Wall clock time and date at job start Mon Mar 30 2020 06:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 110.33226 * 2 1 4 4 C 1.54487 * 110.46635 * 237.69311 * 2 1 3 5 5 C 1.54681 * 104.07673 * 217.05042 * 4 2 1 6 6 C 1.54472 * 103.98212 * 0.13010 * 5 4 2 7 7 H 1.08997 * 110.37410 * 264.96518 * 6 5 4 8 8 C 1.53004 * 110.37114 * 142.74140 * 6 5 4 9 9 O 1.42898 * 109.47148 * 176.55333 * 8 6 5 10 10 C 1.35672 * 116.99886 * 179.97438 * 9 8 6 11 11 C 1.39321 * 119.81924 * 179.97438 * 10 9 8 12 12 C 1.36434 * 120.18729 * 180.02562 * 11 10 9 13 13 C 1.40837 * 119.81141 * 359.97438 * 12 11 10 14 14 C 1.41205 * 120.17803 * 180.02562 * 13 12 11 15 15 H 1.08006 * 120.00422 * 24.54799 * 14 13 12 16 16 C 1.39890 * 119.99990 * 204.54713 * 14 13 12 17 17 N 1.30879 * 119.99903 * 17.92441 * 16 14 13 18 18 Si 1.86803 * 119.99946 * 197.92248 * 16 14 13 19 19 H 1.48495 * 109.47165 * 60.00441 * 18 16 14 20 20 H 1.48506 * 109.46769 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47308 * 299.99931 * 18 16 14 22 22 C 1.40833 * 119.64089 * 359.97438 * 13 12 11 23 23 C 1.36436 * 119.81496 * 0.02562 * 22 13 12 24 24 O 1.44424 * 104.90334 * 23.85414 * 6 5 4 25 25 H 1.09003 * 109.46951 * 299.19873 * 1 2 3 26 26 H 1.08993 * 109.47647 * 59.19849 * 1 2 3 27 27 H 1.09000 * 109.47189 * 179.20467 * 1 2 3 28 28 H 1.08997 * 110.50538 * 335.78390 * 4 2 1 29 29 H 1.09001 * 110.51026 * 98.35469 * 4 2 1 30 30 H 1.09005 * 110.61125 * 241.48511 * 5 4 2 31 31 H 1.09002 * 110.48977 * 118.72584 * 5 4 2 32 32 H 1.08996 * 109.47035 * 56.54752 * 8 6 5 33 33 H 1.09008 * 109.46980 * 296.54809 * 8 6 5 34 34 H 1.08001 * 119.90233 * 359.97438 * 11 10 9 35 35 H 1.07997 * 120.09384 * 179.73091 * 12 11 10 36 36 H 0.96999 * 119.99776 * 179.97438 * 17 16 14 37 37 H 1.07999 * 120.09364 * 180.02562 * 22 13 12 38 38 H 1.07998 * 119.90946 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0701 -0.7735 -1.2233 5 6 3.3235 -1.5022 -0.6842 6 6 3.3883 -1.0840 0.8014 7 1 4.0523 -0.2287 0.9263 8 6 3.8621 -2.2553 1.6643 9 8 3.9919 -1.8255 3.0210 10 6 4.4056 -2.7505 3.9231 11 6 4.5528 -2.3949 5.2621 12 6 4.9689 -3.3190 6.1756 13 6 5.2493 -4.6356 5.7618 14 6 5.6798 -5.5983 6.7008 15 1 5.4299 -5.4836 7.7452 16 6 6.4301 -6.7008 6.2782 17 7 7.0294 -6.6775 5.1149 18 14 6.5767 -8.2063 7.3744 19 1 5.2255 -8.7677 7.6276 20 1 7.4198 -9.2276 6.7024 21 1 7.2021 -7.8201 8.6648 22 6 5.0969 -4.9871 4.4066 23 6 4.6799 -4.0511 3.5057 24 8 2.0329 -0.7225 1.1450 25 1 -0.3633 0.5014 0.8971 26 1 -0.3634 0.5262 -0.8826 27 1 -0.3633 -1.0276 -0.0143 28 1 1.3313 -1.4927 -1.5770 29 1 2.3426 -0.0833 -2.0217 30 1 4.2172 -1.1712 -1.2134 31 1 3.2045 -2.5821 -0.7722 32 1 4.8275 -2.6072 1.3006 33 1 3.1351 -3.0656 1.6079 34 1 4.3377 -1.3847 5.5776 35 1 5.0866 -3.0405 7.2124 36 1 7.5499 -7.4418 4.8221 37 1 5.3095 -5.9948 4.0813 38 1 4.5621 -4.3191 2.4662 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232001709.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:47 Heat of formation + Delta-G solvation = -92.670569 kcal Electronic energy + Delta-G solvation = -19053.330627 eV Core-core repulsion = 16052.657317 eV Total energy + Delta-G solvation = -3000.673309 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.90673 -40.10628 -38.10041 -35.26619 -33.29900 -33.16016 -31.55515 -31.06688 -29.10870 -26.68367 -24.94734 -23.21146 -22.58610 -22.01507 -21.66133 -19.27615 -18.68595 -17.55722 -17.27123 -17.05851 -16.54866 -15.80852 -15.73545 -15.45316 -14.79377 -14.67640 -14.30798 -14.11567 -13.71061 -13.52904 -13.41131 -13.09759 -12.84087 -12.77569 -12.66391 -12.56305 -12.31439 -12.10448 -11.81957 -11.67020 -11.57433 -11.54080 -11.24096 -10.87608 -10.71122 -9.58340 -8.92229 -8.60389 -6.23059 0.93204 1.03447 1.39780 1.50530 1.54972 2.23053 2.52091 2.71890 2.83032 3.60475 3.69438 3.76040 3.94591 4.07064 4.12599 4.26958 4.30815 4.36094 4.43127 4.46752 4.53672 4.65822 4.82478 4.90081 4.92158 5.00380 5.02856 5.10022 5.14528 5.18814 5.27206 5.36150 5.51080 5.65341 5.96267 5.97185 6.05304 6.22604 6.55363 6.78142 6.94464 7.09056 8.36592 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.042772 B = 0.003599 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.478502 B = 7777.978076 C = 8066.988192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.053 3.947 3 H 0.075 0.925 4 C -0.142 4.142 5 C -0.143 4.143 6 C 0.078 3.922 7 H 0.077 0.923 8 C 0.067 3.933 9 O -0.334 6.334 10 C -0.004 4.004 11 C -0.122 4.122 12 C -0.205 4.205 13 C 0.056 3.944 14 C -0.501 4.501 15 H 0.077 0.923 16 C 0.034 3.966 17 N -0.831 5.831 18 Si 0.983 3.017 19 H -0.262 1.262 20 H -0.268 1.268 21 H -0.260 1.260 22 C -0.155 4.155 23 C -0.176 4.176 24 O -0.395 6.395 25 H 0.053 0.947 26 H 0.096 0.904 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.288 0.712 37 H 0.108 0.892 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.985 7.798 -13.314 16.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.004 4.004 3 H 0.093 0.907 4 C -0.179 4.179 5 C -0.181 4.181 6 C 0.021 3.979 7 H 0.095 0.905 8 C -0.009 4.009 9 O -0.250 6.250 10 C -0.048 4.048 11 C -0.141 4.141 12 C -0.224 4.224 13 C 0.053 3.947 14 C -0.531 4.531 15 H 0.095 0.905 16 C -0.180 4.180 17 N -0.457 5.457 18 Si 0.804 3.196 19 H -0.186 1.186 20 H -0.192 1.192 21 H -0.184 1.184 22 C -0.174 4.174 23 C -0.195 4.195 24 O -0.315 6.315 25 H 0.072 0.928 26 H 0.115 0.885 27 H 0.075 0.925 28 H 0.102 0.898 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.135 0.865 35 H 0.129 0.871 36 H 0.098 0.902 37 H 0.126 0.874 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.988 7.821 -13.243 16.893 hybrid contribution 0.426 -0.840 0.392 1.020 sum -6.562 6.981 -12.852 16.030 Atomic orbital electron populations 1.21816 0.92349 1.02762 1.03182 1.23290 0.96268 0.95833 0.84987 0.90733 1.23026 0.96891 1.00049 0.97966 1.22960 1.00466 1.02233 0.92437 1.23053 0.84800 0.96033 0.94057 0.90519 1.22838 1.00538 0.97081 0.80407 1.85841 1.84119 1.37287 1.17760 1.18750 1.07487 0.88854 0.89690 1.19899 1.04217 0.99466 0.90530 1.20797 1.09907 0.93122 0.98621 1.17948 0.91209 0.92179 0.93323 1.19705 1.31240 1.06419 0.95686 0.90531 1.26738 0.92286 1.02029 0.96925 1.69884 1.23080 1.31425 1.21339 0.85242 0.79251 0.76429 0.78699 1.18606 1.19197 1.18395 1.20918 1.03692 0.98834 0.93987 1.20810 1.05961 0.93283 0.99428 1.89248 1.27072 1.75133 1.40082 0.92767 0.88546 0.92499 0.89850 0.87980 0.87898 0.90216 0.90612 0.92844 0.86479 0.87112 0.90191 0.87370 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.53 71.98 0.69 -1.79 16 2 C 0.05 1.08 3.92 31.10 0.12 1.21 16 3 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 4 C -0.14 -2.17 6.64 31.67 0.21 -1.96 16 5 C -0.14 -2.64 6.64 31.67 0.21 -2.43 16 6 C 0.08 2.12 3.57 31.10 0.11 2.24 16 7 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 8 C 0.07 2.26 4.34 71.98 0.31 2.57 16 9 O -0.33 -14.50 10.12 -89.51 -0.91 -15.40 16 10 C 0.00 -0.19 6.71 22.79 0.15 -0.04 16 11 C -0.12 -5.97 9.92 22.11 0.22 -5.75 16 12 C -0.20 -10.58 9.74 22.48 0.22 -10.36 16 13 C 0.06 3.11 5.57 -21.28 -0.12 2.99 16 14 C -0.50 -27.66 9.04 23.40 0.21 -27.45 16 15 H 0.08 4.06 7.91 -2.91 -0.02 4.03 16 16 C 0.03 1.75 5.13 85.24 0.44 2.19 16 17 N -0.83 -44.07 10.96 21.82 0.24 -43.84 16 18 Si 0.98 38.76 29.60 68.60 2.03 40.79 16 19 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 20 H -0.27 -9.93 7.11 99.48 0.71 -9.23 16 21 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 22 C -0.15 -8.43 8.64 22.48 0.19 -8.24 16 23 C -0.18 -8.61 8.96 22.11 0.20 -8.41 16 24 O -0.39 -12.10 11.04 -148.60 -1.64 -13.74 16 25 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16 28 H 0.08 1.18 7.86 -2.39 -0.02 1.16 16 29 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.08 1.47 7.87 -2.39 -0.02 1.45 16 32 H 0.08 2.36 7.65 -2.39 -0.02 2.35 16 33 H 0.05 1.85 7.64 -2.38 -0.02 1.83 16 34 H 0.12 5.11 8.06 -2.91 -0.02 5.08 16 35 H 0.11 5.29 8.06 -2.91 -0.02 5.27 16 36 H 0.29 13.78 8.30 -92.71 -0.77 13.01 16 37 H 0.11 6.06 6.16 -2.91 -0.02 6.05 16 38 H 0.12 5.00 6.27 -2.91 -0.02 4.98 16 Total: -1.00 -65.10 314.16 3.92 -61.18 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: 1.04 Total: 26.25 kcal Atomic # 6 Polarization: -58.40 SS G_CDS: 3.17 Total: -55.23 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.24 Total: -43.84 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -2.55 Total: -29.15 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.79 kcal Total: -65.10 3.92 -61.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232001709.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.492 kcal (2) G-P(sol) polarization free energy of solvation -65.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds