Wall clock time and date at job start Mon Mar 30 2020 06:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99540 * 2 1 4 4 H 1.48502 * 109.46828 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47433 * 299.99558 * 3 2 1 6 6 H 1.48502 * 109.47473 * 59.99976 * 3 2 1 7 7 C 1.37869 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00426 * 180.02562 * 7 2 1 9 9 C 1.50709 * 120.00242 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47079 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46929 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.47237 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99969 * 179.72043 * 12 11 10 14 14 O 1.21631 * 120.00167 * 0.02562 * 13 12 11 15 15 C 1.47266 * 119.99956 * 180.02562 * 13 12 11 16 16 C 1.46684 * 126.93998 * 0.02595 * 15 13 12 17 17 C 1.34493 * 106.33317 * 179.97438 * 16 15 13 18 18 N 1.36445 * 108.85357 * 0.02562 * 17 16 15 19 19 H 0.96996 * 124.85177 * 179.97438 * 18 17 16 20 20 C 1.34659 * 110.30153 * 359.74375 * 18 17 16 21 21 C 1.50696 * 125.80848 * 180.29938 * 20 18 17 22 22 C 1.53005 * 117.49377 * 8.87662 * 21 20 18 23 23 C 1.53007 * 117.49588 * 300.22556 * 21 20 18 24 24 H 0.96994 * 120.00439 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46736 * 59.99748 * 9 7 2 26 26 H 1.08994 * 109.47114 * 299.99983 * 9 7 2 27 27 H 1.09000 * 109.47441 * 60.00304 * 10 9 7 28 28 H 1.09002 * 109.47087 * 299.99750 * 10 9 7 29 29 H 1.09001 * 109.47671 * 60.00109 * 11 10 9 30 30 H 1.08998 * 109.47454 * 300.00107 * 11 10 9 31 31 H 0.97005 * 119.99811 * 0.02562 * 12 11 10 32 32 H 1.08002 * 126.83632 * 359.97438 * 16 15 13 33 33 H 1.07999 * 125.57055 * 179.97438 * 17 16 15 34 34 H 1.08999 * 115.55272 * 154.54964 * 21 20 18 35 35 H 1.08997 * 117.49967 * 0.02562 * 22 21 20 36 36 H 1.09006 * 117.49340 * 145.02593 * 22 21 20 37 37 H 1.08999 * 117.49339 * 214.97846 * 23 21 20 38 38 H 1.08999 * 117.49770 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9870 -0.0001 12 7 2.4325 -6.1006 -0.0007 13 6 1.9832 -7.3712 0.0043 14 8 0.7874 -7.5935 0.0089 15 6 2.9402 -8.4906 0.0043 16 6 4.4042 -8.3987 -0.0003 17 6 4.8625 -9.6632 0.0021 18 7 3.7988 -10.5177 0.0072 19 1 3.8652 -11.4854 0.0093 20 6 2.6436 -9.8257 0.0138 21 6 1.2593 -10.4210 0.0272 22 6 1.1419 -11.9312 0.2433 23 6 0.8709 -11.3322 -1.1390 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5568 0.8902 27 1 2.8720 -3.6043 0.8905 28 1 2.8720 -3.6043 -0.8895 29 1 0.8540 -5.0446 -0.8903 30 1 0.8534 -5.0451 0.8896 31 1 3.3862 -5.9233 -0.0003 32 1 4.9963 -7.4955 -0.0048 33 1 5.9024 -9.9545 -0.0006 34 1 0.4800 -9.7894 0.4536 35 1 2.0658 -12.4939 0.3762 36 1 0.2850 -12.2931 0.8116 37 1 -0.1641 -11.3002 -1.4795 38 1 1.6165 -11.5007 -1.9160 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283941506.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:35 Heat of formation + Delta-G solvation = 12.381006 kcal Electronic energy + Delta-G solvation = -18566.913778 eV Core-core repulsion = 15603.088598 eV Total energy + Delta-G solvation = -2963.825180 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.48594 -38.76806 -37.07470 -35.20303 -33.21044 -31.58844 -30.60884 -29.30290 -26.74591 -23.93747 -22.72707 -22.68842 -21.76252 -20.62970 -20.42396 -19.05477 -17.95345 -16.39775 -15.83491 -15.65227 -15.22785 -15.12559 -14.53179 -14.41506 -14.33603 -13.41057 -13.37686 -13.32925 -12.51110 -12.22953 -12.08052 -11.89982 -11.71590 -11.60187 -10.98122 -10.87846 -10.68688 -10.63850 -10.52132 -9.78730 -9.72642 -9.28280 -9.04453 -9.00694 -8.58613 -8.33058 -8.20494 -5.97563 -4.00268 1.66794 2.30209 2.90563 3.32976 3.40279 3.44033 3.54273 3.76989 3.85204 4.26474 4.48252 4.56111 4.72473 4.81445 4.95800 5.17341 5.26317 5.38223 5.38438 5.54777 5.66807 5.74703 5.80866 5.89808 5.95315 6.08746 6.27682 6.60001 6.66814 6.70595 6.78166 6.98598 7.10660 7.23001 7.69650 7.82996 7.98571 8.02138 8.43316 8.67706 9.06832 9.63698 11.13845 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.040332 B = 0.003104 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.064578 B = 9019.753684 C = 9619.112365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.119 3.881 12 N -0.722 5.722 13 C 0.584 3.416 14 O -0.555 6.555 15 C -0.220 4.220 16 C -0.167 4.167 17 C -0.018 4.018 18 N -0.554 5.554 19 H 0.412 0.588 20 C 0.131 3.869 21 C -0.087 4.087 22 C -0.185 4.185 23 C -0.165 4.165 24 H 0.260 0.740 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.397 0.603 32 H 0.147 0.853 33 H 0.169 0.831 34 H 0.145 0.855 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.667 -24.766 -0.262 26.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.004 4.004 12 N -0.371 5.371 13 C 0.372 3.628 14 O -0.435 6.435 15 C -0.230 4.230 16 C -0.191 4.191 17 C -0.145 4.145 18 N -0.150 5.150 19 H 0.249 0.751 20 C 0.013 3.987 21 C -0.106 4.106 22 C -0.222 4.222 23 C -0.203 4.203 24 H 0.070 0.930 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.231 0.769 32 H 0.165 0.835 33 H 0.187 0.813 34 H 0.163 0.837 35 H 0.105 0.895 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.706 -24.887 -0.263 26.054 hybrid contribution 1.116 0.669 -0.007 1.301 sum 8.822 -24.218 -0.270 25.776 Atomic orbital electron populations 1.69979 1.06044 1.26509 1.50815 1.25032 0.94853 0.99284 0.95366 0.86533 0.80064 0.83814 0.77557 1.19761 1.21034 1.21037 1.21261 0.93040 0.90973 1.50575 0.92599 1.19036 0.93887 0.90880 0.97645 1.21880 0.99737 0.93429 1.00824 1.21600 0.91880 0.85077 1.01857 1.45970 1.10631 1.05619 1.74917 1.17348 0.87252 0.82257 0.75941 1.90715 1.16290 1.84897 1.51579 1.20216 0.93321 0.91943 1.17546 1.22089 0.92666 0.96893 1.07446 1.21692 0.92230 0.89670 1.10910 1.41493 1.05314 1.09140 1.59023 0.75131 1.19295 0.86428 0.90507 1.02422 1.20867 0.93173 0.92299 1.04281 1.23032 1.03347 0.95236 1.00576 1.23028 1.03233 1.02663 0.91334 0.93028 0.96274 0.96266 0.92774 0.92777 0.91884 0.91883 0.76910 0.83513 0.81332 0.83697 0.89519 0.87770 0.87728 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.18 13.29 55.43 0.74 -26.45 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.46 5.27 -26.73 -0.14 -2.60 16 11 C 0.12 2.23 5.67 -4.04 -0.02 2.20 16 12 N -0.72 -11.61 5.55 -61.43 -0.34 -11.95 16 13 C 0.58 9.89 7.81 -12.59 -0.10 9.79 16 14 O -0.55 -11.00 14.89 5.25 0.08 -10.92 16 15 C -0.22 -3.04 6.29 -103.35 -0.65 -3.70 16 16 C -0.17 -1.79 10.56 -37.50 -0.40 -2.19 16 17 C -0.02 -0.15 11.89 -16.82 -0.20 -0.35 16 18 N -0.55 -4.63 5.80 -9.11 -0.05 -4.68 16 19 H 0.41 2.15 7.84 -40.82 -0.32 1.83 16 20 C 0.13 1.54 6.69 -81.88 -0.55 0.99 16 21 C -0.09 -0.97 5.61 -91.77 -0.51 -1.48 16 22 C -0.18 -1.39 10.13 -26.69 -0.27 -1.66 16 23 C -0.17 -1.45 10.24 -26.69 -0.27 -1.72 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.40 5.35 7.60 -40.82 -0.31 5.04 16 32 H 0.15 1.32 7.70 -52.49 -0.40 0.91 16 33 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.15 1.96 6.64 -51.93 -0.34 1.62 16 35 H 0.09 0.49 7.09 -51.93 -0.37 0.12 16 36 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 324.33 15.07 4.89 4.89 Total: -1.00 -33.99 324.33 -8.89 -42.88 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.52 Total: 3.33 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -3.66 Total: -13.82 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.34 Total: -43.08 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.08 Total: -10.92 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.99 -8.89 -42.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283941506.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.262 kcal (2) G-P(sol) polarization free energy of solvation -33.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds