Wall clock time and date at job start Mon Mar 30 2020 06:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46874 * 2 1 4 4 C 1.50696 * 109.47268 * 239.99980 * 2 1 3 5 5 H 1.08004 * 119.99896 * 275.00612 * 4 2 1 6 6 C 1.37880 * 120.00067 * 95.00783 * 4 2 1 7 7 N 1.31509 * 119.99906 * 184.97760 * 6 4 2 8 8 Si 1.86795 * 119.99891 * 4.97255 * 6 4 2 9 9 H 1.48500 * 109.47340 * 84.95904 * 8 6 4 10 10 H 1.48496 * 109.47123 * 204.96022 * 8 6 4 11 11 H 1.48502 * 109.47093 * 324.95767 * 8 6 4 12 12 N 1.46498 * 109.46723 * 119.99743 * 2 1 3 13 13 C 1.46500 * 119.99884 * 60.00758 * 12 2 1 14 14 C 1.34775 * 120.00412 * 239.99962 * 12 2 1 15 15 O 1.21629 * 119.99536 * 5.40275 * 14 12 2 16 16 C 1.47263 * 120.00476 * 185.40177 * 14 12 2 17 17 C 1.46683 * 126.94053 * 34.78202 * 16 14 12 18 18 C 1.34488 * 106.33491 * 179.82860 * 17 16 14 19 19 N 1.36452 * 108.85217 * 0.43710 * 18 17 16 20 20 H 0.96999 * 124.84962 * 179.73082 * 19 18 17 21 21 C 1.34659 * 110.29626 * 359.70872 * 19 18 17 22 22 C 1.50701 * 125.79795 * 180.02562 * 21 19 18 23 23 C 1.53001 * 117.49986 * 8.72499 * 22 21 19 24 24 C 1.52991 * 117.50233 * 300.06209 * 22 21 19 25 25 H 1.08999 * 109.46872 * 174.96304 * 1 2 3 26 26 H 1.09000 * 109.46654 * 54.96703 * 1 2 3 27 27 H 1.08992 * 109.47565 * 294.96482 * 1 2 3 28 28 H 0.96998 * 119.99789 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.47603 * 95.07317 * 13 12 2 30 30 H 1.09004 * 109.46889 * 215.07134 * 13 12 2 31 31 H 1.08999 * 109.47286 * 335.06615 * 13 12 2 32 32 H 1.08002 * 126.83699 * 359.97438 * 17 16 14 33 33 H 1.07999 * 125.57785 * 180.14484 * 18 17 16 34 34 H 1.09007 * 115.54578 * 154.38991 * 22 21 19 35 35 H 1.08995 * 117.49837 * 359.97438 * 23 22 21 36 36 H 1.09001 * 117.49422 * 145.01796 * 23 22 21 37 37 H 1.09004 * 117.50433 * 214.97847 * 24 22 21 38 38 H 1.08999 * 117.50121 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1354 -1.7855 -1.2290 6 6 2.3604 0.0121 -2.3580 7 7 2.7050 -0.6131 -3.4624 8 14 2.3154 1.8791 -2.3168 9 1 3.6028 2.3937 -1.7848 10 1 2.1044 2.3996 -3.6915 11 1 1.2032 2.3282 -1.4414 12 7 2.0182 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7930 -0.0356 2.0834 15 8 3.0062 1.1536 1.9431 16 6 3.3816 -0.7598 3.2227 17 6 3.8571 -2.1473 3.2346 18 6 4.3140 -2.3800 4.4779 19 7 4.1470 -1.2519 5.2272 20 1 4.3948 -1.1651 6.1610 21 6 3.5897 -0.2763 4.4850 22 6 3.2530 1.1123 4.9638 23 6 3.7509 1.5212 6.3516 24 6 2.2637 1.2392 6.1240 25 1 -0.3633 -1.0237 -0.0902 26 1 -0.3633 0.5899 -0.8415 27 1 -0.3634 0.4337 0.9316 28 1 2.9354 -0.1048 -4.2558 29 1 2.4601 -2.7358 1.0512 30 1 1.5354 -2.2635 2.4969 31 1 0.7343 -2.3239 0.9085 32 1 3.8453 -2.8430 2.4085 33 1 4.7387 -3.3093 4.8276 34 1 3.2251 1.8818 4.1922 35 1 4.3216 0.7857 6.9184 36 1 4.0502 2.5598 6.4930 37 1 1.5852 2.0922 6.1160 38 1 1.8566 0.3182 6.5413 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283296665.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:39 Heat of formation + Delta-G solvation = 38.856555 kcal Electronic energy + Delta-G solvation = -20011.825715 eV Core-core repulsion = 17049.148601 eV Total energy + Delta-G solvation = -2962.677114 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.18320 -38.49687 -36.88658 -35.18398 -32.63964 -31.17311 -29.64485 -28.97865 -26.07619 -25.15238 -23.44538 -22.57417 -22.02665 -20.44002 -19.72149 -17.97560 -17.51738 -16.84863 -15.68646 -15.31829 -15.10423 -14.61006 -14.17593 -13.98695 -13.77937 -13.05753 -12.96615 -12.48003 -12.23970 -12.20822 -12.11847 -11.76430 -11.60183 -11.48922 -11.21254 -10.96410 -10.79969 -10.57709 -10.48536 -10.32351 -9.72537 -9.19349 -8.93305 -8.54115 -8.51932 -7.93882 -7.44857 -6.08917 -4.09836 2.06646 2.69889 3.22093 3.38235 3.44892 3.52660 3.76061 4.03540 4.19232 4.46479 4.47328 4.73595 4.89410 5.09464 5.22887 5.29271 5.41472 5.51921 5.68768 5.73937 5.88824 5.96123 5.98008 6.19381 6.22593 6.29505 6.37461 6.51154 6.52750 6.70739 6.96550 7.04907 7.09062 7.24904 7.54942 7.63276 7.78328 8.32683 8.65104 8.94018 9.19193 9.54912 11.03312 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.024995 B = 0.006050 C = 0.005506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.941834 B = 4626.967806 C = 5083.725968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.223 3.777 3 H 0.064 0.936 4 C -0.521 4.521 5 H 0.077 0.923 6 C 0.078 3.922 7 N -0.894 5.894 8 Si 0.874 3.126 9 H -0.271 1.271 10 H -0.289 1.289 11 H -0.263 1.263 12 N -0.583 5.583 13 C 0.093 3.907 14 C 0.580 3.420 15 O -0.566 6.566 16 C -0.202 4.202 17 C -0.161 4.161 18 C -0.024 4.024 19 N -0.556 5.556 20 H 0.409 0.591 21 C 0.111 3.889 22 C -0.086 4.086 23 C -0.182 4.182 24 C -0.170 4.170 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.026 0.974 28 H 0.265 0.735 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.149 0.851 33 H 0.167 0.833 34 H 0.142 0.858 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.407 -2.060 19.800 19.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.122 3.878 3 H 0.081 0.919 4 C -0.559 4.559 5 H 0.096 0.904 6 C -0.125 4.125 7 N -0.531 5.531 8 Si 0.701 3.299 9 H -0.197 1.197 10 H -0.215 1.215 11 H -0.188 1.188 12 N -0.313 5.313 13 C -0.051 4.051 14 C 0.369 3.631 15 O -0.447 6.447 16 C -0.212 4.212 17 C -0.186 4.186 18 C -0.151 4.151 19 N -0.152 5.152 20 H 0.245 0.755 21 C -0.005 4.005 22 C -0.105 4.105 23 C -0.219 4.219 24 C -0.208 4.208 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.167 0.833 33 H 0.184 0.816 34 H 0.160 0.840 35 H 0.105 0.895 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.587 -1.458 19.600 19.663 hybrid contribution 0.269 0.662 0.218 0.747 sum 0.856 -0.796 19.818 19.852 Atomic orbital electron populations 1.22212 0.98518 1.00737 0.99055 1.19296 0.90735 0.94923 0.82800 0.91854 1.21155 1.44300 0.95728 0.94760 0.90449 1.24952 0.93876 0.98424 0.95239 1.69892 1.45620 1.35966 1.01662 0.86903 0.79936 0.86265 0.76814 1.19679 1.21493 1.18763 1.48082 1.48827 1.11760 1.22658 1.21626 1.00661 0.83060 0.99740 1.17401 0.78367 0.86000 0.81354 1.90664 1.62421 1.15438 1.76179 1.20344 1.11655 0.95367 0.93807 1.22239 1.04316 0.95139 0.96872 1.21650 1.09530 0.91404 0.92564 1.41403 1.50451 1.10909 1.12468 0.75522 1.19145 1.00820 0.89568 0.90960 1.20812 1.03908 0.93337 0.92468 1.22980 0.97243 1.02711 0.98952 1.23044 0.92403 1.03507 1.01811 0.93195 0.92726 0.95459 0.92508 0.93261 0.92574 0.91436 0.83321 0.81615 0.84027 0.89504 0.87934 0.87972 0.88913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 9.06 37.16 0.34 -2.88 16 2 C 0.22 5.62 2.29 -69.09 -0.16 5.46 16 3 H 0.06 1.74 4.06 -51.93 -0.21 1.53 16 4 C -0.52 -14.76 8.82 -34.44 -0.30 -15.06 16 5 H 0.08 2.31 7.67 -52.48 -0.40 1.91 16 6 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 7 N -0.89 -27.39 13.96 55.43 0.77 -26.62 16 8 Si 0.87 22.79 26.99 -169.99 -4.59 18.20 16 9 H -0.27 -7.26 7.11 56.52 0.40 -6.86 16 10 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.26 -6.63 6.81 56.52 0.38 -6.24 16 12 N -0.58 -13.04 2.75 -176.59 -0.49 -13.53 16 13 C 0.09 1.68 8.13 59.85 0.49 2.16 16 14 C 0.58 13.03 7.47 -12.59 -0.09 12.93 16 15 O -0.57 -14.40 14.94 5.25 0.08 -14.33 16 16 C -0.20 -3.65 5.36 -103.35 -0.55 -4.20 16 17 C -0.16 -2.41 9.05 -37.50 -0.34 -2.75 16 18 C -0.02 -0.28 11.89 -16.82 -0.20 -0.48 16 19 N -0.56 -6.23 5.80 -9.11 -0.05 -6.28 16 20 H 0.41 3.16 7.84 -40.82 -0.32 2.84 16 21 C 0.11 1.66 6.69 -81.88 -0.55 1.11 16 22 C -0.09 -1.18 5.90 -91.77 -0.54 -1.72 16 23 C -0.18 -1.75 10.13 -26.69 -0.27 -2.02 16 24 C -0.17 -1.79 10.24 -26.70 -0.27 -2.06 16 25 H 0.05 1.02 6.87 -51.93 -0.36 0.66 16 26 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 29 H 0.05 0.87 6.93 -51.93 -0.36 0.51 16 30 H 0.06 0.87 6.55 -51.93 -0.34 0.53 16 31 H 0.07 1.19 6.54 -51.93 -0.34 0.85 16 32 H 0.15 2.15 6.48 -52.49 -0.34 1.81 16 33 H 0.17 1.28 8.06 -52.49 -0.42 0.85 16 34 H 0.14 2.34 6.85 -51.93 -0.36 1.98 16 35 H 0.09 0.68 7.08 -51.93 -0.37 0.31 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 309.89 15.07 4.67 4.67 Total: -1.00 -34.44 309.89 -7.24 -41.68 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.08 Total: 3.52 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -2.56 Total: -7.31 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: 0.23 Total: -46.43 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: 0.08 Total: -14.33 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.59 Total: 18.20 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.44 -7.24 -41.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283296665.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.536 kcal (2) G-P(sol) polarization free energy of solvation -34.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds