Wall clock time and date at job start Mon Mar 30 2020 06:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46874 * 2 1 4 4 C 1.50696 * 109.47268 * 239.99980 * 2 1 3 5 5 H 1.08004 * 119.99896 * 275.00612 * 4 2 1 6 6 C 1.37880 * 120.00067 * 95.00783 * 4 2 1 7 7 N 1.31509 * 119.99906 * 184.97760 * 6 4 2 8 8 Si 1.86795 * 119.99891 * 4.97255 * 6 4 2 9 9 H 1.48500 * 109.47340 * 84.95904 * 8 6 4 10 10 H 1.48496 * 109.47123 * 204.96022 * 8 6 4 11 11 H 1.48502 * 109.47093 * 324.95767 * 8 6 4 12 12 N 1.46498 * 109.46723 * 119.99743 * 2 1 3 13 13 C 1.46500 * 119.99884 * 60.00758 * 12 2 1 14 14 C 1.34775 * 120.00412 * 239.99962 * 12 2 1 15 15 O 1.21629 * 119.99536 * 5.40275 * 14 12 2 16 16 C 1.47263 * 120.00476 * 185.40177 * 14 12 2 17 17 C 1.46683 * 126.94053 * 34.78202 * 16 14 12 18 18 C 1.34488 * 106.33491 * 179.82860 * 17 16 14 19 19 N 1.36452 * 108.85217 * 0.43710 * 18 17 16 20 20 H 0.96999 * 124.84962 * 179.73082 * 19 18 17 21 21 C 1.34659 * 110.29626 * 359.70872 * 19 18 17 22 22 C 1.50701 * 125.79795 * 180.02562 * 21 19 18 23 23 C 1.53001 * 117.49986 * 8.72499 * 22 21 19 24 24 C 1.52991 * 117.50233 * 300.06209 * 22 21 19 25 25 H 1.08999 * 109.46872 * 174.96304 * 1 2 3 26 26 H 1.09000 * 109.46654 * 54.96703 * 1 2 3 27 27 H 1.08992 * 109.47565 * 294.96482 * 1 2 3 28 28 H 0.96998 * 119.99789 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.47603 * 95.07317 * 13 12 2 30 30 H 1.09004 * 109.46889 * 215.07134 * 13 12 2 31 31 H 1.08999 * 109.47286 * 335.06615 * 13 12 2 32 32 H 1.08002 * 126.83699 * 359.97438 * 17 16 14 33 33 H 1.07999 * 125.57785 * 180.14484 * 18 17 16 34 34 H 1.09007 * 115.54578 * 154.38991 * 22 21 19 35 35 H 1.08995 * 117.49837 * 359.97438 * 23 22 21 36 36 H 1.09001 * 117.49422 * 145.01796 * 23 22 21 37 37 H 1.09004 * 117.50433 * 214.97847 * 24 22 21 38 38 H 1.08999 * 117.50121 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1354 -1.7855 -1.2290 6 6 2.3604 0.0121 -2.3580 7 7 2.7050 -0.6131 -3.4624 8 14 2.3154 1.8791 -2.3168 9 1 3.6028 2.3937 -1.7848 10 1 2.1044 2.3996 -3.6915 11 1 1.2032 2.3282 -1.4414 12 7 2.0182 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7930 -0.0356 2.0834 15 8 3.0062 1.1536 1.9431 16 6 3.3816 -0.7598 3.2227 17 6 3.8571 -2.1473 3.2346 18 6 4.3140 -2.3800 4.4779 19 7 4.1470 -1.2519 5.2272 20 1 4.3948 -1.1651 6.1610 21 6 3.5897 -0.2763 4.4850 22 6 3.2530 1.1123 4.9638 23 6 3.7509 1.5212 6.3516 24 6 2.2637 1.2392 6.1240 25 1 -0.3633 -1.0237 -0.0902 26 1 -0.3633 0.5899 -0.8415 27 1 -0.3634 0.4337 0.9316 28 1 2.9354 -0.1048 -4.2558 29 1 2.4601 -2.7358 1.0512 30 1 1.5354 -2.2635 2.4969 31 1 0.7343 -2.3239 0.9085 32 1 3.8453 -2.8430 2.4085 33 1 4.7387 -3.3093 4.8276 34 1 3.2251 1.8818 4.1922 35 1 4.3216 0.7857 6.9184 36 1 4.0502 2.5598 6.4930 37 1 1.5852 2.0922 6.1160 38 1 1.8566 0.3182 6.5413 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283296665.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:39 Heat of formation + Delta-G solvation = 15.756884 kcal Electronic energy + Delta-G solvation = -20012.827392 eV Core-core repulsion = 17049.148601 eV Total energy + Delta-G solvation = -2963.678791 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.27673 -40.17962 -37.79003 -37.01913 -34.70645 -32.78656 -31.13943 -30.04033 -27.67056 -27.22777 -24.83428 -23.35183 -23.21244 -21.68928 -21.23381 -19.44256 -19.05876 -18.54400 -17.40943 -16.74761 -16.30556 -16.13024 -15.82318 -15.16316 -14.96088 -14.76117 -14.43531 -14.24663 -14.12714 -13.68467 -13.24446 -13.16325 -13.04317 -12.95195 -12.74616 -12.49745 -12.45659 -12.26672 -11.82748 -11.68607 -11.38653 -11.26460 -10.78955 -10.66908 -9.68296 -9.28815 -8.94692 -8.36866 -6.39684 0.85385 1.25849 1.32094 1.41400 1.61117 2.20171 2.27925 2.44873 2.56321 2.97361 3.07792 3.55156 3.84123 4.03928 4.07458 4.30641 4.34528 4.48604 4.52771 4.61776 4.67564 4.70678 4.77142 4.84600 4.90846 4.97984 5.01076 5.11757 5.14794 5.17476 5.27447 5.39843 5.55245 5.82409 5.90078 6.03781 6.22541 6.64385 6.71096 6.87485 7.25378 7.51085 8.78810 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.024995 B = 0.006050 C = 0.005506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.941834 B = 4626.967806 C = 5083.725968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.222 3.778 3 H 0.037 0.963 4 C -0.517 4.517 5 H 0.053 0.947 6 C 0.030 3.970 7 N -0.934 5.934 8 Si 0.924 3.076 9 H -0.287 1.287 10 H -0.273 1.273 11 H -0.252 1.252 12 N -0.594 5.594 13 C 0.097 3.903 14 C 0.570 3.430 15 O -0.611 6.611 16 C -0.253 4.253 17 C -0.191 4.191 18 C 0.010 3.990 19 N -0.535 5.535 20 H 0.431 0.569 21 C 0.123 3.877 22 C -0.129 4.129 23 C -0.152 4.152 24 C -0.158 4.158 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.044 0.956 28 H 0.268 0.732 29 H 0.047 0.953 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.145 0.855 33 H 0.215 0.785 34 H 0.101 0.899 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.473 -2.826 23.343 23.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.119 3.881 3 H 0.055 0.945 4 C -0.556 4.556 5 H 0.071 0.929 6 C -0.170 4.170 7 N -0.573 5.573 8 Si 0.750 3.250 9 H -0.213 1.213 10 H -0.198 1.198 11 H -0.176 1.176 12 N -0.323 5.323 13 C -0.045 4.045 14 C 0.362 3.638 15 O -0.496 6.496 16 C -0.263 4.263 17 C -0.215 4.215 18 C -0.118 4.118 19 N -0.132 5.132 20 H 0.271 0.729 21 C 0.005 3.995 22 C -0.148 4.148 23 C -0.189 4.189 24 C -0.195 4.195 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.163 0.837 33 H 0.232 0.768 34 H 0.119 0.881 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.123 0.877 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.642 -2.258 23.184 23.302 hybrid contribution 0.302 0.842 -0.763 1.176 sum 0.944 -1.415 22.420 22.485 Atomic orbital electron populations 1.22064 0.95896 1.01798 0.99873 1.19120 0.92675 0.93404 0.82877 0.94456 1.21358 1.43460 0.94751 0.96010 0.92917 1.25594 0.94135 1.02100 0.95127 1.69983 1.47504 1.37441 1.02385 0.86095 0.79410 0.81978 0.77526 1.21337 1.19819 1.17575 1.48059 1.49091 1.13282 1.21841 1.21750 1.00526 0.80676 1.01592 1.18135 0.77659 0.85770 0.82283 1.90615 1.63944 1.17569 1.77473 1.20156 1.15082 0.97262 0.93782 1.22280 1.06555 0.93879 0.98738 1.22253 1.06284 0.92352 0.90887 1.41369 1.48684 1.09866 1.13297 0.72900 1.19162 0.99512 0.90379 0.90434 1.20651 1.08555 0.92139 0.93493 1.23142 0.96746 1.04014 0.95007 1.23133 0.93086 1.04270 0.98990 0.91814 0.93030 0.93666 0.92244 0.93407 0.89786 0.91201 0.83722 0.76827 0.88078 0.86709 0.87039 0.87680 0.87522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.01 9.06 71.98 0.65 -5.36 16 2 C 0.22 11.40 2.29 44.24 0.10 11.50 16 3 H 0.04 2.12 4.06 -2.39 -0.01 2.11 16 4 C -0.52 -30.17 8.82 25.60 0.23 -29.95 16 5 H 0.05 3.27 7.67 -2.91 -0.02 3.25 16 6 C 0.03 1.80 5.47 84.66 0.46 2.26 16 7 N -0.93 -58.74 13.96 21.45 0.30 -58.44 16 8 Si 0.92 48.28 26.99 68.60 1.85 50.13 16 9 H -0.29 -15.59 7.11 99.48 0.71 -14.88 16 10 H -0.27 -13.40 7.11 99.48 0.71 -12.70 16 11 H -0.25 -12.56 6.81 99.48 0.68 -11.88 16 12 N -0.59 -27.13 2.75 -830.87 -2.29 -29.42 16 13 C 0.10 3.50 8.13 127.77 1.04 4.54 16 14 C 0.57 26.47 7.47 86.62 0.65 27.12 16 15 O -0.61 -32.81 14.94 -4.12 -0.06 -32.88 16 16 C -0.25 -9.10 5.36 -19.04 -0.10 -9.20 16 17 C -0.19 -5.39 9.05 23.62 0.21 -5.18 16 18 C 0.01 0.19 11.89 83.12 0.99 1.17 16 19 N -0.53 -9.81 5.80 -182.72 -1.06 -10.87 16 20 H 0.43 4.30 7.84 -92.71 -0.73 3.58 16 21 C 0.12 3.49 6.69 41.78 0.28 3.77 16 22 C -0.13 -3.42 5.90 -11.54 -0.07 -3.49 16 23 C -0.15 -2.44 10.13 30.62 0.31 -2.13 16 24 C -0.16 -2.92 10.24 30.62 0.31 -2.60 16 25 H 0.06 2.56 6.87 -2.39 -0.02 2.55 16 26 H 0.05 2.24 8.14 -2.39 -0.02 2.23 16 27 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 29 H 0.05 1.71 6.93 -2.39 -0.02 1.70 16 30 H 0.08 2.54 6.55 -2.38 -0.02 2.52 16 31 H 0.07 2.43 6.54 -2.39 -0.02 2.42 16 32 H 0.15 4.08 6.48 -2.91 -0.02 4.06 16 33 H 0.22 1.93 8.06 -2.91 -0.02 1.91 16 34 H 0.10 3.54 6.85 -2.38 -0.02 3.52 16 35 H 0.11 1.19 7.08 -2.39 -0.02 1.18 16 36 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 38 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -79.67 309.89 4.13 -75.53 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.33 Total: 13.50 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: 5.06 Total: -7.56 kcal Atomic # 7 Polarization: -95.68 SS G_CDS: -3.05 Total: -98.73 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -0.06 Total: -32.88 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 1.85 Total: 50.13 kcal Total: -79.67 4.13 -75.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283296665.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.291 kcal (2) G-P(sol) polarization free energy of solvation -79.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds