Wall clock time and date at job start Mon Mar 30 2020 06:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46496 * 109.46633 * 2 1 4 4 C 1.34776 * 119.99876 * 269.99666 * 3 2 1 5 5 O 1.21588 * 119.99815 * 185.66661 * 4 3 2 6 6 N 1.34769 * 120.00173 * 5.67225 * 4 3 2 7 7 C 1.46507 * 120.00267 * 179.97438 * 6 4 3 8 8 C 1.50694 * 109.47130 * 179.97438 * 7 6 4 9 9 H 1.08005 * 120.00069 * 0.02562 * 8 7 6 10 10 C 1.37880 * 120.00131 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99792 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00241 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.46928 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47014 * 120.00458 * 12 10 8 15 15 H 1.48501 * 109.46915 * 240.00472 * 12 10 8 16 16 C 1.39945 * 120.00228 * 90.00422 * 3 2 1 17 17 C 1.38891 * 120.06864 * 236.62124 * 16 3 2 18 18 C 1.38088 * 119.93063 * 180.29492 * 17 16 3 19 19 C 1.38306 * 120.06763 * 359.44353 * 18 17 16 20 20 C 1.38255 * 120.13987 * 0.27934 * 19 18 17 21 21 C 1.50704 * 119.96622 * 179.97438 * 20 19 18 22 22 C 1.38136 * 120.07261 * 359.97438 * 20 19 18 23 23 H 1.08999 * 109.47055 * 299.99362 * 1 2 3 24 24 H 1.08995 * 109.46953 * 60.00171 * 1 2 3 25 25 H 1.09003 * 109.46531 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47024 * 240.00181 * 2 1 3 27 27 H 1.08995 * 109.46953 * 119.99829 * 2 1 3 28 28 H 0.97006 * 120.00056 * 359.97438 * 6 4 3 29 29 H 1.08992 * 109.46782 * 300.00009 * 7 6 4 30 30 H 1.08999 * 109.46772 * 59.99799 * 7 6 4 31 31 H 0.96997 * 119.99976 * 179.97438 * 11 10 8 32 32 H 1.07996 * 120.03452 * 0.02562 * 17 16 3 33 33 H 1.07992 * 119.97065 * 179.72328 * 18 17 16 34 34 H 1.08000 * 119.93177 * 180.25661 * 19 18 17 35 35 H 1.08995 * 109.47662 * 89.99765 * 21 20 19 36 36 H 1.09002 * 109.47107 * 210.00344 * 21 20 19 37 37 H 1.09007 * 109.47016 * 329.99884 * 21 20 19 38 38 H 1.07998 * 120.03614 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0165 -1.1672 5 8 2.7446 3.1241 -1.1698 6 7 1.9113 1.4243 -2.3315 7 6 2.1549 2.1151 -3.6003 8 6 1.6990 1.2439 -4.7422 9 1 1.2701 0.2729 -4.5428 10 6 1.8282 1.6869 -6.0415 11 7 2.3500 2.8694 -6.2843 12 14 1.2623 0.6073 -7.4570 13 1 0.7154 -0.6650 -6.9212 14 1 0.2074 1.3137 -8.2273 15 1 2.4140 0.3152 -8.3479 16 6 2.2516 2.0410 1.2119 17 6 1.6120 3.2435 1.4840 18 6 1.8490 3.8951 2.6782 19 6 2.7133 3.3458 3.6077 20 6 3.3470 2.1460 3.3423 21 6 4.2884 1.5512 4.3578 22 6 3.1182 1.4918 2.1474 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.5113 0.5406 -2.3295 29 1 1.6010 3.0536 -3.6151 30 1 3.2204 2.3204 -3.7033 31 1 2.4413 3.1809 -7.1983 32 1 0.9335 3.6706 0.7605 33 1 1.3555 4.8324 2.8884 34 1 2.8938 3.8552 4.5427 35 1 3.7320 0.8993 5.0311 36 1 5.0575 0.9732 3.8454 37 1 4.7568 2.3512 4.9313 38 1 3.6139 0.5549 1.9405 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000242842311.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:30 Heat of formation + Delta-G solvation = -28.643938 kcal Electronic energy + Delta-G solvation = -19414.995623 eV Core-core repulsion = 16449.391468 eV Total energy + Delta-G solvation = -2965.604155 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.77872 -39.81559 -37.07955 -36.28252 -34.43370 -33.48029 -32.11474 -30.55407 -28.93729 -27.72850 -25.15048 -24.54289 -23.16843 -22.49767 -20.94422 -19.49159 -18.15366 -18.02648 -17.17976 -16.90196 -16.62478 -15.87356 -15.70269 -15.18461 -14.94811 -14.68872 -14.48287 -14.24418 -14.05075 -14.01362 -13.60357 -13.09658 -13.03894 -12.89103 -12.75869 -12.75427 -12.35221 -12.26873 -12.11571 -12.03575 -11.47022 -11.24715 -10.83588 -10.57019 -9.93199 -9.64591 -9.09666 -8.30036 -6.47126 0.34213 0.43838 1.42663 1.44744 1.57134 1.64905 2.08925 2.37312 2.78998 3.05074 3.14445 3.91583 3.93891 4.00731 4.21584 4.23429 4.38959 4.42895 4.46729 4.61483 4.79781 4.84338 4.90877 4.93090 4.98884 5.01970 5.21855 5.26907 5.29710 5.37353 5.45423 5.47824 5.61679 5.63612 5.76757 5.80705 6.01637 6.18380 6.63643 7.07461 7.23154 7.59346 8.82701 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.035017 B = 0.004201 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.417822 B = 6663.298407 C = 6967.321693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.098 3.902 3 N -0.583 5.583 4 C 0.693 3.307 5 O -0.635 6.635 6 N -0.716 5.716 7 C 0.285 3.715 8 C -0.554 4.554 9 H 0.084 0.916 10 C 0.005 3.995 11 N -0.931 5.931 12 Si 0.987 3.013 13 H -0.252 1.252 14 H -0.279 1.279 15 H -0.278 1.278 16 C 0.154 3.846 17 C -0.145 4.145 18 C -0.106 4.106 19 C -0.131 4.131 20 C -0.075 4.075 21 C -0.108 4.108 22 C -0.141 4.141 23 H 0.056 0.944 24 H 0.040 0.960 25 H 0.100 0.900 26 H 0.085 0.915 27 H 0.110 0.890 28 H 0.404 0.596 29 H -0.015 1.015 30 H -0.014 1.014 31 H 0.269 0.731 32 H 0.093 0.907 33 H 0.142 0.858 34 H 0.153 0.847 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.818 -8.207 20.994 22.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.023 4.023 3 N -0.315 5.315 4 C 0.394 3.606 5 O -0.516 6.516 6 N -0.371 5.371 7 C 0.162 3.838 8 C -0.592 4.592 9 H 0.102 0.898 10 C -0.195 4.195 11 N -0.569 5.569 12 Si 0.810 3.190 13 H -0.175 1.175 14 H -0.204 1.204 15 H -0.203 1.203 16 C 0.062 3.938 17 C -0.166 4.166 18 C -0.124 4.124 19 C -0.149 4.149 20 C -0.076 4.076 21 C -0.165 4.165 22 C -0.161 4.161 23 H 0.075 0.925 24 H 0.059 0.941 25 H 0.118 0.882 26 H 0.103 0.897 27 H 0.128 0.872 28 H 0.241 0.759 29 H 0.003 0.997 30 H 0.004 0.996 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.160 0.840 34 H 0.171 0.829 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.420 -7.335 20.767 22.070 hybrid contribution -0.419 -0.086 -1.375 1.440 sum -1.840 -7.421 19.392 20.845 Atomic orbital electron populations 1.22187 0.94631 1.03925 1.01746 1.21929 0.95587 0.79825 1.04912 1.44805 1.69025 1.15504 1.02128 1.16264 0.79163 0.83834 0.81305 1.90855 1.51894 1.22009 1.86884 1.45457 1.65292 1.21780 1.04536 1.18457 0.93976 0.91930 0.79439 1.21591 1.42810 1.03882 0.90943 0.89805 1.26079 0.94568 0.96630 1.02208 1.70155 1.44657 1.20411 1.21700 0.85074 0.77864 0.78631 0.77410 1.17501 1.20427 1.20348 1.17681 0.96575 0.94008 0.85556 1.21197 1.00805 0.96598 0.97980 1.21243 0.98542 0.99970 0.92670 1.21362 0.97322 0.95877 1.00331 1.20152 0.97690 0.94856 0.94899 1.20831 0.97317 1.01550 0.96791 1.21153 0.97976 1.02296 0.94675 0.92519 0.94072 0.88182 0.89714 0.87157 0.75872 0.99688 0.99627 0.92185 0.88867 0.84047 0.82892 0.89413 0.91228 0.90084 0.84574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.62 10.18 71.98 0.73 -2.89 16 2 C 0.10 2.36 5.70 86.38 0.49 2.85 16 3 N -0.58 -20.06 2.58 -648.09 -1.67 -21.73 16 4 C 0.69 31.72 8.05 179.06 1.44 33.16 16 5 O -0.64 -35.36 15.72 -3.99 -0.06 -35.42 16 6 N -0.72 -32.87 5.39 -482.31 -2.60 -35.47 16 7 C 0.29 16.34 5.43 85.63 0.46 16.80 16 8 C -0.55 -30.74 9.28 25.60 0.24 -30.50 16 9 H 0.08 4.19 7.60 -2.91 -0.02 4.17 16 10 C 0.00 0.27 5.46 84.65 0.46 0.73 16 11 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16 12 Si 0.99 42.55 29.54 68.60 2.03 44.57 16 13 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 14 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 15 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 16 C 0.15 5.01 5.17 38.15 0.20 5.21 16 17 C -0.15 -4.85 8.95 22.39 0.20 -4.65 16 18 C -0.11 -2.72 10.04 22.25 0.22 -2.50 16 19 C -0.13 -2.74 9.70 22.29 0.22 -2.53 16 20 C -0.08 -1.60 5.88 -19.88 -0.12 -1.71 16 21 C -0.11 -1.44 10.01 71.24 0.71 -0.73 16 22 C -0.14 -3.65 8.96 22.39 0.20 -3.45 16 23 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.04 1.09 8.01 -2.39 -0.02 1.07 16 25 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.08 1.98 6.61 -2.39 -0.02 1.96 16 27 H 0.11 1.98 7.32 -2.39 -0.02 1.97 16 28 H 0.40 15.53 6.03 -92.70 -0.56 14.97 16 29 H -0.01 -0.96 8.14 -2.39 -0.02 -0.98 16 30 H -0.01 -0.92 8.14 -2.39 -0.02 -0.93 16 31 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 32 H 0.09 3.53 8.05 -2.91 -0.02 3.51 16 33 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 34 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 35 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 0.90 8.08 -2.39 -0.02 0.88 16 37 H 0.08 0.87 8.09 -2.38 -0.02 0.85 16 38 H 0.14 3.00 7.80 -2.91 -0.02 2.98 16 Total: -1.00 -76.55 323.35 3.93 -72.62 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 0.49 Total: 22.24 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 5.47 Total: 9.80 kcal Atomic # 7 Polarization: -109.83 SS G_CDS: -3.99 Total: -113.82 kcal Atomic # 8 Polarization: -35.36 SS G_CDS: -0.06 Total: -35.42 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -76.55 3.93 -72.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000242842311.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.974 kcal (2) G-P(sol) polarization free energy of solvation -76.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds