Wall clock time and date at job start Mon Mar 30 2020 06:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99540 * 2 1 4 4 H 1.48502 * 109.46828 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47433 * 299.99558 * 3 2 1 6 6 H 1.48502 * 109.47473 * 59.99976 * 3 2 1 7 7 C 1.37869 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00426 * 180.02562 * 7 2 1 9 9 C 1.50709 * 120.00242 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47079 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46929 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.47237 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99969 * 179.72043 * 12 11 10 14 14 O 1.21631 * 120.00167 * 0.02562 * 13 12 11 15 15 C 1.47266 * 119.99956 * 180.02562 * 13 12 11 16 16 C 1.46684 * 126.93998 * 0.02595 * 15 13 12 17 17 C 1.34493 * 106.33317 * 179.97438 * 16 15 13 18 18 N 1.36445 * 108.85357 * 0.02562 * 17 16 15 19 19 H 0.96996 * 124.85177 * 179.97438 * 18 17 16 20 20 C 1.34659 * 110.30153 * 359.74375 * 18 17 16 21 21 C 1.50696 * 125.80848 * 180.29938 * 20 18 17 22 22 C 1.53005 * 117.49377 * 8.87662 * 21 20 18 23 23 C 1.53007 * 117.49588 * 300.22556 * 21 20 18 24 24 H 0.96994 * 120.00439 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46736 * 59.99748 * 9 7 2 26 26 H 1.08994 * 109.47114 * 299.99983 * 9 7 2 27 27 H 1.09000 * 109.47441 * 60.00304 * 10 9 7 28 28 H 1.09002 * 109.47087 * 299.99750 * 10 9 7 29 29 H 1.09001 * 109.47671 * 60.00109 * 11 10 9 30 30 H 1.08998 * 109.47454 * 300.00107 * 11 10 9 31 31 H 0.97005 * 119.99811 * 0.02562 * 12 11 10 32 32 H 1.08002 * 126.83632 * 359.97438 * 16 15 13 33 33 H 1.07999 * 125.57055 * 179.97438 * 17 16 15 34 34 H 1.08999 * 115.55272 * 154.54964 * 21 20 18 35 35 H 1.08997 * 117.49967 * 0.02562 * 22 21 20 36 36 H 1.09006 * 117.49340 * 145.02593 * 22 21 20 37 37 H 1.08999 * 117.49339 * 214.97846 * 23 21 20 38 38 H 1.08999 * 117.49770 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9870 -0.0001 12 7 2.4325 -6.1006 -0.0007 13 6 1.9832 -7.3712 0.0043 14 8 0.7874 -7.5935 0.0089 15 6 2.9402 -8.4906 0.0043 16 6 4.4042 -8.3987 -0.0003 17 6 4.8625 -9.6632 0.0021 18 7 3.7988 -10.5177 0.0072 19 1 3.8652 -11.4854 0.0093 20 6 2.6436 -9.8257 0.0138 21 6 1.2593 -10.4210 0.0272 22 6 1.1419 -11.9312 0.2433 23 6 0.8709 -11.3322 -1.1390 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5568 0.8902 27 1 2.8720 -3.6043 0.8905 28 1 2.8720 -3.6043 -0.8895 29 1 0.8540 -5.0446 -0.8903 30 1 0.8534 -5.0451 0.8896 31 1 3.3862 -5.9233 -0.0003 32 1 4.9963 -7.4955 -0.0048 33 1 5.9024 -9.9545 -0.0006 34 1 0.4800 -9.7894 0.4536 35 1 2.0658 -12.4939 0.3762 36 1 0.2850 -12.2931 0.8116 37 1 -0.1641 -11.3002 -1.4795 38 1 1.6165 -11.5007 -1.9160 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283941506.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:34 Heat of formation + Delta-G solvation = -10.021891 kcal Electronic energy + Delta-G solvation = -18567.885240 eV Core-core repulsion = 15603.088598 eV Total energy + Delta-G solvation = -2964.796642 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.29216 -40.09629 -37.78986 -36.86693 -35.13869 -33.15959 -31.82026 -30.08029 -28.59367 -25.52516 -23.86610 -23.36109 -22.85914 -22.30665 -21.28950 -20.31459 -18.72510 -18.51669 -16.97929 -16.78713 -16.65167 -16.43217 -16.20465 -15.54696 -15.15378 -14.75974 -14.66698 -14.21177 -14.06455 -13.75907 -13.46267 -13.29439 -12.85874 -12.76266 -12.53809 -12.50221 -12.32248 -11.69628 -11.66523 -11.57330 -11.39990 -11.20461 -10.78300 -10.55468 -10.11878 -9.71517 -9.03104 -8.18691 -6.30365 0.69222 1.42272 1.42762 1.55105 1.56208 2.11602 2.41957 2.52348 2.58017 2.97627 3.14884 3.54216 3.84372 4.03352 4.05450 4.18855 4.22709 4.26706 4.36296 4.56065 4.58709 4.66458 4.89586 4.95378 4.95487 5.00587 5.10973 5.13589 5.17535 5.28139 5.49403 5.57203 5.71272 5.78513 5.84768 5.97923 6.23236 6.61154 6.75549 6.87313 7.38696 7.39877 8.93849 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.040332 B = 0.003104 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.064578 B = 9019.753684 C = 9619.112365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.258 1.258 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.101 4.101 11 C 0.133 3.867 12 N -0.713 5.713 13 C 0.577 3.423 14 O -0.596 6.596 15 C -0.263 4.263 16 C -0.187 4.187 17 C 0.005 3.995 18 N -0.537 5.537 19 H 0.430 0.570 20 C 0.132 3.868 21 C -0.122 4.122 22 C -0.155 4.155 23 C -0.163 4.163 24 H 0.263 0.737 25 H -0.008 1.008 26 H -0.008 1.008 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.412 0.588 32 H 0.160 0.840 33 H 0.213 0.787 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.901 -26.384 -0.316 28.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.794 3.206 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.014 4.014 10 C -0.138 4.138 11 C 0.008 3.992 12 N -0.364 5.364 13 C 0.368 3.632 14 O -0.479 6.479 15 C -0.273 4.273 16 C -0.211 4.211 17 C -0.123 4.123 18 N -0.134 5.134 19 H 0.270 0.730 20 C 0.012 3.988 21 C -0.141 4.141 22 C -0.192 4.192 23 C -0.201 4.201 24 H 0.072 0.928 25 H 0.010 0.990 26 H 0.010 0.990 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.248 0.752 32 H 0.178 0.822 33 H 0.230 0.770 34 H 0.127 0.873 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.120 0.880 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 10.993 -26.542 -0.317 28.730 hybrid contribution 0.073 1.082 0.013 1.084 sum 11.066 -25.460 -0.304 27.762 Atomic orbital electron populations 1.70125 1.07981 1.27749 1.51781 1.26049 0.95774 1.03633 0.94762 0.85334 0.79189 0.78478 0.77640 1.18152 1.20518 1.20531 1.21710 0.93764 0.91967 1.50346 0.91511 1.18945 0.94420 0.92981 0.95037 1.21590 0.98439 0.91767 1.02042 1.21198 0.91960 0.85596 1.00402 1.45750 1.10865 1.04836 1.74952 1.17944 0.87434 0.82998 0.74865 1.90687 1.18257 1.85477 1.53508 1.20143 0.94461 0.91684 1.21010 1.22324 0.91060 0.98849 1.08829 1.22337 0.93711 0.88582 1.07633 1.41484 1.04229 1.10140 1.57506 0.72963 1.19313 0.87560 0.90322 1.01572 1.20708 0.92415 0.94053 1.06948 1.23169 1.04811 0.92245 0.98990 1.23099 1.03433 1.01664 0.91885 0.92801 0.98983 0.98977 0.91422 0.91425 0.93474 0.93471 0.75188 0.82235 0.76992 0.87311 0.86785 0.86961 0.87961 0.87936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.25 13.29 21.45 0.28 -57.97 16 2 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 3 Si 0.97 44.55 29.54 68.60 2.03 46.57 16 4 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 7 C -0.54 -30.91 9.11 25.60 0.23 -30.67 16 8 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 9 C 0.02 1.29 4.97 29.85 0.15 1.44 16 10 C -0.10 -4.14 5.27 30.59 0.16 -3.98 16 11 C 0.13 5.20 5.67 86.38 0.49 5.69 16 12 N -0.71 -23.49 5.55 -466.51 -2.59 -26.08 16 13 C 0.58 20.39 7.81 86.62 0.68 21.06 16 14 O -0.60 -25.36 14.89 -4.13 -0.06 -25.42 16 15 C -0.26 -7.23 6.29 -19.04 -0.12 -7.35 16 16 C -0.19 -3.64 10.56 23.62 0.25 -3.39 16 17 C 0.00 0.06 11.89 83.12 0.99 1.05 16 18 N -0.54 -7.23 5.80 -182.72 -1.06 -8.29 16 19 H 0.43 2.65 7.84 -92.71 -0.73 1.92 16 20 C 0.13 2.97 6.69 41.78 0.28 3.25 16 21 C -0.12 -2.71 5.61 -11.54 -0.06 -2.78 16 22 C -0.16 -2.01 10.13 30.62 0.31 -1.70 16 23 C -0.16 -2.71 10.24 30.62 0.31 -2.40 16 24 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 25 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 26 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 27 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 28 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.41 10.92 7.60 -92.70 -0.70 10.22 16 32 H 0.16 2.51 7.70 -2.91 -0.02 2.49 16 33 H 0.21 0.81 8.06 -2.91 -0.02 0.79 16 34 H 0.11 3.22 6.64 -2.39 -0.02 3.21 16 35 H 0.11 0.84 7.09 -2.39 -0.02 0.82 16 36 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -77.17 324.33 2.37 -74.80 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -0.36 Total: 15.99 kcal Atomic # 6 Polarization: -23.72 SS G_CDS: 4.13 Total: -19.59 kcal Atomic # 7 Polarization: -88.98 SS G_CDS: -3.37 Total: -92.35 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.06 Total: -25.42 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -77.17 2.37 -74.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283941506.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.776 kcal (2) G-P(sol) polarization free energy of solvation -77.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds