Wall clock time and date at job start Mon Mar 30 2020 06:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46496 * 109.46633 * 2 1 4 4 C 1.34776 * 119.99876 * 269.99666 * 3 2 1 5 5 O 1.21588 * 119.99815 * 185.66661 * 4 3 2 6 6 N 1.34769 * 120.00173 * 5.67225 * 4 3 2 7 7 C 1.46507 * 120.00267 * 179.97438 * 6 4 3 8 8 C 1.50694 * 109.47130 * 179.97438 * 7 6 4 9 9 H 1.08005 * 120.00069 * 0.02562 * 8 7 6 10 10 C 1.37880 * 120.00131 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99792 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00241 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.46928 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47014 * 120.00458 * 12 10 8 15 15 H 1.48501 * 109.46915 * 240.00472 * 12 10 8 16 16 C 1.39945 * 120.00228 * 90.00422 * 3 2 1 17 17 C 1.38891 * 120.06864 * 236.62124 * 16 3 2 18 18 C 1.38088 * 119.93063 * 180.29492 * 17 16 3 19 19 C 1.38306 * 120.06763 * 359.44353 * 18 17 16 20 20 C 1.38255 * 120.13987 * 0.27934 * 19 18 17 21 21 C 1.50704 * 119.96622 * 179.97438 * 20 19 18 22 22 C 1.38136 * 120.07261 * 359.97438 * 20 19 18 23 23 H 1.08999 * 109.47055 * 299.99362 * 1 2 3 24 24 H 1.08995 * 109.46953 * 60.00171 * 1 2 3 25 25 H 1.09003 * 109.46531 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47024 * 240.00181 * 2 1 3 27 27 H 1.08995 * 109.46953 * 119.99829 * 2 1 3 28 28 H 0.97006 * 120.00056 * 359.97438 * 6 4 3 29 29 H 1.08992 * 109.46782 * 300.00009 * 7 6 4 30 30 H 1.08999 * 109.46772 * 59.99799 * 7 6 4 31 31 H 0.96997 * 119.99976 * 179.97438 * 11 10 8 32 32 H 1.07996 * 120.03452 * 0.02562 * 17 16 3 33 33 H 1.07992 * 119.97065 * 179.72328 * 18 17 16 34 34 H 1.08000 * 119.93177 * 180.25661 * 19 18 17 35 35 H 1.08995 * 109.47662 * 89.99765 * 21 20 19 36 36 H 1.09002 * 109.47107 * 210.00344 * 21 20 19 37 37 H 1.09007 * 109.47016 * 329.99884 * 21 20 19 38 38 H 1.07998 * 120.03614 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0165 -1.1672 5 8 2.7446 3.1241 -1.1698 6 7 1.9113 1.4243 -2.3315 7 6 2.1549 2.1151 -3.6003 8 6 1.6990 1.2439 -4.7422 9 1 1.2701 0.2729 -4.5428 10 6 1.8282 1.6869 -6.0415 11 7 2.3500 2.8694 -6.2843 12 14 1.2623 0.6073 -7.4570 13 1 0.7154 -0.6650 -6.9212 14 1 0.2074 1.3137 -8.2273 15 1 2.4140 0.3152 -8.3479 16 6 2.2516 2.0410 1.2119 17 6 1.6120 3.2435 1.4840 18 6 1.8490 3.8951 2.6782 19 6 2.7133 3.3458 3.6077 20 6 3.3470 2.1460 3.3423 21 6 4.2884 1.5512 4.3578 22 6 3.1182 1.4918 2.1474 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.5113 0.5406 -2.3295 29 1 1.6010 3.0536 -3.6151 30 1 3.2204 2.3204 -3.7033 31 1 2.4413 3.1809 -7.1983 32 1 0.9335 3.6706 0.7605 33 1 1.3555 4.8324 2.8884 34 1 2.8938 3.8552 4.5427 35 1 3.7320 0.8993 5.0311 36 1 5.0575 0.9732 3.8454 37 1 4.7568 2.3512 4.9313 38 1 3.6139 0.5549 1.9405 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000242842311.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:30 Heat of formation + Delta-G solvation = -8.061518 kcal Electronic energy + Delta-G solvation = -19414.103102 eV Core-core repulsion = 16449.391468 eV Total energy + Delta-G solvation = -2964.711634 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.35296 -38.52027 -35.66650 -34.32793 -32.72491 -32.18822 -31.01306 -29.20884 -27.07208 -26.78719 -23.51610 -23.24807 -21.69749 -21.36405 -19.27228 -17.99996 -16.85230 -16.03042 -15.93480 -15.60767 -14.81558 -14.36818 -14.30002 -13.87718 -13.77419 -13.57621 -13.14635 -12.99606 -12.78589 -12.29814 -12.20616 -12.01597 -11.76198 -11.74164 -11.37278 -11.12477 -11.05234 -10.93414 -10.91406 -10.30502 -9.46476 -9.36954 -9.29342 -8.74529 -8.63112 -8.08522 -7.71574 -6.16231 -4.23032 1.43871 1.48774 3.05487 3.23565 3.30848 3.33918 3.71586 3.94670 4.30690 4.73415 4.85252 4.92984 4.97418 5.18166 5.19910 5.23133 5.30608 5.36660 5.47671 5.51419 5.66299 5.71217 5.76228 5.83184 5.91255 6.15127 6.22897 6.47100 6.54112 6.64467 6.81407 6.99579 7.34702 7.47253 7.52275 7.55106 7.80924 7.99599 8.71897 8.86044 9.27268 9.45304 10.94053 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.035017 B = 0.004201 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.417822 B = 6663.298407 C = 6967.321693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.107 3.893 3 N -0.594 5.594 4 C 0.695 3.305 5 O -0.584 6.584 6 N -0.723 5.723 7 C 0.265 3.735 8 C -0.542 4.542 9 H 0.063 0.937 10 C 0.064 3.936 11 N -0.885 5.885 12 Si 0.904 3.096 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.282 1.282 16 C 0.186 3.814 17 C -0.115 4.115 18 C -0.103 4.103 19 C -0.136 4.136 20 C -0.078 4.078 21 C -0.111 4.111 22 C -0.137 4.137 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.388 0.612 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.265 0.735 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.637 -5.691 19.145 20.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.016 4.016 3 N -0.327 5.327 4 C 0.397 3.603 5 O -0.461 6.461 6 N -0.376 5.376 7 C 0.144 3.856 8 C -0.580 4.580 9 H 0.081 0.919 10 C -0.140 4.140 11 N -0.522 5.522 12 Si 0.731 3.269 13 H -0.196 1.196 14 H -0.208 1.208 15 H -0.208 1.208 16 C 0.093 3.907 17 C -0.136 4.136 18 C -0.121 4.121 19 C -0.155 4.155 20 C -0.079 4.079 21 C -0.167 4.167 22 C -0.157 4.157 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.222 0.778 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.212 -4.755 18.845 19.474 hybrid contribution -0.505 -0.924 -0.973 1.434 sum -1.717 -5.679 17.872 18.831 Atomic orbital electron populations 1.22242 0.95659 1.02278 1.03036 1.21567 0.94728 0.82101 1.03216 1.44895 1.70102 1.14279 1.03451 1.16085 0.79704 0.84348 0.80202 1.90907 1.49714 1.19608 1.85870 1.45884 1.64780 1.21300 1.05685 1.19030 0.97132 0.92667 0.76758 1.21239 1.42754 1.03204 0.90817 0.91917 1.24943 0.94917 0.95233 0.98879 1.69990 1.43400 1.18092 1.20715 0.86359 0.78422 0.80266 0.81843 1.19642 1.20792 1.20786 1.17371 0.94673 0.93219 0.85419 1.21204 0.99728 0.95700 0.96937 1.20970 0.98264 0.99399 0.93495 1.20936 0.98841 0.96038 0.99676 1.19673 0.98036 0.95156 0.95020 1.20757 0.97805 1.00797 0.97390 1.20946 0.98593 1.01582 0.94577 0.92339 0.91674 0.91405 0.90051 0.90322 0.77833 0.95611 0.95649 0.92489 0.85987 0.85963 0.86313 0.91365 0.91654 0.91610 0.86098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 10.18 37.16 0.38 -1.61 16 2 C 0.11 1.34 5.70 -4.04 -0.02 1.32 16 3 N -0.59 -10.03 2.58 -118.82 -0.31 -10.33 16 4 C 0.70 15.12 8.05 -86.93 -0.70 14.42 16 5 O -0.58 -15.17 15.72 5.29 0.08 -15.08 16 6 N -0.72 -15.90 5.39 -66.42 -0.36 -16.26 16 7 C 0.27 7.17 5.43 -5.19 -0.03 7.14 16 8 C -0.54 -14.77 9.28 -34.44 -0.32 -15.09 16 9 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 10 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 11 N -0.88 -26.19 13.29 55.43 0.74 -25.45 16 12 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 13 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 C 0.19 3.00 5.17 -83.69 -0.43 2.57 16 17 C -0.12 -1.84 8.95 -39.39 -0.35 -2.20 16 18 C -0.10 -1.35 10.04 -39.61 -0.40 -1.75 16 19 C -0.14 -1.61 9.70 -39.55 -0.38 -1.99 16 20 C -0.08 -0.94 5.88 -104.65 -0.62 -1.55 16 21 C -0.11 -0.96 10.01 36.01 0.36 -0.60 16 22 C -0.14 -1.87 8.96 -39.39 -0.35 -2.23 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.87 8.01 -51.93 -0.42 0.45 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.08 1.01 6.61 -51.93 -0.34 0.66 16 27 H 0.08 0.81 7.32 -51.93 -0.38 0.43 16 28 H 0.39 7.35 6.03 -40.82 -0.25 7.11 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.12 2.09 8.05 -52.49 -0.42 1.67 16 33 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 34 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 37 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 38 H 0.12 1.47 7.80 -52.49 -0.41 1.06 16 LS Contribution 323.35 15.07 4.87 4.87 Total: -1.00 -33.03 323.35 -8.51 -41.54 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -5.55 Total: 4.78 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -2.96 Total: 0.12 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: 0.07 Total: -52.05 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.08 Total: -15.08 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.03 -8.51 -41.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000242842311.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.479 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds