Wall clock time and date at job start Mon Mar 30 2020 06:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50700 * 109.47029 * 2 1 4 4 O 1.20758 * 119.99881 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99583 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47071 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47636 * 179.97438 * 6 5 3 8 8 O 1.42891 * 109.47658 * 179.97438 * 7 6 5 9 9 C 1.35679 * 117.00343 * 180.02562 * 8 7 6 10 10 C 1.39315 * 119.81222 * 359.72017 * 9 8 7 11 11 C 1.36439 * 120.17874 * 179.76523 * 10 9 8 12 12 C 1.40837 * 119.81377 * 0.51160 * 11 10 9 13 13 C 1.41211 * 120.17994 * 179.71887 * 12 11 10 14 14 H 1.08003 * 119.99873 * 155.16566 * 13 12 11 15 15 C 1.39892 * 120.00133 * 335.17238 * 13 12 11 16 16 N 1.30883 * 119.99904 * 342.15290 * 15 13 12 17 17 Si 1.86793 * 120.00410 * 162.15773 * 15 13 12 18 18 H 1.48504 * 109.47386 * 94.64900 * 17 15 13 19 19 H 1.48501 * 109.47318 * 214.65505 * 17 15 13 20 20 H 1.48504 * 109.46872 * 334.65146 * 17 15 13 21 21 C 1.40837 * 119.63910 * 359.74424 * 12 11 10 22 22 C 1.36436 * 119.81253 * 359.97438 * 21 12 11 23 23 H 1.08996 * 109.47587 * 300.00946 * 1 2 3 24 24 H 1.09004 * 109.46773 * 60.00138 * 1 2 3 25 25 H 1.08993 * 109.47470 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47111 * 239.99220 * 2 1 3 27 27 H 1.09000 * 109.46088 * 119.99743 * 2 1 3 28 28 H 1.08997 * 109.47201 * 59.99315 * 5 3 2 29 29 H 1.09003 * 109.46782 * 299.99560 * 5 3 2 30 30 H 1.09004 * 109.47342 * 59.99051 * 6 5 3 31 31 H 1.09001 * 109.47263 * 300.00093 * 6 5 3 32 32 H 1.09006 * 109.46722 * 59.99612 * 7 6 5 33 33 H 1.09003 * 109.46847 * 300.00172 * 7 6 5 34 34 H 1.07993 * 119.90914 * 0.02562 * 10 9 8 35 35 H 1.08002 * 120.09508 * 180.25458 * 11 10 9 36 36 H 0.96995 * 120.00354 * 180.02562 * 16 15 13 37 37 H 1.08003 * 120.08746 * 179.97438 * 21 12 11 38 38 H 1.08000 * 119.90545 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2476 2.3387 -0.0005 5 6 3.5140 1.6961 -0.0006 6 6 3.7519 3.2075 -0.0011 7 6 5.2561 3.4871 -0.0011 8 8 5.4783 4.8986 -0.0021 9 6 6.7683 5.3192 -0.0028 10 6 7.8014 4.3847 0.0035 11 6 9.1013 4.7993 -0.0019 12 6 9.3971 6.1762 -0.0030 13 6 10.7397 6.6139 -0.0026 14 1 10.9902 7.5880 -0.3962 15 6 11.7452 5.7858 0.5074 16 7 11.4334 4.7825 1.2880 17 14 13.5328 6.1120 0.0747 18 1 14.1564 6.9400 1.1381 19 1 14.2585 4.8213 -0.0372 20 1 13.6046 6.8342 -1.2209 21 6 8.3466 7.1143 -0.0040 22 6 7.0522 6.6831 -0.0043 23 1 -0.3634 0.5139 0.8898 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 3.9648 1.2573 -0.8907 29 1 3.9654 1.2572 0.8892 30 1 3.3010 3.6466 0.8888 31 1 3.3005 3.6461 -0.8911 32 1 5.7073 3.0479 -0.8909 33 1 5.7071 3.0486 0.8892 34 1 7.5729 3.3292 0.0085 35 1 9.9012 4.0736 -0.0011 36 1 12.1306 4.2086 1.6420 37 1 8.5651 8.1720 -0.0044 38 1 6.2454 7.4011 -0.0046 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232884560.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:12 Heat of formation + Delta-G solvation = -79.611020 kcal Electronic energy + Delta-G solvation = -18364.496555 eV Core-core repulsion = 15364.389551 eV Total energy + Delta-G solvation = -3000.107005 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.85447 -38.74336 -36.48824 -33.91050 -33.20544 -33.01151 -29.63935 -29.25767 -27.71388 -24.93985 -24.17356 -21.98811 -20.86209 -20.16455 -19.57832 -17.34360 -16.94342 -16.35751 -16.32148 -15.36591 -15.27727 -14.84064 -14.26519 -14.00572 -13.92706 -13.08188 -12.89601 -12.75239 -12.46732 -12.18381 -12.05775 -11.95888 -11.79952 -11.61783 -11.48429 -11.16703 -11.05907 -10.89957 -10.82011 -10.49129 -9.85228 -9.78884 -9.74212 -9.35277 -8.99788 -7.64047 -6.99421 -6.72112 -4.24041 1.79063 2.77820 2.97710 3.08206 3.12666 3.22390 3.62677 3.95635 4.24189 4.62573 4.62779 4.74723 4.84263 4.94116 5.14659 5.24146 5.45681 5.48202 5.58361 5.60947 5.66749 5.68391 5.70245 5.87616 6.13563 6.16007 6.22939 6.31580 6.75761 6.90977 7.07910 7.29201 7.34440 7.43138 7.57439 7.92304 8.01385 8.16994 8.46933 8.66900 8.91197 9.00886 10.22810 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.045693 B = 0.002989 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.639903 B = 9366.263570 C = 9878.718222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.176 4.176 3 C 0.354 3.646 4 O -0.450 6.450 5 C -0.170 4.170 6 C -0.110 4.110 7 C 0.069 3.931 8 O -0.330 6.330 9 C -0.008 4.008 10 C -0.174 4.174 11 C -0.134 4.134 12 C 0.086 3.914 13 C -0.463 4.463 14 H 0.077 0.923 15 C 0.074 3.926 16 N -0.801 5.801 17 Si 0.906 3.094 18 H -0.271 1.271 19 H -0.276 1.276 20 H -0.261 1.261 21 C -0.196 4.196 22 C -0.114 4.114 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.279 0.721 37 H 0.100 0.900 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.790 -10.842 -1.784 16.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.214 4.214 3 C 0.229 3.771 4 O -0.323 6.323 5 C -0.207 4.207 6 C -0.147 4.147 7 C -0.007 4.007 8 O -0.246 6.246 9 C -0.051 4.051 10 C -0.193 4.193 11 C -0.154 4.154 12 C 0.084 3.916 13 C -0.493 4.493 14 H 0.095 0.905 15 C -0.142 4.142 16 N -0.427 5.427 17 Si 0.731 3.269 18 H -0.197 1.197 19 H -0.201 1.201 20 H -0.185 1.185 21 C -0.215 4.215 22 C -0.133 4.133 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.112 0.888 35 H 0.138 0.862 36 H 0.090 0.910 37 H 0.118 0.882 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.266 -10.414 -1.641 16.174 hybrid contribution 1.180 -0.320 -0.024 1.223 sum -11.085 -10.734 -1.665 15.520 Atomic orbital electron populations 1.21598 0.93933 1.01677 1.03074 1.22076 0.98256 0.96348 1.04680 1.24648 0.91151 0.90832 0.70488 1.90409 1.59056 1.47758 1.35082 1.22031 0.95335 0.98322 1.05033 1.21291 0.95256 0.93862 1.04338 1.22408 0.95253 0.82535 1.00520 1.85793 1.25417 1.22076 1.91285 1.18585 0.81269 0.93249 1.12012 1.20609 0.93983 0.96638 1.08048 1.20938 0.94185 0.96611 1.03662 1.17600 0.92873 0.91288 0.89814 1.19458 0.91240 1.02502 1.36121 0.90511 1.25875 1.01563 0.94095 0.92658 1.69842 1.35605 1.14558 1.22729 0.86338 0.81789 0.78713 0.80085 1.19656 1.20146 1.18494 1.20604 0.91612 0.98100 1.11223 1.19628 0.96303 0.91709 1.05656 0.92164 0.92180 0.92174 0.88443 0.88434 0.88130 0.88100 0.90675 0.90690 0.93202 0.93119 0.88769 0.86154 0.91049 0.88206 0.88515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.20 37.16 0.34 -0.72 16 2 C -0.18 -1.15 6.36 -27.88 -0.18 -1.33 16 3 C 0.35 3.46 7.16 -29.03 -0.21 3.25 16 4 O -0.45 -6.16 15.61 6.00 0.09 -6.07 16 5 C -0.17 -1.56 5.64 -27.88 -0.16 -1.72 16 6 C -0.11 -1.46 4.87 -26.73 -0.13 -1.59 16 7 C 0.07 1.12 4.73 37.16 0.18 1.29 16 8 O -0.33 -6.96 10.12 -18.74 -0.19 -7.15 16 9 C -0.01 -0.19 6.71 -38.78 -0.26 -0.45 16 10 C -0.17 -4.13 8.96 -39.83 -0.36 -4.48 16 11 C -0.13 -3.52 8.64 -39.25 -0.34 -3.86 16 12 C 0.09 2.33 5.57 -106.80 -0.60 1.74 16 13 C -0.46 -12.37 9.04 -37.83 -0.34 -12.71 16 14 H 0.08 1.97 7.91 -52.48 -0.41 1.55 16 15 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 16 N -0.80 -20.79 10.97 55.54 0.61 -20.18 16 17 Si 0.91 18.72 29.59 -169.99 -5.03 13.69 16 18 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 19 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 20 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 21 C -0.20 -4.91 9.74 -39.25 -0.38 -5.29 16 22 C -0.11 -2.73 9.92 -39.83 -0.40 -3.12 16 23 H 0.06 0.50 8.10 -51.93 -0.42 0.07 16 24 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 31 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 32 H 0.05 0.77 7.66 -51.93 -0.40 0.37 16 33 H 0.05 0.80 7.64 -51.93 -0.40 0.40 16 34 H 0.09 1.96 6.27 -52.49 -0.33 1.64 16 35 H 0.12 3.21 6.18 -52.49 -0.32 2.89 16 36 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 37 H 0.10 2.32 8.06 -52.48 -0.42 1.90 16 38 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 322.46 15.07 4.86 4.86 Total: -1.00 -30.34 322.46 -8.21 -38.55 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -5.64 Total: 3.50 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: -2.91 Total: -27.20 kcal Atomic # 7 Polarization: -20.79 SS G_CDS: 0.61 Total: -20.18 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.10 Total: -13.22 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.34 -8.21 -38.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232884560.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.057 kcal (2) G-P(sol) polarization free energy of solvation -30.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds