Wall clock time and date at job start Mon Mar 30 2020 06:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46966 * 2 1 4 4 O 1.42905 * 109.46959 * 240.00879 * 2 1 3 5 5 C 1.50693 * 109.47539 * 120.00357 * 2 1 3 6 6 C 1.38341 * 120.44943 * 93.41276 * 5 2 1 7 7 C 1.38847 * 118.50243 * 179.71495 * 6 5 2 8 8 C 1.38063 * 119.32911 * 0.58930 * 7 6 5 9 9 N 1.31943 * 120.85413 * 359.67246 * 8 7 6 10 10 C 1.32433 * 121.62030 * 0.02904 * 9 8 7 11 11 N 1.39008 * 119.70249 * 180.02562 * 10 9 8 12 12 C 1.46902 * 111.00014 * 64.71987 * 11 10 9 13 13 C 1.50699 * 109.46859 * 67.60907 * 12 11 10 14 14 H 1.07995 * 120.00478 * 4.88133 * 13 12 11 15 15 C 1.37880 * 119.99877 * 184.87963 * 13 12 11 16 16 N 1.31509 * 120.00130 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99830 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47278 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47292 * 119.99702 * 17 15 13 20 20 H 1.48503 * 109.47014 * 239.99923 * 17 15 13 21 21 C 1.46900 * 110.99936 * 300.76856 * 11 10 9 22 22 C 1.53000 * 117.49521 * 252.77305 * 21 11 10 23 23 C 1.53001 * 60.00286 * 252.51140 * 22 21 11 24 24 H 1.08996 * 109.47190 * 299.99185 * 1 2 3 25 25 H 1.09007 * 109.47420 * 59.99821 * 1 2 3 26 26 H 1.09005 * 109.46786 * 179.97438 * 1 2 3 27 27 H 0.96699 * 113.99690 * 299.98910 * 4 2 1 28 28 H 1.07998 * 120.74777 * 359.97438 * 6 5 2 29 29 H 1.07997 * 120.33355 * 180.25696 * 7 6 5 30 30 H 1.07998 * 119.57672 * 179.70323 * 8 7 6 31 31 H 1.09002 * 109.47259 * 187.60506 * 12 11 10 32 32 H 1.08998 * 109.47628 * 307.61074 * 12 11 10 33 33 H 0.96999 * 120.00039 * 179.97438 * 16 15 13 34 34 H 1.08998 * 115.55224 * 38.48369 * 21 11 10 35 35 H 1.08996 * 117.50337 * 0.02562 * 22 21 11 36 36 H 1.09006 * 117.49334 * 145.02343 * 22 21 11 37 37 H 1.09001 * 117.50411 * 252.51649 * 23 22 21 38 38 H 1.09004 * 117.49938 * 107.48884 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.0324 -0.7104 1.2303 6 6 2.3331 -2.0601 1.1869 7 6 2.7988 -2.6727 2.3426 8 6 2.9355 -1.9259 3.4958 9 7 2.6359 -0.6410 3.5094 10 6 2.1946 -0.0194 2.4265 11 7 1.8913 1.3358 2.4857 12 6 3.0949 2.1334 2.7560 13 6 4.0232 2.0592 1.5711 14 1 3.7136 1.5438 0.6740 15 6 5.2677 2.6495 1.6324 16 7 5.6446 3.2776 2.7246 17 14 6.4181 2.5581 0.1634 18 1 5.7616 1.8018 -0.9331 19 1 6.7353 3.9318 -0.3031 20 1 7.6719 1.8676 0.5587 21 6 0.8495 1.5989 3.4874 22 6 -0.5485 1.9529 2.9765 23 6 0.3314 3.0336 3.6079 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7211 -1.5951 -1.2331 28 1 2.2123 -2.6236 0.2735 29 1 3.0464 -3.7238 2.3410 30 1 3.2929 -2.3994 4.3983 31 1 2.8114 3.1713 2.9310 32 1 3.6003 1.7410 3.6385 33 1 6.5203 3.6925 2.7678 34 1 0.9173 1.0099 4.4020 35 1 -0.6955 1.9901 1.8971 36 1 -1.4009 1.5965 3.5550 37 1 0.0581 3.3882 4.6017 38 1 0.7636 3.7822 2.9438 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235542197.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:40 Heat of formation + Delta-G solvation = 1.164860 kcal Electronic energy + Delta-G solvation = -20594.177911 eV Core-core repulsion = 17629.866363 eV Total energy + Delta-G solvation = -2964.311548 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.60795 -38.89615 -38.22078 -35.72345 -34.37473 -33.40274 -31.77995 -30.07195 -28.55254 -25.25066 -24.98314 -23.70392 -23.04951 -22.27394 -21.20319 -18.78873 -18.50977 -17.78298 -17.39094 -16.92117 -16.26419 -15.88299 -15.66440 -15.59661 -14.99067 -14.56525 -14.29259 -14.19175 -13.77736 -13.47574 -13.43720 -13.18243 -12.90349 -12.85670 -12.65950 -12.22975 -12.08521 -11.81634 -11.66010 -11.42288 -11.20130 -10.91258 -10.68953 -10.54690 -10.39501 -9.53881 -9.29360 -8.23892 -6.32649 0.26553 0.45164 1.33676 1.34497 1.49192 2.34651 2.81207 2.92319 2.99516 3.10748 3.56364 3.60538 3.96206 4.00610 4.03925 4.14881 4.22547 4.29973 4.38786 4.49922 4.57065 4.72522 4.78876 4.81129 4.95841 5.01519 5.10126 5.17482 5.23021 5.27662 5.34842 5.41826 5.48122 5.63503 5.74373 5.98729 6.31706 6.62983 6.84028 6.90621 7.18765 7.36233 8.87403 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.013845 B = 0.009336 C = 0.007885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.920777 B = 2998.376911 C = 3550.275570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.158 3.842 3 H 0.089 0.911 4 O -0.571 6.571 5 C -0.151 4.151 6 C -0.075 4.075 7 C -0.175 4.175 8 C 0.084 3.916 9 N -0.548 5.548 10 C 0.317 3.683 11 N -0.460 5.460 12 C 0.221 3.779 13 C -0.519 4.519 14 H 0.061 0.939 15 C 0.007 3.993 16 N -0.930 5.930 17 Si 0.958 3.042 18 H -0.267 1.267 19 H -0.273 1.273 20 H -0.281 1.281 21 C -0.015 4.015 22 C -0.141 4.141 23 C -0.169 4.169 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.384 0.616 28 H 0.169 0.831 29 H 0.173 0.827 30 H 0.169 0.831 31 H 0.015 0.985 32 H -0.032 1.032 33 H 0.263 0.737 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.941 -11.461 -3.006 16.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.099 3.901 3 H 0.106 0.894 4 O -0.378 6.378 5 C -0.155 4.155 6 C -0.100 4.100 7 C -0.194 4.194 8 C -0.074 4.074 9 N -0.261 5.261 10 C 0.089 3.911 11 N -0.183 5.183 12 C 0.097 3.903 13 C -0.557 4.557 14 H 0.080 0.920 15 C -0.191 4.191 16 N -0.571 5.571 17 Si 0.783 3.217 18 H -0.191 1.191 19 H -0.198 1.198 20 H -0.207 1.207 21 C -0.123 4.123 22 C -0.178 4.178 23 C -0.206 4.206 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.233 0.767 28 H 0.186 0.814 29 H 0.190 0.810 30 H 0.186 0.814 31 H 0.033 0.967 32 H -0.014 1.014 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.135 0.865 37 H 0.128 0.872 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.618 -10.141 -2.726 15.661 hybrid contribution 1.207 -0.697 0.101 1.398 sum -10.411 -10.838 -2.625 15.256 Atomic orbital electron populations 1.22405 0.93318 1.03267 1.03304 1.20495 0.94292 0.95294 0.80052 0.89365 1.86664 1.77893 1.29967 1.43324 1.21337 1.02404 0.95519 0.96197 1.21656 0.95547 0.92825 1.00018 1.22354 1.01373 1.02871 0.92820 1.23009 0.95978 0.88698 0.99724 1.67697 1.12787 1.12817 1.32806 1.19677 0.92208 0.90127 0.89123 1.60094 1.10555 1.01834 1.45776 1.19348 0.85151 0.91317 0.94517 1.21470 0.99789 1.34248 1.00230 0.92049 1.25787 0.99562 0.95024 0.98770 1.70092 1.21088 1.37051 1.28831 0.85494 0.78457 0.78221 0.79530 1.19082 1.19785 1.20672 1.22426 0.93989 1.00519 0.95404 1.23205 0.91971 1.00859 1.01754 1.23019 1.03531 0.91212 1.02888 0.91210 0.90976 0.90818 0.76661 0.81370 0.80971 0.81372 0.96711 1.01379 0.92776 0.90577 0.87866 0.86452 0.87208 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.24 9.52 71.98 0.69 -3.55 16 2 C 0.16 5.32 3.40 29.85 0.10 5.43 16 3 H 0.09 3.79 6.20 -2.38 -0.01 3.78 16 4 O -0.57 -17.37 13.03 -148.98 -1.94 -19.31 16 5 C -0.15 -5.39 4.94 -19.64 -0.10 -5.49 16 6 C -0.07 -2.06 9.41 22.44 0.21 -1.85 16 7 C -0.17 -4.57 10.10 22.37 0.23 -4.34 16 8 C 0.08 2.76 11.17 84.63 0.95 3.71 16 9 N -0.55 -23.42 9.34 -193.26 -1.81 -25.22 16 10 C 0.32 13.50 4.64 133.04 0.62 14.12 16 11 N -0.46 -20.60 3.64 -682.25 -2.48 -23.09 16 12 C 0.22 12.32 4.62 85.56 0.40 12.72 16 13 C -0.52 -30.53 8.71 25.60 0.22 -30.31 16 14 H 0.06 3.60 6.03 -2.91 -0.02 3.58 16 15 C 0.01 0.41 5.46 84.66 0.46 0.87 16 16 N -0.93 -57.92 13.29 21.45 0.28 -57.63 16 17 Si 0.96 46.64 29.54 68.60 2.03 48.67 16 18 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 21 C -0.02 -0.58 5.08 44.92 0.23 -0.35 16 22 C -0.14 -4.02 9.87 30.59 0.30 -3.72 16 23 C -0.17 -5.63 9.65 30.60 0.30 -5.33 16 24 H 0.07 1.89 5.54 -2.39 -0.01 1.88 16 25 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 26 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.38 7.41 7.38 -74.06 -0.55 6.86 16 28 H 0.17 3.10 6.54 -2.91 -0.02 3.08 16 29 H 0.17 2.89 8.06 -2.91 -0.02 2.86 16 30 H 0.17 4.45 8.06 -2.91 -0.02 4.42 16 31 H 0.01 0.87 6.81 -2.39 -0.02 0.85 16 32 H -0.03 -2.01 7.74 -2.39 -0.02 -2.03 16 33 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 34 H 0.08 3.08 7.71 -2.39 -0.02 3.06 16 35 H 0.10 2.90 6.30 -2.39 -0.02 2.88 16 36 H 0.12 2.64 8.14 -2.38 -0.02 2.62 16 37 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 38 H 0.08 3.11 7.54 -2.39 -0.02 3.09 16 Total: -1.00 -74.81 311.54 1.20 -73.60 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.53 Total: 21.09 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: 4.60 Total: -18.11 kcal Atomic # 7 Polarization: -101.94 SS G_CDS: -4.00 Total: -105.94 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -1.94 Total: -19.31 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -74.81 1.20 -73.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235542197.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.768 kcal (2) G-P(sol) polarization free energy of solvation -74.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds