Wall clock time and date at job start Mon Mar 30 2020 06:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 120.00174 * 2 1 4 4 N 1.46896 * 109.47250 * 124.99655 * 3 2 1 5 5 C 1.46898 * 111.00060 * 288.69194 * 4 3 2 6 6 C 1.50707 * 109.47165 * 160.25639 * 5 4 3 7 7 H 1.07993 * 119.99900 * 1.77428 * 6 5 4 8 8 C 1.37881 * 119.99966 * 181.76912 * 6 5 4 9 9 N 1.31517 * 119.99885 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99842 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47115 * 89.99995 * 10 8 6 12 12 H 1.48500 * 109.46784 * 210.00277 * 10 8 6 13 13 H 1.48501 * 109.47004 * 329.99664 * 10 8 6 14 14 C 1.46904 * 111.00266 * 164.74380 * 4 3 2 15 15 C 1.50703 * 109.46769 * 293.95339 * 14 4 3 16 16 N 1.30259 * 125.61689 * 89.97219 * 15 14 4 17 17 C 1.34479 * 108.69677 * 180.02562 * 16 15 14 18 18 C 1.34330 * 107.66927 * 0.02562 * 17 16 15 19 19 C 1.50700 * 126.44153 * 180.02562 * 18 17 16 20 20 C 1.53004 * 117.50034 * 188.74701 * 19 18 17 21 21 C 1.52995 * 117.50285 * 120.08609 * 19 18 17 22 22 O 1.33968 * 125.61902 * 270.01768 * 15 14 4 23 23 H 1.08002 * 119.99738 * 179.97438 * 1 2 3 24 24 H 1.07996 * 119.99912 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.00200 * 179.97438 * 2 1 3 26 26 H 1.09004 * 109.46825 * 4.99909 * 3 2 1 27 27 H 1.09003 * 109.47564 * 244.99968 * 3 2 1 28 28 H 1.09002 * 109.47579 * 280.26042 * 5 4 3 29 29 H 1.09007 * 109.47190 * 40.26060 * 5 4 3 30 30 H 0.96998 * 119.99495 * 180.02562 * 9 8 6 31 31 H 1.08990 * 109.47510 * 173.95447 * 14 4 3 32 32 H 1.09000 * 109.47165 * 53.95068 * 14 4 3 33 33 H 1.08000 * 126.16614 * 179.73625 * 17 16 15 34 34 H 1.09002 * 115.55303 * 334.41673 * 19 18 17 35 35 H 1.08998 * 117.49555 * 359.97438 * 20 19 18 36 36 H 1.08999 * 117.49606 * 145.01961 * 20 19 18 37 37 H 1.08993 * 117.50714 * 214.98059 * 21 19 18 38 38 H 1.09009 * 117.49250 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9962 1.3320 1.1345 5 6 2.2745 1.4729 2.4062 6 6 3.1595 1.0204 3.5390 7 1 4.1681 0.6908 3.3377 8 6 2.6816 1.0272 4.8323 9 7 1.4532 1.4281 5.0773 10 14 3.7789 0.4669 6.2364 11 1 4.5304 1.6304 6.7718 12 1 2.9427 -0.1207 7.3138 13 1 4.7356 -0.5544 5.7397 14 6 3.9912 2.4006 0.9729 15 6 4.8733 2.0909 -0.2092 16 7 4.6508 2.4590 -1.4387 17 6 5.6499 2.0005 -2.2134 18 6 6.5051 1.3316 -1.4224 19 6 7.7746 0.6448 -1.8556 20 6 8.4913 -0.2304 -0.8253 21 6 9.0856 1.1217 -1.2274 22 8 6.0149 1.3911 -0.1686 23 1 -0.5400 -0.9353 -0.0004 24 1 -0.5400 0.9353 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3585 2.1316 0.0896 27 1 2.6213 1.4026 -0.9314 28 1 2.0000 2.5173 2.5545 29 1 1.3732 0.8602 2.3823 30 1 1.1172 1.4332 5.9872 31 1 4.6013 2.4683 1.8735 32 1 3.4815 3.3497 0.8071 33 1 5.7449 2.1405 -3.2801 34 1 7.8033 0.3226 -2.8965 35 1 8.0448 -0.3090 0.1659 36 1 8.9918 -1.1280 -1.1886 37 1 9.9768 1.1132 -1.8548 38 1 9.0298 1.9327 -0.5011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292270968.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:52 Heat of formation + Delta-G solvation = 76.871939 kcal Electronic energy + Delta-G solvation = -19397.296120 eV Core-core repulsion = 16436.267477 eV Total energy + Delta-G solvation = -2961.028643 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.06604 -37.48957 -37.01872 -34.40134 -33.20580 -32.47662 -30.23771 -27.45401 -26.75632 -24.05059 -22.90437 -22.56690 -21.93017 -20.78625 -20.15903 -19.14931 -16.91985 -16.61104 -16.30587 -15.81411 -15.17155 -14.73030 -14.40041 -14.34755 -13.92017 -13.33539 -13.14166 -12.75510 -12.33861 -12.11945 -11.74193 -11.52443 -11.42805 -11.19475 -11.07942 -10.98543 -10.80359 -10.70016 -10.63581 -10.47985 -10.16766 -9.98764 -9.30003 -8.80743 -8.44558 -8.33518 -7.43931 -6.03997 -4.05887 1.62471 2.77635 2.85191 2.94433 3.31140 3.37741 3.42407 3.71362 4.27579 4.41942 4.47364 4.63251 4.76224 5.00398 5.14167 5.27874 5.31781 5.43729 5.54003 5.57593 5.70504 5.76521 5.87816 5.94540 5.97780 6.06102 6.14514 6.25979 6.28619 6.43813 6.58277 7.09821 7.15565 7.19075 7.32640 7.77494 7.97803 8.04011 8.09900 8.45429 9.01441 9.58466 11.06367 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.015344 B = 0.005950 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.396148 B = 4704.395739 C = 5989.533923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C 0.071 3.929 4 N -0.528 5.528 5 C 0.194 3.806 6 C -0.510 4.510 7 H 0.064 0.936 8 C 0.057 3.943 9 N -0.897 5.897 10 Si 0.896 3.104 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.150 3.850 15 C 0.225 3.775 16 N -0.492 5.492 17 C -0.037 4.037 18 C -0.031 4.031 19 C -0.076 4.076 20 C -0.169 4.169 21 C -0.167 4.167 22 O -0.188 6.188 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.107 0.893 26 H 0.033 0.967 27 H 0.079 0.921 28 H -0.004 1.004 29 H 0.043 0.957 30 H 0.262 0.738 31 H 0.111 0.889 32 H 0.069 0.931 33 H 0.178 0.822 34 H 0.135 0.865 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.908 -0.609 -13.437 16.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.139 4.139 3 C -0.057 4.057 4 N -0.254 5.254 5 C 0.070 3.930 6 C -0.548 4.548 7 H 0.082 0.918 8 C -0.144 4.144 9 N -0.536 5.536 10 Si 0.724 3.276 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.198 1.198 14 C 0.021 3.979 15 C 0.018 3.982 16 N -0.221 5.221 17 C -0.176 4.176 18 C -0.084 4.084 19 C -0.094 4.094 20 C -0.206 4.206 21 C -0.204 4.204 22 O -0.074 6.074 23 H 0.111 0.889 24 H 0.109 0.891 25 H 0.125 0.875 26 H 0.051 0.949 27 H 0.097 0.903 28 H 0.014 0.986 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.129 0.871 32 H 0.087 0.913 33 H 0.195 0.805 34 H 0.152 0.848 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.518 -0.685 -13.395 16.446 hybrid contribution 0.592 0.002 0.922 1.096 sum 10.109 -0.683 -12.473 16.070 Atomic orbital electron populations 1.23680 0.95904 1.01209 1.03408 1.22803 0.95370 0.98573 0.97201 1.21338 0.94632 0.94402 0.95297 1.62089 1.15676 1.43624 1.04039 1.19825 0.94155 0.95893 0.83141 1.21162 0.99755 1.43297 0.90607 0.91811 1.24969 0.95129 0.95487 0.98842 1.69957 1.15415 1.47681 1.20576 0.86519 0.80394 0.78920 0.81742 1.20709 1.21255 1.19773 1.20456 0.92234 0.94105 0.91062 1.26616 0.84771 0.91326 0.95504 1.70492 1.25961 1.24381 1.01308 1.22884 0.92299 1.01508 1.00914 1.22273 0.98770 1.04978 0.82409 1.20323 0.86581 1.03695 0.98838 1.23066 1.02809 0.94543 1.00143 1.23095 0.95251 0.98628 1.03470 1.84409 1.34403 1.57937 1.30701 0.88910 0.89053 0.87504 0.94890 0.90257 0.98637 0.93916 0.92880 0.87054 0.91277 0.80511 0.84757 0.87773 0.87905 0.87858 0.88413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.42 14.32 29.02 0.42 -3.01 16 2 C -0.12 -2.24 8.72 -36.02 -0.31 -2.55 16 3 C 0.07 1.38 5.28 -4.98 -0.03 1.35 16 4 N -0.53 -11.47 4.37 -238.95 -1.04 -12.51 16 5 C 0.19 4.94 4.59 -4.97 -0.02 4.92 16 6 C -0.51 -14.04 8.58 -34.44 -0.30 -14.34 16 7 H 0.06 1.75 7.74 -52.49 -0.41 1.35 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16 10 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 14 C 0.15 2.93 5.41 -4.97 -0.03 2.90 16 15 C 0.22 4.14 7.02 -12.94 -0.09 4.05 16 16 N -0.49 -8.64 10.17 -11.10 -0.11 -8.75 16 17 C -0.04 -0.55 11.80 -17.77 -0.21 -0.76 16 18 C -0.03 -0.45 6.85 -35.69 -0.24 -0.69 16 19 C -0.08 -0.81 6.25 -91.77 -0.57 -1.38 16 20 C -0.17 -1.72 10.18 -26.69 -0.27 -1.99 16 21 C -0.17 -1.56 10.24 -26.70 -0.27 -1.83 16 22 O -0.19 -3.36 10.55 5.37 0.06 -3.31 16 23 H 0.09 1.38 8.06 -52.49 -0.42 0.96 16 24 H 0.09 1.48 7.84 -52.49 -0.41 1.07 16 25 H 0.11 1.97 8.06 -52.49 -0.42 1.55 16 26 H 0.03 0.64 7.71 -51.93 -0.40 0.24 16 27 H 0.08 1.51 6.08 -51.93 -0.32 1.19 16 28 H 0.00 -0.11 8.00 -51.93 -0.42 -0.53 16 29 H 0.04 1.17 7.09 -51.93 -0.37 0.81 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.11 2.23 7.38 -51.93 -0.38 1.84 16 32 H 0.07 1.28 8.12 -51.93 -0.42 0.86 16 33 H 0.18 1.97 8.06 -52.49 -0.42 1.54 16 34 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.10 1.28 8.00 -51.93 -0.42 0.86 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.10 1.02 8.14 -51.92 -0.42 0.59 16 LS Contribution 326.95 15.07 4.93 4.93 Total: -1.00 -30.55 326.95 -8.12 -38.67 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -5.63 Total: 1.89 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -2.03 Total: -11.81 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.42 Total: -46.80 kcal Atomic # 8 Polarization: -3.36 SS G_CDS: 0.06 Total: -3.31 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.55 -8.12 -38.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292270968.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.541 kcal (2) G-P(sol) polarization free energy of solvation -30.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds