Wall clock time and date at job start Mon Mar 30 2020 06:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46966 * 2 1 4 4 O 1.42905 * 109.46959 * 240.00879 * 2 1 3 5 5 C 1.50693 * 109.47539 * 120.00357 * 2 1 3 6 6 C 1.38341 * 120.44943 * 93.41276 * 5 2 1 7 7 C 1.38847 * 118.50243 * 179.71495 * 6 5 2 8 8 C 1.38063 * 119.32911 * 0.58930 * 7 6 5 9 9 N 1.31943 * 120.85413 * 359.67246 * 8 7 6 10 10 C 1.32433 * 121.62030 * 0.02904 * 9 8 7 11 11 N 1.39008 * 119.70249 * 180.02562 * 10 9 8 12 12 C 1.46902 * 111.00014 * 64.71987 * 11 10 9 13 13 C 1.50699 * 109.46859 * 67.60907 * 12 11 10 14 14 H 1.07995 * 120.00478 * 4.88133 * 13 12 11 15 15 C 1.37880 * 119.99877 * 184.87963 * 13 12 11 16 16 N 1.31509 * 120.00130 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99830 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47278 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47292 * 119.99702 * 17 15 13 20 20 H 1.48503 * 109.47014 * 239.99923 * 17 15 13 21 21 C 1.46900 * 110.99936 * 300.76856 * 11 10 9 22 22 C 1.53000 * 117.49521 * 252.77305 * 21 11 10 23 23 C 1.53001 * 60.00286 * 252.51140 * 22 21 11 24 24 H 1.08996 * 109.47190 * 299.99185 * 1 2 3 25 25 H 1.09007 * 109.47420 * 59.99821 * 1 2 3 26 26 H 1.09005 * 109.46786 * 179.97438 * 1 2 3 27 27 H 0.96699 * 113.99690 * 299.98910 * 4 2 1 28 28 H 1.07998 * 120.74777 * 359.97438 * 6 5 2 29 29 H 1.07997 * 120.33355 * 180.25696 * 7 6 5 30 30 H 1.07998 * 119.57672 * 179.70323 * 8 7 6 31 31 H 1.09002 * 109.47259 * 187.60506 * 12 11 10 32 32 H 1.08998 * 109.47628 * 307.61074 * 12 11 10 33 33 H 0.96999 * 120.00039 * 179.97438 * 16 15 13 34 34 H 1.08998 * 115.55224 * 38.48369 * 21 11 10 35 35 H 1.08996 * 117.50337 * 0.02562 * 22 21 11 36 36 H 1.09006 * 117.49334 * 145.02343 * 22 21 11 37 37 H 1.09001 * 117.50411 * 252.51649 * 23 22 21 38 38 H 1.09004 * 117.49938 * 107.48884 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.0324 -0.7104 1.2303 6 6 2.3331 -2.0601 1.1869 7 6 2.7988 -2.6727 2.3426 8 6 2.9355 -1.9259 3.4958 9 7 2.6359 -0.6410 3.5094 10 6 2.1946 -0.0194 2.4265 11 7 1.8913 1.3358 2.4857 12 6 3.0949 2.1334 2.7560 13 6 4.0232 2.0592 1.5711 14 1 3.7136 1.5438 0.6740 15 6 5.2677 2.6495 1.6324 16 7 5.6446 3.2776 2.7246 17 14 6.4181 2.5581 0.1634 18 1 5.7616 1.8018 -0.9331 19 1 6.7353 3.9318 -0.3031 20 1 7.6719 1.8676 0.5587 21 6 0.8495 1.5989 3.4874 22 6 -0.5485 1.9529 2.9765 23 6 0.3314 3.0336 3.6079 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7211 -1.5951 -1.2331 28 1 2.2123 -2.6236 0.2735 29 1 3.0464 -3.7238 2.3410 30 1 3.2929 -2.3994 4.3983 31 1 2.8114 3.1713 2.9310 32 1 3.6003 1.7410 3.6385 33 1 6.5203 3.6925 2.7678 34 1 0.9173 1.0099 4.4020 35 1 -0.6955 1.9901 1.8971 36 1 -1.4009 1.5965 3.5550 37 1 0.0581 3.3882 4.6017 38 1 0.7636 3.7822 2.9438 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235542197.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:40 Heat of formation + Delta-G solvation = 23.793903 kcal Electronic energy + Delta-G solvation = -20593.196642 eV Core-core repulsion = 17629.866363 eV Total energy + Delta-G solvation = -2963.330279 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.22951 -37.47372 -36.93236 -34.06985 -32.41776 -32.09751 -30.38799 -28.67101 -26.64617 -23.98295 -23.25069 -22.14267 -21.69006 -20.97879 -19.69278 -17.32827 -16.73645 -16.44847 -15.69537 -15.22680 -14.81126 -14.43288 -14.38652 -14.08201 -13.56222 -13.11152 -12.91397 -12.53791 -12.19288 -12.11739 -11.98003 -11.70569 -11.47919 -10.98276 -10.90888 -10.62679 -10.61120 -10.15887 -10.09722 -10.00423 -9.67094 -9.27685 -9.13147 -9.03036 -8.44347 -8.17762 -7.61594 -6.02588 -4.04307 1.60002 1.73663 3.32627 3.40111 3.48162 4.19460 4.25842 4.35058 4.52807 4.74465 4.88140 5.13825 5.25515 5.34598 5.39982 5.42920 5.45558 5.52441 5.58743 5.65649 5.83835 5.96260 5.98650 6.08787 6.17395 6.25761 6.40235 6.49547 6.54238 6.62178 6.79869 6.95353 7.22215 7.44863 7.74529 7.91446 8.06085 8.15421 8.41615 8.55174 9.03332 9.60240 11.07848 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.013845 B = 0.009336 C = 0.007885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.920777 B = 2998.376911 C = 3550.275570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.152 3.848 3 H 0.134 0.866 4 O -0.558 6.558 5 C -0.138 4.138 6 C -0.075 4.075 7 C -0.193 4.193 8 C 0.105 3.895 9 N -0.507 5.507 10 C 0.355 3.645 11 N -0.467 5.467 12 C 0.199 3.801 13 C -0.513 4.513 14 H 0.065 0.935 15 C 0.061 3.939 16 N -0.894 5.894 17 Si 0.892 3.108 18 H -0.269 1.269 19 H -0.283 1.283 20 H -0.285 1.285 21 C 0.018 3.982 22 C -0.179 4.179 23 C -0.167 4.167 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.047 0.953 27 H 0.361 0.639 28 H 0.126 0.874 29 H 0.127 0.873 30 H 0.146 0.854 31 H 0.037 0.963 32 H 0.013 0.987 33 H 0.261 0.739 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.887 -9.076 -1.393 14.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.093 3.907 3 H 0.151 0.849 4 O -0.363 6.363 5 C -0.142 4.142 6 C -0.102 4.102 7 C -0.213 4.213 8 C -0.054 4.054 9 N -0.219 5.219 10 C 0.126 3.874 11 N -0.191 5.191 12 C 0.076 3.924 13 C -0.552 4.552 14 H 0.083 0.917 15 C -0.141 4.141 16 N -0.533 5.533 17 Si 0.719 3.281 18 H -0.193 1.193 19 H -0.209 1.209 20 H -0.212 1.212 21 C -0.090 4.090 22 C -0.217 4.217 23 C -0.204 4.204 24 H 0.096 0.904 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.207 0.793 28 H 0.144 0.856 29 H 0.145 0.855 30 H 0.163 0.837 31 H 0.055 0.945 32 H 0.032 0.968 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.117 0.883 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.534 -7.736 -1.106 13.116 hybrid contribution 0.902 -1.311 -0.442 1.651 sum -9.632 -9.047 -1.548 13.305 Atomic orbital electron populations 1.22518 0.96027 1.01595 1.03260 1.20794 0.92343 0.97471 0.80060 0.84858 1.86717 1.77445 1.28102 1.44008 1.21116 1.02026 0.94026 0.96985 1.21119 0.97071 0.93856 0.98106 1.21868 1.04114 1.01039 0.94260 1.22429 0.95912 0.89548 0.97484 1.67799 1.11491 1.10669 1.31963 1.19527 0.89578 0.90417 0.87836 1.60222 1.12394 1.01172 1.45288 1.19875 0.83483 0.91991 0.97052 1.21219 0.99195 1.34843 0.99919 0.91651 1.24918 0.97849 0.95313 0.96045 1.69968 1.20501 1.36023 1.26847 0.86517 0.80714 0.77805 0.83020 1.19285 1.20923 1.21164 1.22336 0.92221 0.98984 0.95454 1.23146 0.93398 1.03996 1.01179 1.22980 1.03199 0.92321 1.01909 0.90401 0.91932 0.93359 0.79257 0.85576 0.85534 0.83703 0.94457 0.96850 0.92977 0.89244 0.88267 0.89607 0.89214 0.87866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.44 9.52 37.16 0.35 -2.09 16 2 C 0.15 2.63 3.40 -27.89 -0.09 2.54 16 3 H 0.13 2.78 6.20 -51.93 -0.32 2.46 16 4 O -0.56 -9.13 13.03 -35.23 -0.46 -9.59 16 5 C -0.14 -2.53 4.94 -104.27 -0.52 -3.04 16 6 C -0.08 -1.16 9.41 -39.32 -0.37 -1.53 16 7 C -0.19 -2.85 10.10 -39.42 -0.40 -3.25 16 8 C 0.10 1.78 11.17 -17.57 -0.20 1.58 16 9 N -0.51 -10.57 9.34 -12.44 -0.12 -10.68 16 10 C 0.36 7.42 4.64 -155.00 -0.72 6.70 16 11 N -0.47 -9.99 3.64 -166.99 -0.61 -10.60 16 12 C 0.20 5.19 4.62 -4.98 -0.02 5.17 16 13 C -0.51 -14.49 8.71 -34.44 -0.30 -14.79 16 14 H 0.07 1.85 6.03 -52.49 -0.32 1.53 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 17 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 18 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 C 0.02 0.34 5.08 -67.71 -0.34 0.00 16 22 C -0.18 -2.66 9.87 -26.73 -0.26 -2.92 16 23 C -0.17 -2.71 9.65 -26.73 -0.26 -2.97 16 24 H 0.08 1.11 5.54 -51.93 -0.29 0.83 16 25 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.36 4.19 7.38 45.56 0.34 4.52 16 28 H 0.13 1.49 6.54 -52.49 -0.34 1.15 16 29 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.15 2.01 8.06 -52.49 -0.42 1.59 16 31 H 0.04 1.01 6.81 -51.93 -0.35 0.66 16 32 H 0.01 0.40 7.74 -51.93 -0.40 -0.01 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.09 1.71 7.71 -51.93 -0.40 1.31 16 35 H 0.10 1.45 6.30 -51.93 -0.33 1.12 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.10 1.82 7.54 -51.93 -0.39 1.43 16 LS Contribution 311.54 15.07 4.69 4.69 Total: -1.00 -32.34 311.54 -8.48 -40.82 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -4.48 Total: 7.13 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -3.23 Total: -12.96 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: 0.01 Total: -47.41 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: -0.46 Total: -9.59 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.34 -8.48 -40.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235542197.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.616 kcal (2) G-P(sol) polarization free energy of solvation -32.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds