Wall clock time and date at job start Mon Mar 30 2020 06:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50700 * 109.47029 * 2 1 4 4 O 1.20758 * 119.99881 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99583 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47071 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47636 * 179.97438 * 6 5 3 8 8 O 1.42891 * 109.47658 * 179.97438 * 7 6 5 9 9 C 1.35679 * 117.00343 * 180.02562 * 8 7 6 10 10 C 1.39315 * 119.81222 * 359.72017 * 9 8 7 11 11 C 1.36439 * 120.17874 * 179.76523 * 10 9 8 12 12 C 1.40837 * 119.81377 * 0.51160 * 11 10 9 13 13 C 1.41211 * 120.17994 * 179.71887 * 12 11 10 14 14 H 1.08003 * 119.99873 * 155.16566 * 13 12 11 15 15 C 1.39892 * 120.00133 * 335.17238 * 13 12 11 16 16 N 1.30883 * 119.99904 * 342.15290 * 15 13 12 17 17 Si 1.86793 * 120.00410 * 162.15773 * 15 13 12 18 18 H 1.48504 * 109.47386 * 94.64900 * 17 15 13 19 19 H 1.48501 * 109.47318 * 214.65505 * 17 15 13 20 20 H 1.48504 * 109.46872 * 334.65146 * 17 15 13 21 21 C 1.40837 * 119.63910 * 359.74424 * 12 11 10 22 22 C 1.36436 * 119.81253 * 359.97438 * 21 12 11 23 23 H 1.08996 * 109.47587 * 300.00946 * 1 2 3 24 24 H 1.09004 * 109.46773 * 60.00138 * 1 2 3 25 25 H 1.08993 * 109.47470 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47111 * 239.99220 * 2 1 3 27 27 H 1.09000 * 109.46088 * 119.99743 * 2 1 3 28 28 H 1.08997 * 109.47201 * 59.99315 * 5 3 2 29 29 H 1.09003 * 109.46782 * 299.99560 * 5 3 2 30 30 H 1.09004 * 109.47342 * 59.99051 * 6 5 3 31 31 H 1.09001 * 109.47263 * 300.00093 * 6 5 3 32 32 H 1.09006 * 109.46722 * 59.99612 * 7 6 5 33 33 H 1.09003 * 109.46847 * 300.00172 * 7 6 5 34 34 H 1.07993 * 119.90914 * 0.02562 * 10 9 8 35 35 H 1.08002 * 120.09508 * 180.25458 * 11 10 9 36 36 H 0.96995 * 120.00354 * 180.02562 * 16 15 13 37 37 H 1.08003 * 120.08746 * 179.97438 * 21 12 11 38 38 H 1.08000 * 119.90545 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2476 2.3387 -0.0005 5 6 3.5140 1.6961 -0.0006 6 6 3.7519 3.2075 -0.0011 7 6 5.2561 3.4871 -0.0011 8 8 5.4783 4.8986 -0.0021 9 6 6.7683 5.3192 -0.0028 10 6 7.8014 4.3847 0.0035 11 6 9.1013 4.7993 -0.0019 12 6 9.3971 6.1762 -0.0030 13 6 10.7397 6.6139 -0.0026 14 1 10.9902 7.5880 -0.3962 15 6 11.7452 5.7858 0.5074 16 7 11.4334 4.7825 1.2880 17 14 13.5328 6.1120 0.0747 18 1 14.1564 6.9400 1.1381 19 1 14.2585 4.8213 -0.0372 20 1 13.6046 6.8342 -1.2209 21 6 8.3466 7.1143 -0.0040 22 6 7.0522 6.6831 -0.0043 23 1 -0.3634 0.5139 0.8898 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 3.9648 1.2573 -0.8907 29 1 3.9654 1.2572 0.8892 30 1 3.3010 3.6466 0.8888 31 1 3.3005 3.6461 -0.8911 32 1 5.7073 3.0479 -0.8909 33 1 5.7071 3.0486 0.8892 34 1 7.5729 3.3292 0.0085 35 1 9.9012 4.0736 -0.0011 36 1 12.1306 4.2086 1.6420 37 1 8.5651 8.1720 -0.0044 38 1 6.2454 7.4011 -0.0046 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232884560.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:11 Heat of formation + Delta-G solvation = -95.586181 kcal Electronic energy + Delta-G solvation = -18365.189290 eV Core-core repulsion = 15364.389551 eV Total energy + Delta-G solvation = -3000.799740 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.77097 -40.39048 -38.25165 -35.42429 -34.58756 -33.70054 -31.54429 -31.06701 -28.85450 -26.65985 -25.22194 -23.35283 -22.60238 -21.74188 -20.34272 -19.26794 -18.60882 -17.35354 -17.33205 -16.89570 -16.41169 -16.05417 -15.77839 -15.55587 -14.92273 -14.79478 -14.20401 -13.99540 -13.93530 -13.70296 -13.35880 -13.18780 -12.83289 -12.75658 -12.69193 -12.58996 -12.38141 -12.22309 -12.05550 -11.94468 -11.66068 -11.42565 -11.20632 -10.85396 -10.52595 -9.57070 -8.91051 -8.60072 -6.22414 0.93761 1.04030 1.06223 1.40395 1.50025 1.56346 2.23547 2.50487 2.72480 3.20615 3.69976 3.90500 3.93570 4.12899 4.19076 4.28771 4.28918 4.42080 4.45001 4.50350 4.54272 4.73815 4.88046 4.98398 5.00463 5.02850 5.03610 5.11072 5.15393 5.21761 5.32412 5.37121 5.53745 5.66378 5.97488 6.06253 6.23918 6.56672 6.62886 6.80115 6.95251 7.10738 8.37166 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.045693 B = 0.002989 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.639903 B = 9366.263570 C = 9878.718222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.170 4.170 3 C 0.355 3.645 4 O -0.500 6.500 5 C -0.166 4.166 6 C -0.103 4.103 7 C 0.061 3.939 8 O -0.343 6.343 9 C -0.003 4.003 10 C -0.174 4.174 11 C -0.155 4.155 12 C 0.054 3.946 13 C -0.499 4.499 14 H 0.075 0.925 15 C 0.034 3.966 16 N -0.831 5.831 17 Si 0.982 3.018 18 H -0.264 1.264 19 H -0.265 1.265 20 H -0.260 1.260 21 C -0.206 4.206 22 C -0.125 4.125 23 H 0.043 0.957 24 H 0.044 0.956 25 H 0.081 0.919 26 H 0.124 0.876 27 H 0.123 0.877 28 H 0.127 0.873 29 H 0.125 0.875 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.123 0.877 35 H 0.109 0.891 36 H 0.288 0.712 37 H 0.109 0.891 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.495 -12.727 -1.977 17.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.207 4.207 3 C 0.234 3.766 4 O -0.377 6.377 5 C -0.203 4.203 6 C -0.141 4.141 7 C -0.014 4.014 8 O -0.259 6.259 9 C -0.047 4.047 10 C -0.192 4.192 11 C -0.174 4.174 12 C 0.052 3.948 13 C -0.529 4.529 14 H 0.093 0.907 15 C -0.180 4.180 16 N -0.458 5.458 17 Si 0.803 3.197 18 H -0.189 1.189 19 H -0.190 1.190 20 H -0.184 1.184 21 C -0.226 4.226 22 C -0.144 4.144 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.100 0.900 26 H 0.142 0.858 27 H 0.141 0.859 28 H 0.145 0.855 29 H 0.143 0.857 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.140 0.860 35 H 0.127 0.873 36 H 0.098 0.902 37 H 0.127 0.873 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.989 -12.321 -1.832 17.289 hybrid contribution 0.936 0.219 0.055 0.962 sum -11.053 -12.102 -1.778 16.486 Atomic orbital electron populations 1.21625 0.94853 1.02537 1.01575 1.22127 0.97412 0.94151 1.07026 1.25180 0.91017 0.91913 0.68507 1.90412 1.60117 1.49435 1.37715 1.22089 0.95522 0.95193 1.07454 1.21235 0.92863 0.97010 1.02947 1.22769 0.97265 0.79953 1.01437 1.85797 1.23821 1.25336 1.90948 1.18720 0.82335 0.93263 1.10341 1.20836 0.93085 0.98271 1.07057 1.20936 0.94966 0.96244 1.05287 1.17974 0.93758 0.92185 0.90928 1.19708 0.92114 1.03291 1.37797 0.90668 1.26727 1.05874 0.93556 0.91845 1.69884 1.37426 1.15318 1.23135 0.85200 0.75864 0.78947 0.79721 1.18886 1.18971 1.18384 1.20797 0.91953 0.98504 1.11328 1.19915 0.96447 0.92717 1.05292 0.93757 0.93715 0.90046 0.85847 0.85924 0.85525 0.85685 0.92250 0.92050 0.91921 0.92284 0.85955 0.87309 0.90192 0.87292 0.86554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.20 71.98 0.66 -1.27 16 2 C -0.17 -1.69 6.36 29.85 0.19 -1.50 16 3 C 0.36 6.28 7.16 29.10 0.21 6.49 16 4 O -0.50 -13.64 15.61 -1.44 -0.02 -13.67 16 5 C -0.17 -2.57 5.64 29.85 0.17 -2.40 16 6 C -0.10 -2.60 4.87 30.59 0.15 -2.46 16 7 C 0.06 1.86 4.73 71.98 0.34 2.20 16 8 O -0.34 -14.12 10.12 -89.97 -0.91 -15.03 16 9 C 0.00 -0.13 6.71 22.79 0.15 0.02 16 10 C -0.17 -8.14 8.96 22.11 0.20 -7.95 16 11 C -0.15 -8.21 8.64 22.49 0.19 -8.01 16 12 C 0.05 2.96 5.57 -21.28 -0.12 2.84 16 13 C -0.50 -27.23 9.04 23.40 0.21 -27.02 16 14 H 0.08 3.95 7.91 -2.91 -0.02 3.93 16 15 C 0.03 1.71 5.13 85.23 0.44 2.15 16 16 N -0.83 -43.45 10.97 21.82 0.24 -43.21 16 17 Si 0.98 38.23 29.59 68.60 2.03 40.26 16 18 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 19 H -0.27 -9.76 7.11 99.48 0.71 -9.06 16 20 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 21 C -0.21 -10.49 9.74 22.48 0.22 -10.27 16 22 C -0.13 -5.95 9.92 22.11 0.22 -5.73 16 23 H 0.04 0.70 8.10 -2.39 -0.02 0.68 16 24 H 0.04 0.71 8.10 -2.38 -0.02 0.69 16 25 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.06 1.68 8.10 -2.39 -0.02 1.66 16 31 H 0.06 1.71 8.10 -2.39 -0.02 1.69 16 32 H 0.06 1.77 7.66 -2.38 -0.02 1.75 16 33 H 0.06 1.72 7.64 -2.39 -0.02 1.70 16 34 H 0.12 4.89 6.27 -2.91 -0.02 4.87 16 35 H 0.11 5.93 6.18 -2.91 -0.02 5.91 16 36 H 0.29 13.51 8.30 -92.71 -0.77 12.74 16 37 H 0.11 5.16 8.06 -2.91 -0.02 5.13 16 38 H 0.12 4.96 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -67.32 322.46 5.60 -61.71 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 1.03 Total: 22.85 kcal Atomic # 6 Polarization: -56.15 SS G_CDS: 3.23 Total: -52.92 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 0.24 Total: -43.21 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -0.93 Total: -28.70 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 2.03 Total: 40.26 kcal Total: -67.32 5.60 -61.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232884560.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.872 kcal (2) G-P(sol) polarization free energy of solvation -67.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds