C 1.54681 * 104.07673 * 217.05042 * 4 2 1 6 6 C 1.54472 * 103.98212 * 0.13010 * 5 4 2 7 7 H 1.08997 * 110.37410 * 264.96518 * 6 5 4 8 8 C 1.53004 * 110.37114 * 142.74140 * 6 5 4 9 9 O 1.42898 * 109.47148 * 176.55333 * 8 6 5 10 10 C 1.35672 * 116.99886 * 179.97438 * 9 8 6 11 11 C 1.39321 * 119.81924 * 179.97438 * 10 9 8 12 12 C 1.36434 * 120.18729 * 180.02562 * 11 10 9 13 13 C 1.40837 * 119.81141 * 359.97438 * 12 11 10 14 14 C 1.41205 * 120.17803 * 180.02562 * 13 12 11 15 15 H 1.08006 * 120.00422 * 24.54799 * 14 13 12 16 16 C 1.39890 * 119.99990 * 204.54713 * 14 13 12 17 17 N 1.30879 * 119.99903 * 17.92441 * 16 14 13 18 18 Si 1.86803 * 119.99946 * 197.92248 * 16 14 13 19 19 H 1.48495 * 109.47165 * 60.00441 * 18 16 14 20 20 H 1.48506 * 109.46769 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47308 * 299.99931 * 18 16 14 22 22 C 1.40833 * 119.64089 * 359.97438 * 13 12 11 23 23 C 1.36436 * 119.81496 * 0.02562 * 22 13 12 24 24 O 1.44424 * 104.90334 * 23.85414 * 6 5 4 25 25 H 1.09003 * 109.46951 * 299.19873 * 1 2 3 26 26 H 1.08993 * 109.47647 * 59.19849 * 1 2 3 27 27 H 1.09000 * 109.47189 * 179.20467 * 1 2 3 28 28 H 1.08997 * 110.50538 * 335.78390 * 4 2 1 29 29 H 1.09001 * 110.51026 * 98.35469 * 4 2 1 30 30 H 1.09005 * 110.61125 * 241.48511 * 5 4 2 31 31 H 1.09002 * 110.48977 * 118.72584 * 5 4 2 32 32 H 1.08996 * 109.47035 * 56.54752 * 8 6 5 33 33 H 1.09008 * 109.46980 * 296.54809 * 8 6 5 34 34 H 1.08001 * 119.90233 * 359.97438 * 11 10 9 35 35 H 1.07997 * 120.09384 * 179.73091 * 12 11 10 36 36 H 0.96999 * 119.99776 * 179.97438 * 17 16 14 37 37 H 1.07999 * 120.09364 * 180.02562 * 22 13 12 38 38 H 1.07998 * 119.90946 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0701 -0.7735 -1.2233 5 6 3.3235 -1.5022 -0.6842 6 6 3.3883 -1.0840 0.8014 7 1 4.0523 -0.2287 0.9263 8 6 3.8621 -2.2553 1.6643 9 8 3.9919 -1.8255 3.0210 10 6 4.4056 -2.7505 3.9231 11 6 4.5528 -2.3949 5.2621 12 6 4.9689 -3.3190 6.1756 13 6 5.2493 -4.6356 5.7618 14 6 5.6798 -5.5983 6.7008 15 1 5.4299 -5.4836 7.7452 16 6 6.4301 -6.7008 6.2782 17 7 7.0294 -6.6775 5.1149 18 14 6.5767 -8.2063 7.3744 19 1 5.2255 -8.7677 7.6276 20 1 7.4198 -9.2276 6.7024 21 1 7.2021 -7.8201 8.6648 22 6 5.0969 -4.9871 4.4066 23 6 4.6799 -4.0511 3.5057 24 8 2.0329 -0.7225 1.1450 25 1 -0.3633 0.5014 0.8971 26 1 -0.3634 0.5262 -0.8826 27 1 -0.3633 -1.0276 -0.0143 28 1 1.3313 -1.4927 -1.5770 29 1 2.3426 -0.0833 -2.0217 30 1 4.2172 -1.1712 -1.2134 31 1 3.2045 -2.5821 -0.7722 32 1 4.8275 -2.6072 1.3006 33 1 3.1351 -3.0656 1.6079 34 1 4.3377 -1.3847 5.5776 35 1 5.0866 -3.0405 7.2124 36 1 7.5499 -7.4418 4.8221 37 1 5.3095 -5.9948 4.0813 38 1 4.5621 -4.3191 2.4662 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232001709.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:48 Heat of formation + Delta-G solvation = -76.191193 kcal Electronic energy + Delta-G solvation = -19052.616027 eV Core-core repulsion = 16052.657317 eV Total energy + Delta-G solvation = -2999.958710 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.71811 -38.49690 -36.28788 -33.37556 -32.35074 -32.12910 -29.61354 -29.25855 -27.88424 -24.85235 -23.77448 -21.78755 -21.17366 -20.66707 -20.18945 -17.32179 -17.05213 -16.37850 -16.06935 -15.61025 -15.02148 -14.34976 -14.04342 -13.91842 -13.88026 -13.11021 -12.88165 -12.54137 -12.38888 -12.21402 -11.86288 -11.77110 -11.53163 -11.40525 -11.15849 -11.03562 -10.98287 -10.88905 -10.73178 -10.52213 -9.85999 -9.76404 -9.71528 -9.31567 -8.97085 -7.60834 -6.96365 -6.69320 -4.21273 2.81784 3.01061 3.09363 3.12480 3.25960 3.76453 3.97381 4.00653 4.46551 4.63327 4.65435 4.78965 5.05251 5.17899 5.24074 5.38484 5.39879 5.44918 5.62054 5.65300 5.71485 5.76558 5.88826 5.92792 5.99436 6.06029 6.16457 6.33103 6.76574 6.92134 6.93721 7.10576 7.32299 7.45923 7.60433 7.95441 8.04022 8.19952 8.49568 8.69562 8.93880 9.03881 10.25450 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.042772 B = 0.003599 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.478502 B = 7777.978076 C = 8066.988192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.065 3.935 3 H 0.066 0.934 4 C -0.149 4.149 5 C -0.149 4.149 6 C 0.079 3.921 7 H 0.076 0.924 8 C 0.075 3.925 9 O -0.323 6.323 10 C -0.006 4.006 11 C -0.113 4.113 12 C -0.196 4.196 13 C 0.087 3.913 14 C -0.465 4.465 15 H 0.076 0.924 16 C 0.075 3.925 17 N -0.801 5.801 18 Si 0.907 3.093 19 H -0.264 1.264 20 H -0.280 1.280 21 H -0.266 1.266 22 C -0.134 4.134 23 C -0.175 4.175 24 O -0.356 6.356 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.279 0.721 37 H 0.121 0.879 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.753 7.610 -11.944 15.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.007 3.993 3 H 0.084 0.916 4 C -0.187 4.187 5 C -0.186 4.186 6 C 0.022 3.978 7 H 0.093 0.907 8 C -0.001 4.001 9 O -0.239 6.239 10 C -0.050 4.050 11 C -0.132 4.132 12 C -0.215 4.215 13 C 0.085 3.915 14 C -0.495 4.495 15 H 0.094 0.906 16 C -0.141 4.141 17 N -0.428 5.428 18 Si 0.732 3.268 19 H -0.189 1.189 20 H -0.205 1.205 21 H -0.191 1.191 22 C -0.153 4.153 23 C -0.194 4.194 24 O -0.276 6.276 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.090 0.910 37 H 0.139 0.861 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.748 7.610 -11.851 15.617 hybrid contribution 0.404 -0.911 0.059 0.999 sum -6.344 6.699 -11.792 14.972 Atomic orbital electron populations 1.21786 0.93320 1.02906 1.02279 1.22977 0.95355 0.95534 0.85444 0.91573 1.23022 0.97600 0.99775 0.98325 1.22935 0.98672 1.01945 0.95083 1.22992 0.85100 0.97199 0.92552 0.90655 1.22487 0.99895 0.95381 0.82320 1.85840 1.84574 1.37510 1.15945 1.18596 1.08699 0.88612 0.89058 1.19616 1.04625 0.98664 0.90314 1.20594 1.09862 0.93382 0.97690 1.17581 0.90193 0.91125 0.92635 1.19432 1.29681 1.04808 0.95538 0.90552 1.25867 0.93360 0.99510 0.95399 1.69835 1.22853 1.30279 1.19804 0.86390 0.79132 0.80601 0.80691 1.18913 1.20461 1.19086 1.20933 1.02067 0.98795 0.93532 1.20609 1.06777 0.93479 0.98525 1.89288 1.26475 1.74293 1.37496 0.91757 0.91408 0.91793 0.90511 0.90643 0.90142 0.90237 0.91743 0.92340 0.88520 0.88228 0.91003 0.86141 0.88846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.53 37.15 0.35 -1.02 16 2 C 0.06 0.72 3.92 -25.95 -0.10 0.62 16 3 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 4 C -0.15 -1.37 6.64 -25.07 -0.17 -1.54 16 5 C -0.15 -1.56 6.64 -25.07 -0.17 -1.73 16 6 C 0.08 1.13 3.57 -25.96 -0.09 1.04 16 7 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 8 C 0.08 1.30 4.34 37.16 0.16 1.46 16 9 O -0.32 -7.06 10.12 -19.12 -0.19 -7.26 16 10 C -0.01 -0.16 6.71 -38.78 -0.26 -0.42 16 11 C -0.11 -2.75 9.92 -39.83 -0.40 -3.15 16 12 C -0.20 -4.97 9.74 -39.25 -0.38 -5.35 16 13 C 0.09 2.37 5.57 -106.81 -0.60 1.78 16 14 C -0.46 -12.55 9.04 -37.84 -0.34 -12.89 16 15 H 0.08 1.97 7.91 -52.48 -0.41 1.56 16 16 C 0.08 1.91 5.13 -17.34 -0.09 1.83 16 17 N -0.80 -21.00 10.96 55.54 0.61 -20.39 16 18 Si 0.91 18.94 29.60 -169.99 -5.03 13.91 16 19 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 22 C -0.13 -3.56 8.64 -39.25 -0.34 -3.89 16 23 C -0.17 -4.25 8.96 -39.83 -0.36 -4.60 16 24 O -0.36 -5.60 11.04 -35.63 -0.39 -5.99 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 28 H 0.08 0.66 7.86 -51.93 -0.41 0.25 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.82 7.87 -51.93 -0.41 0.41 16 32 H 0.06 1.04 7.65 -51.93 -0.40 0.65 16 33 H 0.06 1.02 7.64 -51.92 -0.40 0.63 16 34 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 35 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 36 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 37 H 0.12 3.27 6.16 -52.49 -0.32 2.94 16 38 H 0.09 2.01 6.27 -52.49 -0.33 1.68 16 LS Contribution 314.16 15.07 4.73 4.73 Total: -1.00 -29.80 314.16 -8.66 -38.47 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -5.62 Total: 4.39 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: -2.77 Total: -27.86 kcal Atomic # 7 Polarization: -21.00 SS G_CDS: 0.61 Total: -20.39 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.59 Total: -13.24 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.80 -8.66 -38.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232001709.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.725 kcal (2) G-P(sol) polarization free energy of solvation -29.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds